Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.4e-196 688.7 364 100.0
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 2.1e-160 569.3 363 82.9
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 1.2e-150 537.0 364 79.4
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 2.8e-149 532.3 366 79.2
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 1.4e-148 530.0 362 76.8
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 2.8e-144 515.8 362 76.0
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 1.1e-140 503.8 360 75.6
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 6.6e-138 494.6 364 73.9
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 1.1e-137 493.8 375 72.5
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 1.2e-136 490.3 363 73.0
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 4.7e-136 488.4 358 72.1
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 2.9e-133 479.2 358 69.3
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 3.7e-133 478.8 366 72.4
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 7.0e-132 474.6 362 70.2
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 1.7e-130 469.9 359 70.8
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 3.3e-129 465.7 363 68.9
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 4.3e-129 465.3 362 69.1
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 4.7e-128 461.8 359 68.8
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 6.2e-128 461.5 358 69.3
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 6.2e-128 461.5 364 68.7
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 8.1e-128 461.1 358 69.3
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 1.1e-127 460.7 361 68.1
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 4.0e-127 458.8 358 69.0
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 5.2e-127 458.4 363 68.0
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 5.2e-127 458.4 360 66.7
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 8.9e-127 457.6 379 64.6
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.5e-126 456.8 363 67.8
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 3.4e-126 455.7 377 64.5
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 2.2e-125 453.0 378 66.9
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 1.4e-124 450.3 362 66.9
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 1.6e-123 446.8 362 67.4
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.1e-123 446.4 380 64.2
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 6.0e-123 444.9 360 66.4
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.0e-122 444.1 367 67.0
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.3e-122 443.7 367 67.6
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.3e-122 443.7 367 67.6
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 2.3e-122 443.0 362 65.7
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 3.0e-122 442.6 365 65.5
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 1.1e-121 440.7 360 65.0
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.5e-121 440.3 362 66.0
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.5e-121 439.5 380 63.7
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 3.3e-121 439.1 367 66.2
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 3.3e-121 439.1 356 67.4
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 7.3e-121 438.0 359 66.3
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 7.3e-121 438.0 359 67.7
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 1.2e-120 437.2 362 65.7
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 6.2e-120 434.9 363 65.3
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 5.2e-119 431.8 367 65.7
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 5.2e-119 431.8 367 65.1
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 1.5e-118 430.3 358 66.5
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 2.0e-118 429.9 358 66.8
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 2.0e-118 429.9 367 64.6
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 3.4e-118 429.1 362 65.7
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 4.4e-118 428.7 358 64.5
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 5.8e-118 428.3 358 66.8
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 5.8e-118 428.3 362 65.7
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 2.9e-117 426.0 361 66.2
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 4.9e-117 425.2 360 63.9
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.1e-116 424.1 362 65.5
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 1.4e-116 423.7 362 63.8
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 2.4e-116 422.9 363 63.1
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 4.2e-116 422.2 361 65.4
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 9.2e-116 421.0 363 62.5
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 1.6e-115 420.2 362 63.3
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 2.7e-115 419.5 364 63.5
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 2.3e-114 416.4 355 64.5
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 3.0e-114 416.0 361 63.2
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 6.6e-114 414.8 394 59.1
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 8.7e-114 414.5 379 62.0
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 8.7e-114 414.5 423 56.5
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 1.9e-113 413.3 356 63.8
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.9e-113 413.3 379 61.7
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.5e-113 412.9 357 61.6
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.3e-112 410.6 358 62.3
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 6.9e-111 404.8 300 75.7
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 1.5e-110 403.7 359 62.4
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 5.8e-110 401.7 366 62.3
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 9.3e-108 394.4 363 62.0
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 3.5e-107 392.5 340 65.3
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.7e-106 390.2 360 61.4
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 6.6e-106 388.3 364 60.4
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 3.3e-105 386.0 363 58.4
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 3.6e-104 382.5 366 59.0
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.5e-102 377.1 372 58.6
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 5.8e-102 375.2 358 59.2
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 3.8e-101 372.5 381 55.9
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 1.4e-100 370.5 367 57.8
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 5.4e-100 368.6 370 59.7
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 1.3e-98 364.0 362 58.0
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 2.3e-98 363.2 343 60.6
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.1e-97 360.9 374 57.8
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 1.9e-97 360.1 386 56.2
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 2.5e-97 359.8 363 58.7
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 9.6e-97 357.8 340 57.1
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 4.8e-96 355.5 186 100.0
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 2.4e-95 353.2 375 56.8
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 2.4e-95 353.2 371 52.8
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 5.3e-95 352.1 429 50.3
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 4.5e-94 349.0 391 52.4
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 2.9e-93 346.3 380 54.5
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 2.9e-93 346.3 382 54.2
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 8.4e-93 344.7 365 57.3
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.1e-92 344.4 363 57.0
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 1.2e-91 340.9 383 53.5
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 1.2e-91 340.9 383 53.5
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 3.9e-90 335.9 391 53.7
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 2.5e-84 316.6 359 53.5
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 1.6e-83 313.9 382 50.5
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.6e-83 313.9 362 52.8
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 2.7e-83 313.2 382 50.3
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 6.7e-82 308.5 382 50.8
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 1.1e-81 307.8 380 50.0
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 1.1e-81 307.8 380 50.0
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 1.6e-80 303.9 382 50.3
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 8.2e-80 301.6 387 49.6
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 4.6e-75 285.8 343 49.9
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 1.2e-70 271.2 223 68.2
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 5.9e-70 268.9 234 65.0
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 1.0e-69 268.1 388 41.0
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 1.8e-63 247.3 360 45.8
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 2.6e-62 243.4 434 38.5
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 5.2e-58 229.2 335 41.2
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 4.2e-52 209.5 211 55.5
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 8.8e-50 201.8 261 49.0
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 4.1e-47 193.0 361 36.3
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 3.4e-41 173.3 116 75.0
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 1.3e-37 161.4 121 66.1
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.2e-33 148.3 159 57.9
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 1.1e-20 105.1 402 28.9
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 2.5e-20 104.0 417 24.9
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.4e-18 98.2 102 52.9
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 4.4e-17 93.2 117 48.7
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 2.2e-16 90.9 63 66.7
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 1.9e-15 87.8 56 80.4
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 6.6e-13 79.3 56 73.2
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 2.5e-12 77.4 63 66.7
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 2.1e-11 74.3 250 28.8
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 4.7e-11 73.2 62 64.5
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 8.1e-11 72.4 62 64.5
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 1.1e-10 72.0 47 70.2
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 8.9e-10 68.9 62 62.9


User provided reference genes

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