Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05681_v3 Cicer arietinum L. HOM05D000782 ORTHO05D000571 1.9e-89 332.4 164 100.0
TPR.G25342 Trifolium pratense HOM05D000782 ORTHO05D000571 3.7e-56 221.9 162 71.0
Medtr5g074550 Medicago truncatula HOM05D000782 ORTHO05D000571 1.2e-54 216.9 157 70.1
Psat0s2794g0120 Pisum sativum HOM05D000782 ORTHO05D000571 3.8e-53 211.8 165 66.1
Glyma.14G200600 Glycine max HOM05D000782 ORTHO05D000571 9.8e-49 197.2 157 65.6
Glyma.02G233000 Glycine max HOM05D000782 ORTHO05D000571 2.8e-48 195.7 162 64.2
Phvul.008G250800 Phaseolus vulgaris HOM05D000782 ORTHO05D000571 4.9e-48 194.9 157 65.0
VMungo0647G1733 Vigna mungo HOM05D000782 ORTHO05D000571 1.2e-46 190.3 157 62.4
Medtr5g074560 Medicago truncatula HOM05D000782 ORTHO05D000571 4.3e-44 181.8 162 58.6
Lalb_Chr10g0103661 Lupinus albus HOM05D000782 ORTHO05D000571 5.4e-39 164.9 160 57.5
LjContig00141g0026997 Lotus japonicus HOM05D000782 ORTHO05D000571 3.9e-37 158.7 162 54.9
GSVIVG01024611001 Vitis vinifera HOM05D000001 ORTHO05D012572 4.7e-27 125.2 160 42.5
Cpa.g.sc2.336 Carica papaya HOM05D000782 ORTHO05D000571 1.1e-26 124.0 144 44.4
QL01p025713 Quercus lobata HOM05D000782 ORTHO05D000571 1.1e-26 124.0 143 44.8
Duzib168G2101 Durio zibethinus HOM05D000782 ORTHO05D000571 2.3e-26 122.9 146 45.9
Prupe.6G045600 Prunus persica HOM05D000782 ORTHO05D000571 2.3e-26 122.9 144 47.2
MD11G1060400 Malus domestica HOM05D000782 ORTHO05D000571 3.1e-26 122.5 144 46.5
Gohir.A03G024700 Gossypium hirsutum HOM05D000782 ORTHO05D000571 5.2e-26 121.7 159 45.9
Gohir.D03G143800 Gossypium hirsutum HOM05D000782 ORTHO05D000571 6.8e-26 121.3 159 45.3
Gorai.003G151100 Gossypium raimondii HOM05D000782 ORTHO05D000571 1.2e-25 120.6 159 45.3
arahy.Tifrunner.gnm1.ann1.NRMQ9K Arachis hypogaea HOM05D000782 ORTHO05D000571 4.4e-25 118.6 162 41.4
RcHm_v2.0_Chr5g0071971 Rosa chinensis HOM05D000782 ORTHO05D000571 4.4e-25 118.6 144 45.8
FAN25G1963 Fragaria x ananassa HOM05D000001 ORTHO05D012572 5.8e-25 118.2 144 45.1
FvH4_3g39960 Fragaria vesca HOM05D000782 ORTHO05D000571 7.5e-25 117.9 144 45.1
FAN16G3647 Fragaria x ananassa HOM05D000001 ORTHO05D012572 7.5e-25 117.9 144 45.1
Thecc.09G359700 Theobroma cacao HOM05D000782 ORTHO05D000571 9.9e-25 117.5 143 47.6
QL04p095962 Quercus lobata HOM05D000782 ORTHO05D000571 1.3e-24 117.1 143 42.7
Haze_24431 Corylus avellana HOM05D000782 ORTHO05D000571 2.2e-24 116.3 155 44.5
arahy.Tifrunner.gnm1.ann1.89W0PE Arachis hypogaea HOM05D000782 ORTHO05D000571 2.9e-24 115.9 162 40.7
Atru.chr1.2094 Acer truncatum HOM05D000782 ORTHO05D000571 3.7e-24 115.5 162 40.1
COL.COLO4_11173 Corchorus olitorius HOM05D000782 ORTHO05D000571 3.7e-24 115.5 147 44.9
MD03G1058200 Malus domestica HOM05D000782 ORTHO05D000571 3.7e-24 115.5 144 44.4
QL04p095983 Quercus lobata HOM05D000782 ORTHO05D000571 4.9e-24 115.2 143 42.7
Actinidia32599 Actinidia chinensis HOM05D000782 ORTHO05D000571 8.3e-24 114.4 147 43.5
FAN21G0593 Fragaria x ananassa HOM05D000782 ORTHO05D000571 8.3e-24 114.4 144 43.8
MD17G1185800 Malus domestica HOM05D000782 ORTHO05D000571 1.1e-23 114.0 144 45.1
Eucgr.K01367 Eucalyptus grandis HOM05D000782 ORTHO05D000571 2.4e-23 112.8 146 45.2
Ciclev10002580m.g Citrus clementina HOM05D000782 ORTHO05D000571 4.1e-23 112.1 144 40.3
Gohir.A08G203700 Gossypium hirsutum HOM05D000782 ORTHO05D000571 4.1e-23 112.1 144 44.4
TWI79G1409 Tripterygium wilfordii HOM05D000782 ORTHO05D000571 4.1e-23 112.1 142 48.6
TAR369G0987 Trochodendron aralioides HOM05D000782 ORTHO05D000571 1.6e-22 110.2 146 43.2
TAR623G1242 Trochodendron aralioides HOM05D000782 ORTHO05D000571 2.7e-22 109.4 146 41.8
Gohir.D08G221000 Gossypium hirsutum HOM05D000782 ORTHO05D000571 3.5e-22 109.0 143 43.4
Gorai.004G234700 Gossypium raimondii HOM05D000782 ORTHO05D000571 3.5e-22 109.0 143 43.4
Oeu050028.1 Olea europaea HOM05D000782 ORTHO05D000571 6.0e-22 108.2 148 41.2
Dinv12248 Davidia involucrata HOM05D000782 ORTHO05D000571 1.0e-21 107.5 149 40.3
TAR623G0287 Trochodendron aralioides HOM05D000782 ORTHO05D000571 6.6e-21 104.8 144 41.0
Sabra19G0130500 Salix brachista HOM05D000782 ORTHO05D000571 1.1e-20 104.0 153 40.5
CiPaw.14G053200 Carya illinoinensis HOM05D000782 ORTHO05D000571 1.5e-20 103.6 142 45.1
Hma1.2p1_1421F.1_g282460 Hydrangea macrophylla HOM05D000782 ORTHO05D000571 1.9e-20 103.2 146 41.1
CANSAT54G1735 Cannabis sativa HOM05D000782 ORTHO05D000571 4.3e-20 102.1 144 46.5
vmacro02905 Vaccinium macrocarpon HOM05D000782 ORTHO05D000571 1.2e-19 100.5 150 40.7
CARHR123590 Cardamine hirsuta HOM05D000782 ORTHO05D000571 2.8e-19 99.4 144 43.8
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 4.7e-19 98.6 147 40.8
Aa31LG5G6450 Aethionema arabicum HOM05D002411 ORTHO05D002564 6.2e-19 98.2 144 42.4
Rhsim13G0062600 Rhododendron simsii HOM05D000782 ORTHO05D000571 6.2e-19 98.2 144 43.1
CiPaw.13G067500 Carya illinoinensis HOM05D000782 ORTHO05D000571 8.1e-19 97.8 154 40.3
Thhalv10017277m.g Eutrema salsugineum HOM05D000782 ORTHO05D000571 8.1e-19 97.8 144 41.0
Actinidia23186 Actinidia chinensis HOM05D006271 ORTHO05D008237 2.4e-18 96.3 147 38.1
BraA03t10980Z Brassica rapa HOM05D000782 ORTHO05D000571 2.4e-18 96.3 146 39.7
AT2G30270 Arabidopsis thaliana HOM05D000782 ORTHO05D000571 4.0e-18 95.5 144 41.7
A03p16910 Brassica napus HOM05D000782 ORTHO05D000571 4.0e-18 95.5 146 39.7
Manes.18G126600 Manihot esculenta HOM05D000782 ORTHO05D000571 4.0e-18 95.5 146 40.4
Sp4g12850 Schrenkiella parvula HOM05D000782 ORTHO05D000571 4.0e-18 95.5 144 41.0
AL4G25120 Arabidopsis lyrata HOM05D000782 ORTHO05D000571 6.8e-18 94.7 144 40.3
Lj2A1095G46 Lonicera japonica HOM05D000782 ORTHO05D000571 6.8e-18 94.7 147 39.5
Cc01_g15010 Coffea canephora HOM05D000782 ORTHO05D000571 1.2e-17 94.0 157 37.6
SalBow2G3499 Salvia bowleyana HOM05D000782 ORTHO05D000571 1.5e-17 93.6 153 40.5
Migut.N00751 Erythranthe guttata HOM05D000782 ORTHO05D000571 2.6e-17 92.8 144 36.8
Sabra19G0124100 Salix brachista HOM05D000782 ORTHO05D000571 4.4e-17 92.0 178 36.0
SGA_v2.0_scaffold120G32965 Striga asiatica HOM05D000782 ORTHO05D000571 4.4e-17 92.0 196 32.7
BcaC01g06019 Brassica carinata HOM05D000782 ORTHO05D000571 7.6e-17 91.3 144 38.9
THA.LOC104800764 Tarenaya hassleriana HOM05D000782 ORTHO05D000571 7.6e-17 91.3 143 39.2
C03p19910 Brassica napus HOM05D000782 ORTHO05D000571 1.3e-16 90.5 144 38.9
BolC3t14370H Brassica oleracea HOM05D000782 ORTHO05D000571 1.3e-16 90.5 144 38.9
Carub.0004s1143 Capsella rubella HOM05D000782 ORTHO05D000571 3.8e-16 89.0 144 40.3
Sc21g0004900 Simmondsia chinensis HOM05D000782 ORTHO05D000571 4.9e-16 88.6 148 33.8
Potri.019G126300 Populus trichocarpa HOM05D000782 ORTHO05D000571 1.1e-15 87.4 130 41.5
PGSC0003DMG400030460 Solanum tuberosum HOM05D000782 ORTHO05D000571 1.4e-15 87.0 150 37.3
Solyc06g082380.3 Solanum lycopersicum HOM05D000782 ORTHO05D000571 1.9e-15 86.7 148 35.1
Sopen06g033770 Solanum pennellii HOM05D000782 ORTHO05D000571 2.4e-15 86.3 148 35.1
CAN.G1095.28 Capsicum annuum HOM05D000782 ORTHO05D000571 5.4e-15 85.1 144 36.1
Aqoxy4G02166 Aquilegia oxysepala HOM05D000782 ORTHO05D000571 2.1e-14 83.2 156 36.5
AUR62036230 Chenopodium quinoa HOM05D006271 ORTHO05D008237 6.0e-14 81.6 142 38.0
MBI15_g20019_MAGBIO Magnolia biondii HOM05D000782 ORTHO05D000571 6.0e-14 81.6 145 35.2
Lsat_1_v5_gn_8_108720 Lactuca sativa HOM05D000782 ORTHO05D000571 7.8e-14 81.3 152 36.8
HanXRQChr11g0339921 Helianthus annuus HOM05D000782 ORTHO05D000571 1.7e-13 80.1 150 37.3
DCAR_023953 Daucus carota HOM05D000782 ORTHO05D000571 2.3e-13 79.7 153 35.9
PSO170G6702 Papaver somniferum HOM05D000782 ORTHO05D000571 5.1e-13 78.6 147 34.7
Sed0021709 Sechium edule HOM05D000782 ORTHO05D000571 5.1e-13 78.6 150 38.0
ClCG08G003160 Citrullus lanatus HOM05D000782 ORTHO05D000571 6.6e-13 78.2 151 37.7
AUR62009715 Chenopodium quinoa HOM05D000782 ORTHO05D000571 8.7e-13 77.8 147 37.4
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 8.7e-13 77.8 144 34.0
Ah.08g215420 Amaranthus hybridus HOM05D000782 ORTHO05D000571 4.3e-12 75.5 142 33.8
MSTRG.12694 Avicennia marina HOM05D000782 ORTHO05D000571 4.3e-12 75.5 147 32.0
CsaV3_7G022830 Cucumis sativus L. HOM05D000782 ORTHO05D000571 7.3e-12 74.7 147 36.1
ECA236G0449 Erigeron canadensis HOM05D000782 ORTHO05D000571 1.2e-11 73.9 123 35.8
EL10Ac7g15871 Beta vulgaris HOM05D000782 ORTHO05D000571 4.7e-11 72.0 142 33.1
MELO3C024977.2 Cucumis melo HOM05D000782 ORTHO05D000571 4.7e-11 72.0 147 34.7
Nn2g11061 Nelumbo nucifera HOM05D000782 ORTHO05D000571 8.1e-11 71.2 145 34.5
MBI15_g13922_MAGBIO Magnolia biondii HOM05D000782 ORTHO05D000571 1.2e-09 67.4 149 34.2
MBI15_g43140_MAGBIO Magnolia biondii HOM05D000782 ORTHO05D000571 1.2e-09 67.4 149 34.2
Medtr7g072170 Medicago truncatula HOM05D000782 ORTHO05D000571 1.2e-09 67.4 149 30.9
CANSAT35G0618 Cannabis sativa HOM05D000782 ORTHO05D000571 2.0e-09 66.6 149 32.2
ATR0681G158 Amborella trichopoda HOM05D000782 ORTHO05D000571 4.4e-09 65.5 163 28.8
DCAR_028901 Daucus carota HOM05D000782 ORTHO05D000571 7.6e-09 64.7 152 31.6
PSO017G2627 Papaver somniferum HOM05D000782 ORTHO05D000571 7.6e-09 64.7 149 31.5
PSO170G5746 Papaver somniferum HOM05D000782 ORTHO05D000571 7.6e-09 64.7 149 31.5
HPP92_001136 Vanilla planifolia HOM05D000782 ORTHO05D000571 7.6e-09 64.7 144 28.5
Cc06_g00620 Coffea canephora HOM05D000782 ORTHO05D000571 1.3e-08 63.9 149 31.5
DCAR_028900 Daucus carota HOM05D000782 ORTHO05D000571 1.3e-08 63.9 149 30.9
Lj1g0027513 Lotus japonicus HOM05D000782 ORTHO05D000571 1.7e-08 63.5 151 31.1
ClCG03G000180 Citrullus lanatus HOM05D000782 ORTHO05D000571 2.2e-08 63.2 179 29.6
DCAR_028905 Daucus carota HOM05D000782 ORTHO05D000571 2.2e-08 63.2 153 30.7
Duzib268G0853 Durio zibethinus HOM05D000782 ORTHO05D000571 2.2e-08 63.2 149 30.9
Nitab4.5_0003270g0030 Nicotiana tabacum HOM05D000782 ORTHO05D000571 2.2e-08 63.2 130 34.6
VMungo0925G0001 Vigna mungo HOM05D000782 ORTHO05D000571 2.2e-08 63.2 151 29.8
Aqoxy4G02163 Aquilegia oxysepala HOM05D000782 ORTHO05D000571 2.9e-08 62.8 148 33.1
PSO017G2384 Papaver somniferum HOM05D000782 ORTHO05D000571 3.8e-08 62.4 147 31.3
Lalb_Chr03g0043661 Lupinus albus HOM05D000782 ORTHO05D000571 4.9e-08 62.0 151 29.8
Sed0004158 Sechium edule HOM05D000782 ORTHO05D000571 4.9e-08 62.0 149 29.5
CAN.G738.2 Capsicum annuum HOM05D000782 ORTHO05D000571 6.4e-08 61.6 153 32.7
CAN.G738.4 Capsicum annuum HOM05D000782 ORTHO05D000571 6.4e-08 61.6 153 32.0
Ca_07723_v3 Cicer arietinum L. HOM05D000782 ORTHO05D000571 6.4e-08 61.6 151 31.1
Ca_07729_v3 Cicer arietinum L. HOM05D000782 ORTHO05D000571 6.4e-08 61.6 151 31.1
Eucgr.K01266 Eucalyptus grandis HOM05D000782 ORTHO05D000571 8.4e-08 61.2 147 27.2
MSTRG.5527 Avicennia marina HOM05D000782 ORTHO05D000571 1.9e-07 60.1 141 31.2
TPR.G35292 Trifolium pratense HOM05D000782 ORTHO05D000571 1.9e-07 60.1 148 30.4
Peaxi162Scf00390g00530 Petunia axillaris HOM05D000782 ORTHO05D000571 2.4e-07 59.7 121 35.5
HanXRQChr15g0463441 Helianthus annuus HOM05D000002 ORTHO05D000571 3.2e-07 59.3 149 31.5
Medtr7g072140 Medicago truncatula HOM05D000782 ORTHO05D000571 3.2e-07 59.3 151 30.5
Sed0019692 Sechium edule HOM05D000782 ORTHO05D000571 4.2e-07 58.9 152 30.3
Lsat_1_v5_gn_9_38141 Lactuca sativa HOM05D000782 ORTHO05D000571 5.4e-07 58.5 166 28.9
CDE06G2424 Ceratophyllum demersum HOM05D000782 ORTHO05D000571 9.3e-07 57.8 158 27.2
ClCG10G022570 Citrullus lanatus HOM05D000782 ORTHO05D000571 9.3e-07 57.8 141 32.6
Migut.J00076 Erythranthe guttata HOM05D000782 ORTHO05D000571 9.3e-07 57.8 153 28.1
QL07p033337 Quercus lobata HOM05D000782 ORTHO05D000571 9.3e-07 57.8 149 28.9
MD12G1183400 Malus domestica HOM05D000782 ORTHO05D000571 1.6e-06 57.0 149 28.2
Nitab4.5_0004057g0010 Nicotiana tabacum HOM05D000782 ORTHO05D000571 2.1e-06 56.6 138 31.2
Prupe.6G287800 Prunus persica HOM05D000782 ORTHO05D000571 2.1e-06 56.6 152 27.6
SEGI_32147 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 2.1e-06 56.6 147 27.9
Lj3A943G21 Lonicera japonica HOM05D000782 ORTHO05D000571 2.7e-06 56.2 168 27.4
Nitab4.5_0000381g0020 Nicotiana tabacum HOM05D000782 ORTHO05D000571 3.5e-06 55.8 135 28.9
Peaxi162Scf00009g00812 Petunia axillaris HOM05D000782 ORTHO05D000571 3.5e-06 55.8 149 29.5
Oeu064891.1 Olea europaea HOM05D000782 ORTHO05D000571 4.6e-06 55.5 153 30.1
SGA_v2.0_scaffold373G50167 Striga asiatica HOM05D000782 ORTHO05D000571 6.0e-06 55.1 153 29.4
Nn2g11064 Nelumbo nucifera HOM05D000782 ORTHO05D000571 7.8e-06 54.7 137 29.9


User provided reference genes

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