Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 9.5e-80 300.1 145 100.0
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 1.9e-72 275.8 145 91.0
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 2.8e-71 271.9 145 89.7
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 4.7e-71 271.2 145 91.0
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 4.7e-71 271.2 145 90.3
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 2.6e-69 265.4 145 86.2
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 8.3e-68 260.4 146 86.3
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 5.4e-67 257.7 145 84.8
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 1.2e-66 256.5 146 84.9
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 1.2e-66 256.5 132 91.7
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 6.6e-65 250.8 148 83.1
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 6.6e-65 250.8 146 84.2
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 1.1e-64 250.0 142 83.1
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.1e-64 250.0 141 83.0
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 1.5e-64 249.6 146 82.2
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 4.3e-64 248.1 145 82.1
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 4.3e-64 248.1 145 82.1
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 9.5e-64 246.9 148 81.8
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 1.2e-63 246.5 142 82.4
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 2.8e-63 245.4 142 82.4
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 3.6e-63 245.0 146 80.8
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 4.7e-63 244.6 143 82.5
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 1.1e-62 243.4 142 80.3
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 4.0e-62 241.5 145 79.3
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 6.8e-62 240.7 142 81.0
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 8.9e-62 240.4 143 81.8
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.2e-61 240.0 146 78.1
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 2.0e-61 239.2 146 78.8
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.0e-61 239.2 146 78.1
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 4.4e-61 238.0 146 78.8
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 7.5e-61 237.3 146 77.4
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 7.5e-61 237.3 150 76.7
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 9.9e-61 236.9 149 77.9
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.3e-60 236.5 144 81.2
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 1.7e-60 236.1 150 78.0
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 2.2e-60 235.7 146 78.1
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 4.9e-60 234.6 141 80.1
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 6.4e-60 234.2 153 77.8
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 8.3e-60 233.8 144 78.5
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 1.1e-59 233.4 133 81.2
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 1.4e-59 233.0 146 78.8
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 2.4e-59 232.3 143 77.6
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 3.2e-59 231.9 145 75.9
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 3.2e-59 231.9 145 75.2
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 4.1e-59 231.5 145 75.9
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 5.4e-59 231.1 119 89.1
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 7.1e-59 230.7 162 73.5
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 9.2e-59 230.3 143 76.2
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 9.2e-59 230.3 146 74.7
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.2e-58 229.9 145 75.9
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 1.2e-58 229.9 124 84.7
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 1.2e-58 229.9 148 75.7
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 1.2e-58 229.9 148 75.7
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 1.6e-58 229.6 147 75.5
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 2.1e-58 229.2 150 74.7
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 2.1e-58 229.2 146 74.7
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 2.1e-58 229.2 145 73.8
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 2.7e-58 228.8 136 77.9
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 2.7e-58 228.8 147 74.1
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 2.7e-58 228.8 136 80.9
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.5e-58 228.4 133 79.7
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.5e-58 228.4 133 79.7
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 4.6e-58 228.0 133 79.7
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 6.0e-58 227.6 146 76.7
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 7.8e-58 227.3 141 78.7
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.0e-57 226.9 148 75.0
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 1.3e-57 226.5 148 74.3
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 1.3e-57 226.5 149 75.2
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 1.3e-57 226.5 139 77.0
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 1.3e-57 226.5 146 73.3
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 1.7e-57 226.1 149 74.5
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.7e-57 226.1 147 74.1
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.7e-57 226.1 147 74.1
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 2.3e-57 225.7 144 77.1
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 2.3e-57 225.7 227 56.4
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 3.0e-57 225.3 147 74.8
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 3.0e-57 225.3 139 75.5
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 3.9e-57 224.9 140 76.4
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 5.1e-57 224.6 139 77.0
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 6.6e-57 224.2 139 76.3
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 6.6e-57 224.2 139 76.3
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 8.6e-57 223.8 153 72.5
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 8.6e-57 223.8 147 74.8
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.5e-56 223.0 147 75.5
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 1.9e-56 222.6 146 74.0
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.9e-56 222.6 148 72.3
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 3.3e-56 221.9 147 74.1
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 3.6e-55 218.4 174 63.2
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 3.6e-55 218.4 174 63.2
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 3.6e-55 218.4 152 70.4
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 4.7e-55 218.0 118 82.2
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 1.4e-54 216.5 146 72.6
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 2.4e-54 215.7 146 74.0
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 2.4e-54 215.7 135 74.8
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 3.1e-54 215.3 134 74.6
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 5.2e-54 214.5 131 76.3
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 6.8e-54 214.2 131 77.9
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 1.2e-53 213.4 145 68.3
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 2.0e-53 212.6 131 74.8
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 2.2e-52 209.1 131 76.3
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 2.9e-52 208.8 149 69.8
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 3.8e-52 208.4 140 72.1
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 6.4e-52 207.6 120 81.7
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 6.4e-52 207.6 149 66.4
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 8.4e-52 207.2 114 82.5
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 1.9e-51 206.1 144 73.6
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 2.4e-51 205.7 130 75.4
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 3.2e-51 205.3 112 80.4
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 3.2e-51 205.3 129 79.1
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 7.1e-51 204.1 114 79.8
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 6.0e-50 201.1 139 70.5
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 1.9e-48 196.1 156 68.6
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 2.5e-48 195.7 128 71.1
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.3e-48 195.3 104 81.7
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 9.6e-48 193.7 104 80.8
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 9.6e-48 193.7 118 71.2
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.8e-47 192.2 171 62.0
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 3.6e-47 191.8 105 81.0
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 1.4e-46 189.9 113 84.1
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 9.9e-45 183.7 147 65.3
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.4e-43 179.1 151 63.6
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 3.2e-43 178.7 111 78.4
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 1.5e-40 169.9 91 79.1
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 1.6e-39 166.4 152 61.2
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 2.6e-37 159.1 114 70.2
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 3.4e-37 158.7 101 76.2
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 6.4e-36 154.5 78 83.3
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.1e-34 149.4 111 69.4
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.9e-32 142.9 99 73.7
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.3e-28 130.2 104 60.6
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 9.3e-27 124.0 86 74.4
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 2.1e-26 122.9 61 85.2
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 8.7e-25 117.5 64 78.1
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 5.5e-19 98.2 86 52.3
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 1.8e-17 93.2 52 80.8
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 5.1e-17 91.7 43 83.7
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 6.3e-15 84.7 72 70.8
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 1.8e-14 83.2 57 75.4
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 9.0e-14 80.9 52 67.3
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 2.5e-11 72.8 42 78.6
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 3.2e-11 72.4 38 89.5
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 7.9e-10 67.8 40 70.0
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.4e-09 67.0 49 65.3
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.3e-06 55.1 30 70.0


User provided reference genes

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