Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 3.3e-138 495.0 237 100.0
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 1.8e-99 366.3 240 73.8
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 3.9e-99 365.2 239 72.0
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 2.9e-94 349.0 238 71.0
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 2.5e-93 345.9 244 69.7
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 7.9e-92 340.9 204 78.4
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 1.1e-90 337.0 241 69.7
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 3.8e-86 322.0 235 67.7
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 3.2e-85 318.9 240 66.2
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 3.0e-83 312.4 239 62.3
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 5.7e-82 308.1 240 63.3
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 1.3e-81 307.0 240 63.3
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 1.2e-76 290.4 235 63.4
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 5.2e-75 285.0 228 61.8
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 7.7e-63 244.6 175 67.4
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 3.5e-55 219.2 240 46.2
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 3.5e-55 219.2 240 46.2
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 1.0e-54 217.6 221 49.8
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 5.0e-54 215.3 226 46.0
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 4.2e-53 212.2 207 48.3
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 1.2e-52 210.7 213 48.8
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 1.2e-52 210.7 231 45.9
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 1.6e-52 210.3 193 50.3
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 3.6e-52 209.1 205 47.8
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.4e-51 207.2 212 46.2
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.8e-51 206.8 217 45.6
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 6.8e-51 204.9 204 47.1
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 8.9e-51 204.5 206 48.1
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.5e-50 203.8 204 46.6
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.5e-50 203.8 207 47.3
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.5e-50 203.8 207 47.3
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 2.6e-50 203.0 205 46.8
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 9.8e-50 201.1 197 47.2
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 1.3e-49 200.7 199 47.2
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.7e-49 200.3 202 46.0
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 2.2e-49 199.9 190 47.4
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 2.2e-49 199.9 238 42.0
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.9e-49 198.7 218 44.5
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.9e-49 198.7 218 44.5
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 6.3e-49 198.4 204 45.1
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 8.3e-49 198.0 190 47.9
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 8.3e-49 198.0 202 45.5
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 1.1e-48 197.6 204 45.6
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 1.1e-48 197.6 204 45.6
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 1.1e-48 197.6 202 45.5
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 2.4e-48 196.4 219 45.2
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 3.2e-48 196.1 204 45.1
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 4.1e-48 195.7 204 45.1
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 4.1e-48 195.7 205 44.9
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 9.2e-48 194.5 206 48.5
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-47 193.7 186 50.0
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 2.7e-47 193.0 200 46.5
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 4.5e-47 192.2 204 44.1
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.0e-46 191.0 200 45.5
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 1.0e-46 191.0 233 40.3
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 2.3e-46 189.9 201 45.3
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 5.0e-46 188.7 201 45.8
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 6.6e-46 188.3 197 44.2
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 6.6e-46 188.3 197 44.2
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 6.6e-46 188.3 222 44.6
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 8.6e-46 188.0 198 45.5
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 8.6e-46 188.0 194 45.9
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 1.5e-45 187.2 197 45.2
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 2.5e-45 186.4 197 45.2
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 2.5e-45 186.4 192 45.3
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 3.3e-45 186.0 197 44.7
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 3.3e-45 186.0 189 47.1
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 4.3e-45 185.7 197 44.7
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 4.3e-45 185.7 197 44.7
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 4.3e-45 185.7 214 41.6
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 5.6e-45 185.3 198 46.0
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 5.6e-45 185.3 190 46.8
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 7.3e-45 184.9 190 46.3
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 7.3e-45 184.9 198 43.4
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 9.5e-45 184.5 195 45.6
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 9.5e-45 184.5 224 42.0
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 2.8e-44 183.0 230 42.2
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 3.6e-44 182.6 220 44.1
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 4.7e-44 182.2 190 45.8
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 8.0e-44 181.4 204 44.1
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 8.0e-44 181.4 210 43.3
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 2.3e-43 179.9 179 45.8
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 2.3e-43 179.9 168 48.2
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.3e-43 179.9 163 50.9
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 5.2e-43 178.7 199 43.7
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 6.8e-43 178.3 189 44.4
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.2e-42 177.6 241 39.0
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 2.0e-42 176.8 200 40.5
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 4.4e-42 175.6 210 43.8
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 5.8e-42 175.3 197 41.6
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 5.8e-42 175.3 213 39.4
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.3e-41 174.1 200 41.0
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 3.7e-41 172.6 197 40.1
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 6.4e-41 171.8 210 39.5
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 8.3e-41 171.4 195 41.5
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 1.1e-40 171.0 198 42.4
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 1.4e-40 170.6 198 41.4
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 1.9e-40 170.2 217 39.6
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.9e-40 170.2 222 38.3
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.9e-40 170.2 224 39.7
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 2.4e-40 169.9 198 42.4
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.6e-39 165.6 226 41.2
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 4.6e-39 165.6 202 41.1
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 6.0e-39 165.2 203 38.4
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 7.8e-39 164.9 178 44.4
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 1.0e-38 164.5 194 43.3
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 2.3e-38 163.3 202 40.6
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 2.3e-38 163.3 157 51.0
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.0e-38 162.2 194 42.8
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 5.0e-38 162.2 164 48.2
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 6.6e-38 161.8 209 42.1
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 8.6e-38 161.4 196 37.2
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.5e-37 160.6 183 43.2
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.9e-37 160.2 209 40.7
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 2.5e-37 159.8 196 43.9
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 9.5e-37 157.9 197 43.1
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 1.6e-36 157.1 154 46.1
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.4e-35 154.1 243 38.3
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 1.8e-35 153.7 226 39.8
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 2.3e-35 153.3 244 35.2
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 5.2e-35 152.1 202 38.6
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 6.8e-35 151.8 204 37.3
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 8.9e-35 151.4 154 47.4
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 4.4e-34 149.1 154 46.8
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 7.5e-34 148.3 222 37.8
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.3e-33 147.5 153 46.4
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.2e-33 146.7 218 33.9
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 2.9e-33 146.4 203 35.0
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 4.9e-33 145.6 199 34.7
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 6.4e-33 145.2 196 38.3
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 6.4e-33 145.2 221 38.5
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 5.4e-32 142.1 153 45.8
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 3.5e-31 139.4 147 45.6
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 4.6e-31 139.0 201 36.3
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 4.6e-31 139.0 191 39.3
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 4.6e-31 139.0 174 38.5
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 5.1e-30 135.6 190 38.4
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 6.6e-30 135.2 147 44.9
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 1.2e-28 131.0 149 45.6
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.6e-28 130.6 202 37.1
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 6.2e-28 128.6 114 47.4
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 5.2e-27 125.6 117 51.3
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.2e-26 124.4 214 35.0
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 2.6e-26 123.2 187 34.8
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.3e-22 110.2 164 36.0
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 3.9e-22 109.4 165 33.9
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 3.3e-21 106.3 201 30.8
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.6e-20 104.0 211 28.9
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.1e-16 91.3 86 46.5
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.2e-15 87.8 132 35.6
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.1e-15 87.0 128 35.9
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 3.0e-14 83.2 222 28.4
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 8.7e-14 81.6 174 28.7
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 8.7e-14 81.6 168 30.4
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 4.8e-12 75.9 180 26.7
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 6.9e-11 72.0 88 43.2
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 8.4e-09 65.1 51 54.9
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 8.4e-09 65.1 56 50.0
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 1.1e-08 64.7 73 43.8
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 1.2e-07 61.2 76 38.2
Lj1g0021452 Lotus japonicus HOM05D004214 ORTHO05D004963 6.0e-07 58.9 50 54.0


User provided reference genes

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