Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 5.7e-175 617.5 309 100.0
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 8.8e-168 593.6 309 95.5
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 1.3e-166 589.7 309 94.8
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 2.4e-165 585.5 309 94.2
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 1.8e-160 569.3 309 90.3
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 2.8e-158 562.0 309 89.0
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 1.2e-153 546.6 309 86.1
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 1.0e-152 543.5 309 86.4
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 1.0e-152 543.5 309 86.4
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 1.8e-152 542.7 309 85.4
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 1.8e-152 542.7 309 85.8
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 2.3e-152 542.3 309 86.1
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 2.6e-151 538.9 309 85.4
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 2.6e-151 538.9 309 84.8
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 5.8e-151 537.7 308 85.4
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 9.8e-151 537.0 309 84.8
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 1.3e-150 536.6 309 84.8
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 2.2e-150 535.8 307 85.0
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 2.4e-149 532.3 307 84.7
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 3.2e-149 531.9 309 83.5
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 3.2e-149 531.9 309 83.8
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 9.2e-149 530.4 309 84.1
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 1.6e-148 529.6 307 83.7
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 1.6e-148 529.6 304 84.9
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 2.0e-148 529.3 307 84.4
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 7.8e-148 527.3 309 82.5
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 1.0e-147 526.9 309 83.8
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 1.3e-147 526.6 314 82.5
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 2.3e-147 525.8 307 83.4
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 2.3e-147 525.8 307 83.4
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 2.3e-147 525.8 319 80.9
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 3.0e-147 525.4 308 82.8
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 5.0e-147 524.6 307 83.4
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 6.6e-147 524.2 307 83.1
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 6.6e-147 524.2 309 81.6
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 8.6e-147 523.9 308 83.1
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 1.9e-146 522.7 307 82.7
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 1.9e-146 522.7 314 82.5
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 1.9e-146 522.7 308 83.4
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 1.9e-146 522.7 308 83.4
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 3.3e-146 521.9 309 84.5
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 4.3e-146 521.5 308 81.5
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 5.6e-146 521.2 308 83.1
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 5.6e-146 521.2 307 82.4
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 1.2e-145 520.0 309 84.1
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 1.6e-145 519.6 308 82.8
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 2.1e-145 519.2 319 79.6
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 2.8e-145 518.8 307 82.4
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 2.8e-145 518.8 307 82.4
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 4.7e-145 518.1 307 82.4
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 4.7e-145 518.1 308 83.1
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 6.2e-145 517.7 307 81.8
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 8.0e-145 517.3 307 82.4
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 1.8e-144 516.2 307 82.1
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 4.0e-144 515.0 299 84.6
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 4.0e-144 515.0 307 81.8
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 8.9e-144 513.8 330 77.3
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 1.2e-143 513.5 307 81.4
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 2.0e-143 512.7 309 81.6
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 2.2e-142 509.2 307 80.8
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 2.1e-140 502.7 307 79.2
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 6.0e-140 501.1 366 71.0
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 1.0e-139 500.4 340 76.8
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 8.6e-139 497.3 299 83.3
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 8.6e-139 497.3 309 79.9
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 3.3e-138 495.4 310 78.4
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 2.8e-137 492.3 305 78.7
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 4.7e-137 491.5 307 77.9
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 8.1e-137 490.7 297 81.1
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 2.9e-134 482.3 331 75.8
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 8.3e-134 480.7 307 77.9
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 1.7e-131 473.0 306 76.8
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 8.6e-131 470.7 324 74.4
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 3.6e-129 465.3 307 75.9
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 6.2e-129 464.5 344 70.3
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 1.5e-127 459.9 299 74.9
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 4.4e-127 458.4 321 73.5
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.3e-126 456.8 316 74.7
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 3.8e-126 455.3 499 52.9
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 1.1e-125 453.8 265 83.4
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 1.4e-125 453.4 289 78.5
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 4.2e-125 451.8 349 65.3
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 1.7e-123 446.4 311 74.0
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 2.3e-123 446.0 309 72.5
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 6.9e-120 434.5 259 81.1
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 3.4e-119 432.2 419 56.6
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 7.6e-119 431.0 309 73.1
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 1.7e-118 429.9 308 69.2
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 4.9e-118 428.3 252 82.9
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 9.3e-117 424.1 306 69.3
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 4.6e-116 421.8 306 66.7
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 4.3e-114 415.2 262 80.2
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 4.8e-113 411.8 306 65.7
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 2.4e-112 409.5 307 69.7
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 7.6e-111 404.4 229 84.3
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 9.9e-111 404.1 260 76.9
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 8.4e-110 401.0 240 81.7
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 4.2e-109 398.7 299 69.9
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 3.5e-108 395.6 300 64.7
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 8.1e-105 384.4 255 75.7
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 4.2e-101 372.1 263 69.6
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 1.2e-95 354.0 219 78.5
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 2.0e-95 353.2 244 72.1
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 3.0e-91 339.3 309 58.6
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 6.7e-91 338.2 228 71.1
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 8.2e-89 331.3 307 59.0
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 1.8e-88 330.1 207 76.3
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 9.0e-88 327.8 299 56.9
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 1.2e-76 290.8 184 77.2
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 2.7e-76 289.7 302 52.0
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 3.9e-75 285.8 177 78.0
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 2.2e-70 270.0 158 84.2
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 1.8e-67 260.4 195 69.7
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.8e-64 250.4 488 36.5
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 4.1e-64 249.2 157 80.3
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 7.0e-64 248.4 151 77.5
Cpa.g.sc116.24 Carica papaya HOM05D005540 ORTHO05D006932 1.2e-58 231.1 142 80.3
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 7.5e-58 228.4 120 88.3
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 4.8e-57 225.7 120 90.8
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 6.3e-49 198.7 228 51.3
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 1.0e-46 191.4 113 79.6
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 4.4e-42 176.0 267 34.8
Nn3g18202 Nelumbo nucifera HOM05D005540 ORTHO05D006932 5.6e-37 159.1 99 75.8
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 1.0e-35 154.8 288 33.7
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 1.2e-28 131.3 66 90.9
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 5.2e-27 125.9 325 27.4
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.9e-24 117.5 58 96.6
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 1.2e-23 114.8 56 96.4
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 1.6e-23 114.4 63 84.1
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 4.6e-23 112.8 56 94.6
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.3e-22 110.5 57 93.0
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 5.1e-22 109.4 70 71.4
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 1.2e-18 98.2 62 79.0
SEGI_04261 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 7.3e-13 79.0 65 60.0
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 1.1e-11 75.1 39 84.6
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.6e-10 70.5 33 90.9
SHI09501 Sapria himalayana HOM05D005540 ORTHO05D006932 7.1e-08 62.4 55 58.2
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 5.1e-06 56.2 102 33.3
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 5.1e-06 56.2 110 31.8


User provided reference genes

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