Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 0.0e+00 2352.8 1432 100.0
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 0.0e+00 1736.9 1447 75.9
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 0.0e+00 1578.9 1511 70.9
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 0.0e+00 1552.3 1397 73.5
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 0.0e+00 1537.7 1447 71.7
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 0.0e+00 1528.1 1453 70.5
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 0.0e+00 1528.1 1446 68.9
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 0.0e+00 1490.7 1450 66.5
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 0.0e+00 1464.5 1467 68.8
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 0.0e+00 1400.6 1482 63.0
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 0.0e+00 1352.4 1492 61.8
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 0.0e+00 1233.0 1648 54.0
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 0.0e+00 1094.0 1517 53.8
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 6.5e-306 1054.7 1500 51.8
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 5.5e-305 1051.6 1493 51.6
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 4.4e-302 1042.0 1576 50.1
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 1.7e-301 1040.0 1471 50.6
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 5.9e-299 1031.6 1500 51.3
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 7.4e-294 1014.6 1471 49.7
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 2.4e-292 1009.6 1515 49.9
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 5.0e-290 1001.9 1508 49.5
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 4.4e-286 988.8 1445 49.9
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 1.3e-285 987.3 1515 49.5
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 1.1e-284 984.2 1484 48.7
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 4.5e-283 978.8 1485 52.1
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 5.9e-283 978.4 1470 49.5
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 7.7e-283 978.0 1528 49.7
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 2.2e-282 976.5 1464 51.2
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 5.0e-282 975.3 1481 49.2
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 8.5e-282 974.5 1414 50.1
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 4.2e-281 972.2 1537 48.3
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 4.2e-281 972.2 1496 50.5
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 2.3e-279 966.5 1471 50.1
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 5.2e-279 965.3 1453 49.1
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 2.0e-278 963.4 1476 48.8
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 3.4e-278 962.6 1461 50.7
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 2.4e-276 956.4 1490 49.9
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 2.4e-276 956.4 1555 47.2
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.1e-273 947.6 1493 47.8
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 2.8e-272 943.0 1495 49.1
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 3.6e-272 942.6 1529 47.4
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 8.0e-272 941.4 1489 50.7
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 9.8e-270 934.5 1486 50.5
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 8.0e-264 914.8 1524 48.1
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 7.5e-262 908.3 1561 45.9
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 1.7e-261 907.1 1506 47.3
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 2.8e-256 889.8 1470 46.2
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 1.8e-255 887.1 1483 48.2
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 6.8e-255 885.2 1487 48.8
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 2.3e-250 870.2 1468 45.1
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 1.8e-247 860.5 1489 44.9
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 3.1e-247 859.8 1488 45.9
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 1.7e-245 854.0 1477 47.1
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 2.3e-242 843.6 1528 44.8
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 5.1e-242 842.4 1504 45.5
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 7.3e-241 838.6 1488 47.7
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 8.9e-239 831.6 1488 44.2
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 6.0e-235 818.9 1529 43.2
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 1.7e-234 817.4 1463 46.2
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 9.6e-233 811.6 1529 44.3
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 6.2e-232 808.9 1489 47.4
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 2.4e-231 807.0 1327 46.0
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 4.4e-230 802.7 1504 46.8
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 5.8e-230 802.4 1471 45.3
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 6.4e-229 798.9 1451 43.4
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 7.8e-227 792.0 1505 45.5
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 2.3e-226 790.4 1394 44.5
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 2.8e-224 783.5 1549 42.9
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 2.6e-222 776.9 715 65.5
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 3.4e-222 776.5 1470 44.8
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 4.2e-220 769.6 1250 48.6
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 1.3e-218 764.6 1491 42.4
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.1e-217 761.5 1542 42.9
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 1.5e-217 761.1 1517 46.0
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 3.7e-216 756.5 1508 44.6
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 1.4e-212 744.6 1506 44.2
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 7.1e-212 742.3 1508 44.3
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 4.8e-208 729.6 1483 45.1
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 4.0e-207 726.5 1534 40.5
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 1.2e-206 724.9 1478 44.6
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 2.0e-206 724.2 1470 45.8
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 2.0e-206 724.2 1470 45.8
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 1.1e-204 718.4 1479 44.6
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 6.1e-203 712.6 1540 41.4
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 6.7e-202 709.1 1482 45.1
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 2.4e-199 700.7 1455 43.8
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 2.4e-199 700.7 1412 42.7
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 5.5e-196 689.5 1489 43.0
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 7.2e-196 689.1 1278 43.7
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 5.1e-194 682.9 1515 43.0
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 1.4e-188 664.8 1516 41.1
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 3.3e-185 653.7 1452 40.4
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 1.1e-175 622.1 1430 42.9
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 2.4e-175 620.9 1475 38.6
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 4.1e-167 593.6 801 50.2
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 6.8e-154 549.7 1461 39.8
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 2.5e-148 531.2 1243 36.0
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.2e-147 528.9 585 61.9
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 1.3e-144 518.8 1448 35.4
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 1.6e-142 511.9 1310 36.9
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 4.6e-142 510.4 1541 35.3
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.8e-138 498.4 1304 37.9
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 4.4e-129 467.2 1515 36.7
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 2.6e-121 441.4 828 42.8
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 1.5e-116 425.6 1326 34.4
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 5.6e-116 423.7 620 47.1
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 1.3e-88 332.8 1514 32.6
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 7.0e-66 257.3 1553 25.2
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 9.4e-63 246.9 415 51.8
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 1.5e-60 239.6 835 32.0
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 4.4e-60 238.0 1557 25.2
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 1.4e-58 233.0 846 34.8
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 9.1e-58 230.3 268 43.7
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 4.5e-57 228.0 702 32.2
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 1.1e-55 223.4 1187 28.6
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 2.0e-44 186.0 257 50.2
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 4.3e-39 168.3 492 41.5
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 4.9e-35 154.8 176 47.2
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 5.4e-34 151.4 92 71.7
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 4.3e-31 141.7 224 46.9
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 5.6e-31 141.4 366 36.1
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 2.8e-30 139.0 124 65.3
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 1.4e-29 136.7 500 34.6
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 1.3e-27 130.2 277 41.5
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 7.0e-26 124.4 64 95.3
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.6e-25 123.2 281 53.4
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 8.9e-21 107.5 111 53.2
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 1.2e-20 107.1 71 67.6
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 9.2e-18 97.4 69 65.2
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 6.0e-17 94.7 497 35.6
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 6.0e-17 94.7 101 50.5
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 1.9e-15 89.7 303 31.0
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 3.6e-14 85.5 226 26.5
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 8.1e-14 84.3 254 38.2
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 1.8e-13 83.2 78 52.6
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 3.1e-13 82.4 93 54.8
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 6.8e-13 81.3 80 53.8
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 1.7e-11 76.6 50 64.0
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.9e-11 75.9 50 66.0
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 2.7e-09 69.3 89 49.4
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.5e-09 68.9 130 44.6
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 1.0e-08 67.4 85 40.0
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 1.0e-08 67.4 315 31.7
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 1.3e-08 67.0 57 57.9
BcaB07g33689 Brassica carinata HOM05D004594 ORTHO05D021612 7.3e-07 61.2 61 52.5
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.8e-06 59.3 103 36.9


User provided reference genes

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