Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 4.9e-70 267.7 137 100.0
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 1.0e-67 260.0 137 95.6
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 2.5e-66 255.4 137 93.4
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 3.1e-64 248.4 137 90.5
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 1.6e-57 226.1 140 84.3
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 1.1e-56 223.4 140 82.9
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 6.9e-56 220.7 140 82.9
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 1.2e-55 219.9 140 82.1
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 1.2e-55 219.9 140 82.1
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.2e-55 219.9 138 80.4
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.5e-55 219.5 139 80.6
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 3.4e-55 218.4 140 81.4
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 5.8e-55 217.6 138 79.0
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 1.3e-54 216.5 140 80.0
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 1.7e-54 216.1 140 82.9
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 8.4e-54 213.8 140 76.4
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 1.4e-53 213.0 140 78.6
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 1.4e-53 213.0 138 79.0
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.9e-53 212.6 140 80.7
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 7.1e-53 210.7 140 77.9
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 9.3e-53 210.3 139 77.7
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 2.1e-52 209.1 140 76.4
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 2.1e-52 209.1 138 79.0
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 2.7e-52 208.8 139 76.3
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.7e-52 208.8 140 76.4
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 2.7e-52 208.8 140 77.1
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 3.5e-52 208.4 141 76.6
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 3.5e-52 208.4 140 77.1
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 6.0e-52 207.6 133 80.5
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 7.9e-52 207.2 140 78.6
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 7.9e-52 207.2 140 75.7
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 1.3e-51 206.5 140 76.4
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.3e-51 206.5 140 76.4
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.8e-51 206.1 140 77.9
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 3.0e-51 205.3 136 76.5
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 3.0e-51 205.3 140 80.7
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 3.9e-51 204.9 140 76.4
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 5.1e-51 204.5 142 75.4
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.1e-51 204.5 140 74.3
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 8.7e-51 203.8 135 77.0
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 8.7e-51 203.8 138 74.6
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 8.7e-51 203.8 140 76.4
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.5e-50 203.0 141 75.2
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 1.5e-50 203.0 140 74.3
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 1.9e-50 202.6 140 80.7
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 1.9e-50 202.6 141 75.9
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.9e-50 202.6 140 75.7
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 1.9e-50 202.6 140 75.7
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 3.3e-50 201.8 141 74.5
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.3e-50 201.8 140 74.3
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 5.7e-50 201.1 141 75.2
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 5.7e-50 201.1 139 72.7
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 5.7e-50 201.1 140 76.4
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 5.7e-50 201.1 140 76.4
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 7.4e-50 200.7 140 75.7
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 9.7e-50 200.3 139 77.0
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 9.7e-50 200.3 139 73.4
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 1.3e-49 199.9 141 73.8
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.6e-49 199.5 138 75.4
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 1.6e-49 199.5 141 75.9
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 2.2e-49 199.1 141 73.0
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 3.7e-49 198.4 141 73.0
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 3.7e-49 198.4 141 73.0
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 3.7e-49 198.4 139 74.1
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 6.3e-49 197.6 141 72.3
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 8.2e-49 197.2 140 73.6
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 8.2e-49 197.2 142 71.8
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 1.4e-48 196.4 142 71.8
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 1.4e-48 196.4 142 71.8
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.4e-48 196.4 140 72.9
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.4e-48 196.4 140 72.9
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 1.4e-48 196.4 141 75.2
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 1.8e-48 196.1 141 73.0
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.8e-48 196.1 141 74.5
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 1.8e-48 196.1 136 75.0
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 2.4e-48 195.7 140 75.0
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 2.4e-48 195.7 141 71.6
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 2.4e-48 195.7 141 71.6
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 2.4e-48 195.7 141 71.6
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 4.1e-48 194.9 142 70.4
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 5.3e-48 194.5 142 75.4
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 5.3e-48 194.5 141 70.9
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 5.3e-48 194.5 142 76.1
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 5.3e-48 194.5 135 77.0
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 6.9e-48 194.1 141 70.2
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 6.9e-48 194.1 139 71.9
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 6.9e-48 194.1 139 71.9
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 6.9e-48 194.1 139 71.9
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 6.9e-48 194.1 139 71.9
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 6.9e-48 194.1 139 71.9
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 9.0e-48 193.7 141 70.2
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 9.0e-48 193.7 138 76.8
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 1.5e-47 193.0 142 71.1
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 1.5e-47 193.0 142 71.1
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 2.0e-47 192.6 142 71.1
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.0e-47 192.6 141 73.0
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.0e-47 192.6 141 73.0
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 3.4e-47 191.8 140 72.1
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 4.5e-47 191.4 142 69.7
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 5.9e-47 191.0 141 72.3
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 7.7e-47 190.7 140 71.4
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 7.7e-47 190.7 142 69.7
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.3e-46 189.9 139 72.7
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 2.2e-46 189.1 142 69.7
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.2e-46 189.1 139 73.4
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.9e-46 188.7 139 71.9
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 2.9e-46 188.7 139 71.2
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 5.0e-46 188.0 139 71.9
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 5.0e-46 188.0 142 68.3
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 6.5e-46 187.6 140 72.1
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 8.5e-46 187.2 141 71.6
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 1.1e-45 186.8 140 72.1
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.9e-45 186.0 155 67.1
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 1.9e-45 186.0 140 70.7
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 1.9e-45 186.0 140 70.7
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 1.9e-45 186.0 140 70.7
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 1.9e-45 186.0 134 75.4
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.5e-45 185.7 145 71.0
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 2.5e-45 185.7 142 71.8
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 3.2e-45 185.3 141 72.3
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 5.5e-45 184.5 140 72.1
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 7.2e-45 184.1 138 67.4
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 1.6e-44 183.0 141 72.3
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 2.1e-44 182.6 139 73.4
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 2.7e-44 182.2 133 69.2
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 7.9e-44 180.6 144 68.1
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 1.8e-43 179.5 141 68.1
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 8.8e-43 177.2 139 68.3
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 4.3e-42 174.9 133 68.4
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 7.4e-42 174.1 133 69.2
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.7e-41 172.9 139 64.7
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 4.8e-41 171.4 140 66.4
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.8e-40 169.5 138 67.4
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 6.9e-40 167.5 140 62.1
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 1.5e-39 166.4 139 69.1
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.9e-38 162.2 137 60.6
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 3.8e-38 161.8 109 71.6
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 1.9e-37 159.5 138 62.3
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 2.5e-37 159.1 152 63.8
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 5.5e-37 157.9 138 65.2
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.0e-35 153.7 140 62.9
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 1.5e-34 149.8 117 67.5
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 3.3e-34 148.7 119 66.4
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 5.7e-34 147.9 160 57.5
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 7.4e-34 147.5 123 62.6
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 4.8e-33 144.8 147 56.5
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 5.3e-32 141.4 116 59.5
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 9.1e-32 140.6 140 57.1
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.9e-31 137.9 147 55.1
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.3e-30 136.7 145 54.5
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.9e-30 135.6 115 65.2
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 3.8e-30 135.2 140 60.0
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 8.5e-30 134.0 141 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 1.4e-29 133.3 140 52.9
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.1e-28 127.9 130 56.9
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 1.1e-26 123.6 90 72.2
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 1.7e-25 119.8 89 74.2
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 2.2e-22 109.4 67 76.1
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 2.9e-22 109.0 89 65.2
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 3.2e-21 105.5 88 58.0
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 7.2e-21 104.4 79 75.9
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 1.4e-19 100.1 53 88.7
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 9.7e-18 94.0 138 43.5
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.1e-16 90.5 73 68.5
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 5.9e-15 84.7 73 60.3
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 1.7e-14 83.2 132 46.2


User provided reference genes

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