Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 3625.9 1806 100.0
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 3361.6 1806 92.6
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 3354.7 1820 91.7
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 3346.6 1806 92.4
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 3191.7 1804 87.8
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 3149.4 1814 86.3
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 3126.7 1806 86.0
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 3122.0 1803 85.7
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 3103.2 1807 85.2
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 3078.9 1805 84.4
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 3056.5 1844 82.6
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 3006.9 1807 83.1
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 2693.3 1935 70.4
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 2667.9 1844 72.6
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 2636.7 1926 69.6
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 2632.4 1827 72.0
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 2629.0 1823 71.9
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 2625.5 1823 71.6
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 2619.0 1822 71.0
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 2618.6 1834 70.8
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 2617.8 1823 71.3
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2606.2 1823 70.4
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 2605.9 1823 70.5
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 2595.5 1792 71.9
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2589.3 1827 70.2
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 2588.1 1832 70.4
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 2587.8 1823 70.3
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 2578.5 1830 69.7
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2563.5 1836 69.3
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2544.2 1848 68.7
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 2536.9 1821 69.1
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2535.4 1883 67.4
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 2533.1 1965 66.3
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 2521.9 1824 68.4
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 2509.6 1824 68.5
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 2507.6 1892 67.6
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 2499.5 1825 68.2
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 2492.6 1824 68.0
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 2476.4 1699 71.8
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 2462.2 1942 64.9
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 2434.1 1939 64.3
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 2425.2 1823 67.9
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2385.1 1818 65.5
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2382.1 1818 65.7
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 2381.3 1826 65.2
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 2379.7 1832 65.3
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 2372.0 1818 66.2
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 2353.6 1823 65.2
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2346.2 1819 63.7
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2333.9 1590 71.8
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 2331.6 1826 64.3
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 2330.4 1726 66.6
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2320.8 1813 63.9
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 2316.2 1820 63.7
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 2311.2 1821 64.0
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 2285.4 1824 63.8
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 2277.7 1824 63.3
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 2274.6 1819 63.0
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 2269.2 1828 63.0
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2267.7 1940 60.0
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2266.9 1822 62.8
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 2263.8 1822 62.9
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2263.4 1818 63.1
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2259.2 1821 62.9
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 2258.8 1698 67.8
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 2245.3 1825 61.8
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2236.5 1848 62.2
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2227.2 1827 62.1
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 2223.4 1722 66.1
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 2203.3 1824 61.8
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2202.2 1838 61.3
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2200.6 1827 61.5
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2198.7 1843 61.7
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2197.2 1820 61.9
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 2181.8 1825 61.2
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2166.0 1852 60.7
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 2154.4 1860 59.9
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 2147.1 1452 73.6
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 2135.5 1825 60.1
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 2109.7 1835 58.3
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 2108.2 1844 60.4
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 2067.0 1839 59.4
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 2058.1 1774 62.1
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1989.2 1467 68.5
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1836.6 1521 62.1
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1753.8 1206 72.0
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1723.8 1217 69.2
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1662.1 1329 64.3
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1643.6 1743 51.3
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1573.1 1404 58.7
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1559.3 966 80.0
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1434.5 1948 43.1
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1431.4 1782 45.0
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1394.4 1929 42.4
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1367.8 1050 65.2
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1341.3 1348 55.3
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1227.6 933 64.8
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 0.0e+00 1171.4 1212 52.6
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 0.0e+00 1170.2 1835 39.7
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 0.0e+00 1169.5 899 63.6
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 0.0e+00 1167.1 1151 54.9
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 0.0e+00 1160.2 785 73.6
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 0.0e+00 1075.5 918 63.4
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 2.5e-286 989.9 909 58.0
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 6.1e-277 958.7 1649 38.8
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 2.9e-258 896.7 815 57.5
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 2.6e-235 820.5 635 65.0
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.3e-231 807.4 724 57.6
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.4e-220 771.5 516 72.1
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 3.1e-220 770.4 861 48.5
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 6.9e-212 742.7 516 71.7
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 7.9e-208 729.2 625 59.8
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 2.1e-205 721.1 510 68.8
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.2e-186 657.9 1067 39.3
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.1e-185 655.6 880 47.6
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.1e-182 645.6 522 60.3
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.2e-178 631.3 566 61.8
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 4.5e-171 607.1 892 40.2
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 4.2e-169 600.5 295 100.0
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 2.7e-155 554.7 729 44.3
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 3.6e-152 544.3 395 67.3
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 1.5e-150 538.9 434 63.8
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 1.9e-137 495.4 327 73.7
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.1e-135 489.6 421 63.2
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 2.3e-135 488.4 439 58.3
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 6.0e-123 447.2 312 71.2
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 5.1e-122 444.1 370 59.5
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 2.5e-121 441.8 532 45.5
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 8.1e-120 436.8 357 65.8
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.6e-115 422.5 511 45.6
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 6.4e-109 400.6 839 34.4
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 2.1e-104 385.6 408 56.1
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 2.1e-104 385.6 393 54.7
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 1.4e-103 382.9 311 61.1
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 9.0e-103 380.2 255 74.9
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 8.4e-101 373.6 392 51.8
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 1.9e-100 372.5 339 57.5
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 5.8e-86 324.3 809 29.9
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 5.5e-84 317.8 186 83.3
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 1.0e-61 243.8 183 71.0
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 2.9e-61 242.3 142 84.5
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 5.5e-60 238.0 164 68.9
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 2.7e-51 209.1 122 82.0
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 6.5e-45 188.0 230 43.5
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 8.0e-43 181.0 230 43.5
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 6.8e-42 177.9 126 66.7
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 7.7e-38 164.5 144 59.7
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 1.6e-35 156.8 169 47.9
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 2.1e-35 156.4 102 78.4
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 4.0e-34 152.1 109 72.5
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 8.9e-34 151.0 101 73.3
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 9.8e-33 147.5 86 80.2
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 2.8e-32 146.0 450 25.6
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 6.3e-32 144.8 154 50.0
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 2.4e-31 142.9 108 65.7
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 7.8e-30 137.9 163 45.4
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 1.0e-29 137.5 221 36.2
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 1.9e-28 133.3 300 32.3
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 1.9e-28 133.3 109 67.0
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 5.6e-28 131.7 158 41.8
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 5.6e-28 131.7 124 53.2
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.6e-27 130.2 206 38.3
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 1.5e-25 123.6 176 40.9
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 4.4e-25 122.1 103 63.1
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 2.9e-24 119.4 107 57.0
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 8.6e-21 107.8 54 83.3
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 1.9e-20 106.7 143 50.3
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 3.3e-20 105.9 124 41.1
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 1.6e-19 103.6 76 64.5
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 3.6e-19 102.4 122 50.0
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 4.7e-19 102.1 124 43.5
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 1.8e-18 100.1 86 53.5
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 2.3e-18 99.8 74 63.5
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 7.5e-17 94.7 71 70.4
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 6.4e-16 91.7 87 51.7
Potri.010G187201 Populus trichocarpa HOM05D003492 ORTHO05D019467 2.1e-14 86.7 77 54.5
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 1.7e-13 83.6 58 74.1
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.4e-10 73.9 101 42.6
SHI03338 Sapria himalayana HOM05D003492 ORTHO05D005115 3.1e-10 72.8 75 45.3
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 4.1e-07 62.4 60 60.0
HanXRQChr15g0464841 Helianthus annuus HOM05D003492 ORTHO05D005115 9.2e-07 61.2 70 50.0
Sabra10G0144400 Salix brachista HOM05D003492 ORTHO05D019467 2.7e-06 59.7 125 32.8


User provided reference genes

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