Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 0.0e+00 1468.0 737 100.0
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 0.0e+00 1311.2 728 90.5
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 0.0e+00 1272.3 729 88.2
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 0.0e+00 1265.8 750 85.7
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 0.0e+00 1265.8 749 85.6
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 0.0e+00 1265.4 749 85.8
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 0.0e+00 1255.4 734 86.0
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 0.0e+00 1246.9 743 85.2
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 0.0e+00 1242.6 753 83.8
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 0.0e+00 1234.2 736 84.4
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 0.0e+00 1176.8 770 78.3
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 0.0e+00 1168.7 775 76.6
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 0.0e+00 1159.4 755 78.9
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 0.0e+00 1157.1 762 76.9
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 0.0e+00 1156.4 759 77.2
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 0.0e+00 1155.2 757 77.7
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 0.0e+00 1152.9 771 76.9
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 0.0e+00 1151.0 756 77.0
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 0.0e+00 1142.5 752 77.1
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 0.0e+00 1138.3 756 77.5
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 0.0e+00 1135.6 760 77.0
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 0.0e+00 1133.6 764 77.2
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 0.0e+00 1124.8 756 77.0
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 0.0e+00 1120.5 766 74.7
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 0.0e+00 1118.2 759 75.4
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 0.0e+00 1112.4 756 73.8
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 0.0e+00 1109.4 770 73.2
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 0.0e+00 1107.8 760 74.1
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 0.0e+00 1107.0 728 76.2
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1107.0 761 75.7
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 0.0e+00 1107.0 770 73.1
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 0.0e+00 1105.5 762 73.9
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 0.0e+00 1104.0 760 74.3
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 0.0e+00 1102.8 761 74.8
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 0.0e+00 1102.0 754 74.3
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 0.0e+00 1100.1 746 73.7
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 0.0e+00 1099.3 754 74.1
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1098.6 782 73.9
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 0.0e+00 1097.0 775 72.9
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 0.0e+00 1089.3 755 72.8
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 0.0e+00 1083.2 765 72.3
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1080.9 809 71.3
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 0.0e+00 1080.9 759 72.7
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1080.5 768 72.0
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 0.0e+00 1078.5 768 71.7
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 5.0e-312 1073.9 748 71.7
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 5.0e-312 1073.9 775 71.7
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 2.5e-311 1071.6 770 71.0
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 1.0e-307 1059.7 770 72.9
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 1.4e-307 1059.3 751 70.8
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 3.9e-307 1057.7 770 72.7
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 2.6e-306 1055.0 755 72.2
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 1.4e-304 1049.3 752 71.1
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 7.2e-301 1036.9 762 69.9
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 3.6e-300 1034.6 770 69.4
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 7.0e-296 1020.4 753 68.9
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 1.2e-295 1019.6 753 69.5
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 2.2e-294 1015.4 746 70.1
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 2.9e-294 1015.0 761 69.6
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 1.9e-293 1012.3 762 69.2
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 5.5e-293 1010.7 753 69.1
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 1.2e-292 1009.6 780 67.7
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 3.6e-292 1008.1 753 68.4
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 3.0e-291 1005.0 755 68.5
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 3.0e-291 1005.0 755 68.5
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 8.8e-291 1003.4 753 68.8
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 1.2e-290 1003.0 755 68.5
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 2.0e-290 1002.3 755 70.2
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 1.1e-288 996.5 739 68.7
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 3.1e-288 995.0 750 69.1
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 7.0e-288 993.8 922 60.2
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 4.5e-287 991.1 750 67.7
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 7.7e-287 990.3 779 66.4
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 1.3e-286 989.6 726 72.9
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 3.8e-286 988.0 761 67.9
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 6.1e-284 980.7 758 67.3
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 1.2e-282 976.5 753 67.1
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 1.2e-282 976.5 766 67.8
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 2.4e-280 968.8 756 66.5
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 2.7e-279 965.3 726 67.9
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 2.2e-273 945.7 514 88.3
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 6.4e-273 944.1 510 88.6
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 9.2e-272 940.3 666 73.0
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 8.6e-270 933.7 752 64.6
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.6e-266 922.2 636 76.1
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 2.6e-266 922.2 734 65.3
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 1.3e-265 919.8 729 65.8
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 6.4e-265 917.5 755 63.0
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 1.3e-262 909.8 514 85.0
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 5.8e-250 867.8 751 60.9
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 7.6e-250 867.5 690 64.8
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 5.6e-245 851.3 757 61.2
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 3.2e-240 835.5 746 60.3
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 3.0e-238 828.9 752 60.8
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 3.8e-233 812.0 759 56.0
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 1.9e-232 809.7 813 52.8
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 1.1e-227 793.9 621 64.9
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 1.8e-222 776.5 843 49.9
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 3.9e-214 748.8 760 52.0
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 5.0e-209 731.9 744 53.8
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 1.8e-203 713.4 745 52.3
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 3.4e-202 709.1 739 52.2
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.4e-200 703.7 736 51.9
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 9.4e-200 701.0 745 51.7
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 7.4e-197 691.4 753 52.3
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 1.8e-195 686.8 721 51.2
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 3.6e-191 672.5 677 51.6
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 1.0e-174 617.8 334 87.1
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 8.0e-159 565.1 459 67.5
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 7.8e-130 468.8 418 57.2
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 3.1e-126 456.8 441 57.8
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 1.2e-101 375.2 217 82.5
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 1.3e-100 371.7 242 76.0
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 2.0e-93 347.8 583 34.6
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 3.0e-89 334.0 182 87.4
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 2.2e-87 327.8 652 31.9
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 1.4e-81 308.5 678 31.6
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 1.4e-81 308.5 198 85.4
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 1.8e-73 281.6 277 58.8
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 2.2e-71 274.6 364 47.3
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 1.6e-66 258.5 238 63.0
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 3.6e-66 257.3 238 62.6
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 2.2e-60 238.0 130 86.2
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 2.1e-58 231.5 166 68.7
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 8.6e-52 209.5 114 87.7
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.1e-50 204.9 132 78.0
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 2.6e-48 198.0 126 77.0
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 3.7e-39 167.5 163 62.0
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 1.6e-34 152.1 165 55.2
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 1.6e-29 135.6 96 69.8
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 9.5e-27 126.3 141 46.8
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 3.6e-18 97.8 131 48.9
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 4.7e-18 97.4 55 74.5
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 4.7e-18 97.4 66 72.7
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 5.2e-17 94.0 523 21.6
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 1.1e-14 86.3 65 61.5
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 1.2e-13 82.8 148 38.5
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 6.0e-13 80.5 473 20.9
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 5.6e-11 73.9 477 20.8
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 1.2e-08 66.2 348 22.4
C03p50580 Brassica napus HOM05D004811 ORTHO05D017514 1.5e-08 65.9 112 40.2
BolC3t17347H Brassica oleracea HOM05D004811 ORTHO05D017514 1.5e-08 65.9 108 41.7
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 1.5e-08 65.9 369 22.8
Gohir.A02G097201 Gossypium hirsutum HOM05D004811 ORTHO05D006888 2.6e-08 65.1 88 44.3
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 2.6e-08 65.1 59 52.5
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 3.4e-08 64.7 107 38.3
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 3.4e-08 64.7 107 38.3
Zm00001eb007090 Zea mays HOM05D002279 ORTHO05D002644 3.4e-08 64.7 346 21.4
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 9.9e-08 63.2 537 20.9
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 2.2e-07 62.0 509 21.8
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 2.2e-07 62.0 408 22.3
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 4.9e-07 60.8 355 21.4
BcaC04g19678 Brassica carinata HOM05D004811 ORTHO05D017514 6.4e-07 60.5 105 35.2
Sed0000937 Sechium edule HOM05D004811 ORTHO05D044609 8.4e-07 60.1 52 61.5
ClCG04G004810 Citrullus lanatus HOM05D004811 ORTHO05D044609 1.1e-06 59.7 102 39.2
Gohir.D01G069250 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.4e-06 59.3 59 50.8
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 4.2e-06 57.8 592 18.4


User provided reference genes

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