Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 2.3e-51 205.3 103 100.0
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 4.3e-42 174.5 97 87.6
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 8.0e-41 170.2 97 85.6
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 8.0e-41 170.2 97 84.5
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 7.5e-39 163.7 96 81.2
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 7.5e-39 163.7 97 81.4
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 1.7e-38 162.5 97 79.4
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 2.2e-38 162.2 97 80.4
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 2.9e-38 161.8 97 79.4
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 6.4e-38 160.6 97 79.4
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 1.7e-35 152.5 96 75.0
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 3.9e-35 151.4 96 75.0
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 1.5e-34 149.4 97 71.1
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 5.6e-34 147.5 97 72.2
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 3.6e-33 144.8 96 68.8
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 3.6e-33 144.8 97 70.1
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 6.2e-33 144.1 97 71.1
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 1.2e-31 139.8 97 68.0
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 2.0e-31 139.0 97 71.1
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 2.6e-31 138.7 97 68.0
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 4.4e-31 137.9 96 68.8
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 2.2e-30 135.6 95 67.4
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 2.9e-30 135.2 96 62.5
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 4.9e-30 134.4 97 63.9
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 4.9e-30 134.4 97 66.0
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 6.4e-30 134.0 91 70.3
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 1.4e-29 132.9 97 68.0
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.9e-29 132.5 97 66.0
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 1.9e-29 132.5 95 64.2
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 3.2e-29 131.7 97 69.1
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 3.2e-29 131.7 97 64.9
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 3.2e-29 131.7 96 65.6
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 3.2e-29 131.7 95 64.2
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 3.2e-29 131.7 97 63.9
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 4.1e-29 131.3 97 62.9
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 5.4e-29 131.0 97 61.9
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 7.1e-29 130.6 97 63.9
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 9.2e-29 130.2 97 66.0
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 9.2e-29 130.2 97 64.9
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 9.2e-29 130.2 95 64.2
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 1.2e-28 129.8 95 62.1
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 1.2e-28 129.8 97 62.9
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 1.2e-28 129.8 97 62.9
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 1.6e-28 129.4 127 52.0
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 1.6e-28 129.4 97 61.9
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 2.1e-28 129.0 97 64.9
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 2.1e-28 129.0 97 63.9
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 2.1e-28 129.0 95 63.2
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 2.7e-28 128.6 97 62.9
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 2.7e-28 128.6 95 63.2
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 2.7e-28 128.6 96 62.5
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 3.5e-28 128.3 96 62.5
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 7.8e-28 127.1 95 61.1
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 7.8e-28 127.1 97 63.9
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 1.0e-27 126.7 97 63.9
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 1.0e-27 126.7 97 61.9
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 1.3e-27 126.3 97 61.9
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 1.7e-27 125.9 95 62.1
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 2.3e-27 125.6 99 63.6
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 3.0e-27 125.2 97 59.8
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 3.0e-27 125.2 97 59.8
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 3.0e-27 125.2 97 62.9
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 3.0e-27 125.2 97 62.9
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 5.1e-27 124.4 97 62.9
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 5.1e-27 124.4 97 61.9
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 6.6e-27 124.0 95 61.1
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 1.1e-26 123.2 97 62.9
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.1e-26 123.2 97 61.9
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 1.5e-26 122.9 97 58.8
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 1.5e-26 122.9 97 60.8
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.5e-26 122.1 95 58.9
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 2.5e-26 122.1 97 56.7
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 2.5e-26 122.1 95 61.1
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 7.3e-26 120.6 97 59.8
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 7.3e-26 120.6 97 59.8
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 3.6e-25 118.2 95 58.9
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 3.6e-25 118.2 97 59.8
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 4.7e-25 117.9 89 65.2
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 6.2e-25 117.5 97 60.8
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 8.1e-25 117.1 95 60.0
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 1.4e-24 116.3 97 58.8
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 1.8e-24 115.9 117 48.7
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 6.8e-24 114.0 97 57.7
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 5.8e-23 110.9 96 57.3
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 7.6e-23 110.5 141 44.0
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 1.3e-22 109.8 97 53.6
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 4.9e-22 107.8 96 50.0
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 1.4e-21 106.3 98 53.1
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 2.4e-21 105.5 97 49.5
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 6.0e-20 100.9 139 43.2
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 1.5e-15 86.3 83 54.2
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 2.6e-15 85.5 58 70.7
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 1.3e-14 83.2 95 45.3
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 3.0e-11 72.0 39 76.9
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 3.0e-11 72.0 97 42.3
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 3.9e-11 71.6 40 72.5
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 6.6e-11 70.9 72 48.6
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 1.9e-10 69.3 95 40.0
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.9e-10 69.3 69 47.8
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.5e-10 68.9 69 47.8
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 5.6e-10 67.8 69 46.4
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.4e-08 63.2 69 43.5
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 2.4e-08 62.4 95 40.0
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 5.3e-08 61.2 69 43.5
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.3e-06 56.6 39 59.0
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 4.9e-06 54.7 39 56.4


User provided reference genes

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