Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 2.3e-179 632.1 323 100.0
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 4.6e-119 431.8 306 76.1
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 1.7e-113 413.3 306 73.9
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 4.2e-112 408.7 311 70.4
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 1.4e-110 403.7 313 69.3
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 6.7e-110 401.4 313 69.0
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 2.6e-106 389.4 312 68.9
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 5.9e-106 388.3 313 68.1
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 3.7e-100 369.0 312 65.7
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 7.0e-99 364.8 315 66.3
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 1.2e-95 354.0 309 64.4
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 1.8e-83 313.5 317 58.4
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 1.7e-81 307.0 316 56.3
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 1.1e-80 304.3 317 56.8
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 2.5e-80 303.1 317 54.6
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 1.6e-79 300.4 325 56.3
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 8.0e-79 298.1 316 56.6
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 1.0e-78 297.7 320 55.3
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 8.9e-78 294.7 317 56.2
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 6.4e-76 288.5 318 54.4
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 1.1e-75 287.7 317 54.6
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 1.4e-75 287.3 319 52.0
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 2.4e-75 286.6 319 55.5
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 7.0e-75 285.0 316 53.2
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 7.0e-75 285.0 318 55.0
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 2.0e-74 283.5 317 54.9
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 1.0e-73 281.2 317 53.9
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 3.0e-73 279.6 317 53.6
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 3.9e-73 279.3 332 51.2
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 5.0e-73 278.9 317 52.1
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 8.6e-73 278.1 317 52.4
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 1.1e-72 277.7 316 50.0
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 1.5e-72 277.3 319 53.6
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 4.3e-72 275.8 319 53.3
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 5.6e-72 275.4 319 53.0
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 7.3e-72 275.0 317 52.4
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 9.5e-72 274.6 314 52.5
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 9.5e-72 274.6 317 51.4
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 1.2e-71 274.2 317 51.1
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 2.1e-71 273.5 318 52.5
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 3.6e-71 272.7 317 51.4
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 1.1e-70 271.2 317 51.7
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 1.4e-70 270.8 317 51.1
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 4.0e-70 269.2 317 51.4
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 8.9e-70 268.1 330 51.2
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 1.5e-69 267.3 306 50.7
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 2.0e-69 266.9 317 51.1
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 4.4e-69 265.8 316 50.9
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 1.3e-68 264.2 317 51.1
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 3.7e-68 262.7 315 49.8
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 4.9e-68 262.3 319 51.7
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 4.9e-68 262.3 298 54.0
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 4.9e-68 262.3 319 51.4
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 1.1e-67 261.2 322 50.0
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 1.9e-67 260.4 310 49.7
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 2.0e-66 256.9 322 50.9
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 2.0e-66 256.9 317 50.8
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 2.3e-65 253.4 310 50.3
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 2.3e-65 253.4 315 50.2
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 1.1e-64 251.1 318 49.4
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 1.9e-64 250.4 330 50.6
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 2.8e-63 246.5 318 48.7
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 4.0e-62 242.7 158 78.5
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 4.9e-60 235.7 329 46.2
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 1.4e-59 234.2 323 45.2
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 4.1e-59 232.6 320 46.6
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 5.4e-59 232.3 307 49.8
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 1.2e-58 231.1 325 45.8
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 2.1e-58 230.3 260 56.2
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 2.1e-58 230.3 319 47.6
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 2.1e-58 230.3 319 45.8
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 2.7e-58 229.9 326 45.4
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 3.5e-58 229.6 310 46.5
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 1.3e-57 227.6 330 45.8
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 5.1e-57 225.7 273 49.5
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 1.5e-56 224.2 321 44.9
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 3.3e-56 223.0 322 45.3
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 4.3e-56 222.6 321 45.8
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 5.6e-56 222.2 320 45.3
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 2.8e-55 219.9 310 44.8
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 2.8e-55 219.9 322 45.3
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 4.7e-55 219.2 321 43.3
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 4.7e-55 219.2 321 43.3
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 1.1e-54 218.0 324 42.9
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 1.1e-54 218.0 324 42.9
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 2.4e-54 216.9 320 46.2
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 6.8e-54 215.3 324 43.2
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 8.9e-54 214.9 321 44.2
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 3.4e-53 213.0 318 45.6
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 4.4e-53 212.6 321 42.4
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 5.8e-53 212.2 321 42.4
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 7.6e-53 211.8 324 42.0
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 7.6e-53 211.8 321 43.0
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 3.8e-52 209.5 321 41.7
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 4.3e-48 196.1 322 42.5
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 1.3e-41 174.5 205 52.7
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 3.3e-40 169.9 320 38.4
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 1.6e-39 167.5 267 43.1
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 2.0e-37 160.6 185 53.0
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 1.3e-36 157.9 322 36.6
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 3.2e-35 153.3 203 50.2
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 2.1e-34 150.6 309 38.5
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 6.0e-34 149.1 159 53.5
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 6.0e-26 122.5 306 35.0
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 5.6e-24 115.9 104 56.7
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 5.8e-21 105.9 175 42.9
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 7.9e-18 95.5 162 40.1
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 3.9e-17 93.2 162 39.5
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 5.7e-16 89.4 82 58.5
SHI29124 Sapria himalayana HOM05D006028 ORTHO05D007784 8.2e-15 85.5 178 34.3
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 1.2e-13 81.6 71 56.3
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 2.6e-13 80.5 84 51.2
CBR_g37698 Chara braunii HOM05D006028 ORTHO05D007784 6.5e-12 75.9 436 25.9
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 8.5e-12 75.5 64 56.2
Psat0s1013g0040 Pisum sativum HOM05D006028 ORTHO05D007784 7.2e-11 72.4 66 57.6
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 5.1e-09 66.2 67 49.3
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 4.3e-08 63.2 64 48.4
Gohir.A01G231820 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.3e-07 61.6 66 47.0
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.4e-06 58.2 65 46.2
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.8e-06 57.8 98 34.7
Gohir.D03G000201 Gossypium hirsutum HOM05D006028 ORTHO05D048139 9.1e-06 55.5 37 70.3
Gorai.003G000500 Gossypium raimondii HOM05D006028 ORTHO05D048139 9.1e-06 55.5 37 70.3


User provided reference genes

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