Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 4.6e-135 484.6 244 100.0
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 4.8e-92 341.7 243 66.7
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 3.1e-91 339.0 249 68.3
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 4.1e-67 258.8 193 60.1
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.2e-58 230.7 234 51.3
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 3.6e-47 192.6 257 45.5
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 3.8e-41 172.6 228 39.9
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 1.1e-40 171.0 224 40.2
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 2.5e-40 169.9 230 39.1
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 9.5e-40 167.9 219 40.6
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 2.3e-38 163.3 202 40.6
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 1.2e-37 161.0 218 40.4
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 1.5e-37 160.6 228 39.5
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 2.0e-37 160.2 202 41.1
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 4.4e-37 159.1 200 45.0
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 5.7e-37 158.7 190 41.6
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 5.7e-37 158.7 227 37.9
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 1.7e-36 157.1 196 42.3
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 1.7e-36 157.1 212 40.6
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 1.7e-36 157.1 212 40.6
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 8.3e-36 154.8 186 41.4
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 1.4e-35 154.1 213 39.9
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 3.1e-35 152.9 226 35.8
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 4.1e-35 152.5 189 38.6
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 4.1e-35 152.5 198 38.9
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 4.1e-35 152.5 199 40.2
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 5.4e-35 152.1 227 37.0
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 7.0e-35 151.8 196 37.8
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 1.6e-34 150.6 206 37.4
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 2.0e-34 150.2 226 35.4
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 2.0e-34 150.2 198 40.9
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 2.0e-34 150.2 194 39.2
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 2.0e-34 150.2 194 39.2
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 2.0e-34 150.2 224 35.7
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 2.0e-34 150.2 230 37.0
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 2.0e-34 150.2 194 39.7
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 3.5e-34 149.4 198 38.9
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 5.9e-34 148.7 189 38.1
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 7.8e-34 148.3 190 37.9
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 7.8e-34 148.3 189 38.1
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 7.8e-34 148.3 212 36.8
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.0e-33 147.9 189 38.6
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 1.0e-33 147.9 198 39.4
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 1.3e-33 147.5 198 38.9
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.7e-33 147.1 189 39.2
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 2.9e-33 146.4 189 37.6
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 2.9e-33 146.4 189 37.6
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 3.8e-33 146.0 189 39.2
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 3.8e-33 146.0 198 36.9
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 3.8e-33 146.0 194 37.6
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 5.0e-33 145.6 196 37.2
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 5.0e-33 145.6 189 39.2
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 5.0e-33 145.6 189 39.2
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 5.0e-33 145.6 199 36.7
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 5.0e-33 145.6 198 36.9
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 5.0e-33 145.6 203 37.9
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 6.6e-33 145.2 193 40.4
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 6.6e-33 145.2 194 38.1
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 6.6e-33 145.2 232 33.2
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 8.6e-33 144.8 189 37.6
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 8.6e-33 144.8 189 39.2
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 1.1e-32 144.4 189 38.6
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 1.5e-32 144.1 214 36.4
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 1.5e-32 144.1 190 38.4
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 1.5e-32 144.1 198 38.4
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 2.5e-32 143.3 194 39.7
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 2.5e-32 143.3 198 40.4
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.5e-32 143.3 194 38.7
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 3.3e-32 142.9 189 38.6
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 3.3e-32 142.9 198 38.9
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 4.3e-32 142.5 199 37.7
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 4.3e-32 142.5 189 38.1
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 4.3e-32 142.5 196 36.2
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 5.6e-32 142.1 156 41.0
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 5.6e-32 142.1 189 37.6
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 5.6e-32 142.1 195 38.5
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 5.6e-32 142.1 178 39.3
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 7.3e-32 141.7 202 39.6
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 7.3e-32 141.7 202 39.6
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 9.5e-32 141.4 198 37.9
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 1.2e-31 141.0 189 36.5
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 6.1e-31 138.7 194 39.7
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 6.1e-31 138.7 166 40.4
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 6.1e-31 138.7 192 35.9
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 1.0e-30 137.9 235 33.2
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 2.3e-30 136.7 190 37.4
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 3.1e-30 136.3 194 36.1
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.1e-30 136.3 209 35.4
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 3.1e-30 136.3 166 39.8
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 4.0e-30 136.0 183 38.3
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 8.9e-30 134.8 215 34.4
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 3.4e-29 132.9 195 35.9
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 3.4e-29 132.9 192 35.4
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 7.5e-29 131.7 192 34.9
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.7e-28 130.6 199 35.2
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.7e-28 130.6 185 37.3
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 2.9e-28 129.8 223 35.0
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 2.9e-28 129.8 193 40.9
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 3.7e-28 129.4 194 35.6
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 6.4e-28 128.6 156 37.8
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 6.4e-28 128.6 245 32.7
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 4.1e-27 125.9 165 39.4
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 5.4e-27 125.6 161 37.9
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 9.2e-27 124.8 185 35.1
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 9.2e-27 124.8 156 37.8
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 1.2e-26 124.4 189 35.4
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 1.6e-26 124.0 209 34.4
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 4.6e-26 122.5 217 32.3
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.0e-25 121.3 230 34.3
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.0e-25 121.3 225 32.4
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 1.3e-25 120.9 195 32.3
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 2.3e-25 120.2 172 37.8
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 2.3e-25 120.2 165 35.8
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 3.9e-25 119.4 134 41.0
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.0e-25 119.0 177 36.2
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 8.6e-25 118.2 134 42.5
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.5e-24 116.7 186 34.4
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.3e-24 116.3 200 34.0
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 4.3e-24 115.9 183 39.3
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 4.3e-24 115.9 181 34.8
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.2e-23 114.4 217 30.4
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 1.6e-23 114.0 192 33.3
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 3.6e-23 112.8 224 32.6
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 3.1e-22 109.8 201 32.3
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 4.0e-22 109.4 189 33.3
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 8.9e-22 108.2 218 27.5
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 1.2e-21 107.8 194 32.5
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 2.0e-21 107.1 156 36.5
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 4.4e-21 105.9 132 37.1
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 4.4e-21 105.9 144 36.8
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 5.8e-21 105.5 144 36.8
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 7.5e-21 105.1 163 33.1
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.3e-20 104.4 183 34.4
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 1.3e-20 104.4 143 37.1
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 1.7e-20 104.0 202 28.2
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.2e-20 103.6 195 27.7
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.9e-20 103.2 143 36.4
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 3.7e-20 102.8 110 42.7
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 3.5e-18 96.3 205 28.3
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 6.0e-18 95.5 137 35.8
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 7.8e-18 95.1 137 38.0
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.7e-17 94.0 194 32.5
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.5e-16 90.9 100 42.0
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.9e-16 90.5 100 42.0
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 3.3e-16 89.7 157 31.2
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 5.6e-16 89.0 199 28.1
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 9.5e-16 88.2 152 31.6
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 6.2e-15 85.5 158 30.4
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 3.1e-14 83.2 80 46.2
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 1.7e-12 77.4 165 26.7
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 2.2e-12 77.0 189 29.6
Lj1g0021452 Lotus japonicus HOM05D004214 ORTHO05D004963 3.7e-12 76.3 51 66.7
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 8.3e-12 75.1 238 26.5
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.1e-11 74.7 195 28.7
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 5.4e-11 72.4 144 33.3
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 6.8e-06 55.5 50 48.0


User provided reference genes

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