Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 3.6e-211 738.0 379 100.0
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 6.8e-178 627.5 378 87.8
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 7.0e-175 617.5 379 87.3
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 1.9e-172 609.4 378 85.2
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 5.7e-169 597.8 379 84.7
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 4.9e-160 568.2 378 80.2
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 7.8e-158 560.8 374 79.9
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 1.0e-157 560.5 367 81.2
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 1.7e-157 559.7 374 79.7
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 3.0e-157 558.9 372 79.6
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 3.4e-153 545.4 361 80.6
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 7.5e-153 544.3 378 77.2
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 2.9e-152 542.3 375 76.8
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 2.7e-150 535.8 375 75.2
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.0e-149 533.9 370 75.9
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 8.6e-149 530.8 369 76.4
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 1.9e-148 529.6 373 74.8
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.9e-148 529.6 369 76.4
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 2.5e-148 529.3 364 75.3
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.5e-148 529.3 387 72.4
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 3.3e-148 528.9 355 77.5
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 4.3e-148 528.5 369 75.6
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 5.6e-148 528.1 354 76.8
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 7.3e-148 527.7 372 74.2
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.2e-147 526.9 374 74.6
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 2.1e-147 526.2 382 73.0
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 2.8e-147 525.8 368 74.5
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 8.1e-147 524.2 374 73.3
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.1e-146 523.9 374 74.1
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 2.4e-146 522.7 372 73.9
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 2.4e-146 522.7 358 75.1
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 3.1e-146 522.3 374 73.3
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 3.1e-146 522.3 377 72.7
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 4.0e-146 521.9 373 73.2
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 4.0e-146 521.9 374 73.0
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 6.8e-146 521.2 374 73.8
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 6.8e-146 521.2 352 77.0
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 1.5e-145 520.0 358 74.9
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.6e-145 519.2 375 74.1
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 5.8e-145 518.1 377 72.7
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 7.6e-145 517.7 380 72.4
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.6e-145 517.7 380 72.4
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.6e-145 517.7 380 72.4
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 9.9e-145 517.3 380 72.4
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 9.9e-145 517.3 351 75.8
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 9.9e-145 517.3 358 74.9
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.7e-144 516.5 368 73.1
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 1.7e-144 516.5 375 72.5
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 1.7e-144 516.5 365 73.7
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 1.7e-144 516.5 378 72.5
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 2.2e-144 516.2 382 71.7
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.9e-144 515.8 379 71.5
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 3.8e-144 515.4 356 74.2
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.8e-144 515.4 359 75.2
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 3.8e-144 515.4 365 73.7
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 4.9e-144 515.0 375 72.0
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 4.9e-144 515.0 348 77.3
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 6.4e-144 514.6 372 72.8
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 8.4e-144 514.2 369 74.0
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 8.4e-144 514.2 389 70.2
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 8.4e-144 514.2 359 74.7
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 8.4e-144 514.2 359 74.7
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 1.1e-143 513.8 354 75.1
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 1.1e-143 513.8 354 75.1
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 1.4e-143 513.5 376 72.3
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 1.4e-143 513.5 372 72.6
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.9e-143 513.1 368 72.6
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 2.4e-143 512.7 354 74.9
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 2.4e-143 512.7 354 74.9
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 2.4e-143 512.7 377 71.9
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 3.2e-143 512.3 354 74.9
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 4.1e-143 511.9 362 74.0
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 7.1e-143 511.1 380 71.3
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.2e-142 510.4 359 73.8
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.6e-142 510.0 351 74.9
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.1e-142 509.6 347 74.6
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.1e-142 509.6 380 71.3
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 3.5e-142 508.8 367 73.0
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 4.6e-142 508.4 359 73.5
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.0e-142 508.1 397 69.3
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.0e-141 507.3 348 75.6
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 1.3e-141 506.9 377 71.1
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 3.0e-141 505.8 373 71.6
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 3.0e-141 505.8 377 70.8
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 3.0e-141 505.8 377 70.8
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 3.0e-141 505.8 355 74.6
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 6.6e-141 504.6 353 73.9
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 8.6e-141 504.2 375 70.9
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 2.5e-140 502.7 356 73.6
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 3.3e-140 502.3 405 67.4
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 4.7e-139 498.4 348 73.9
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 6.2e-139 498.0 364 72.0
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 3.1e-138 495.7 313 83.1
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 9.0e-138 494.2 397 67.5
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 1.2e-137 493.8 364 70.6
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 2.0e-137 493.0 377 69.8
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 4.4e-137 491.9 377 70.6
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.1e-135 487.3 403 66.0
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 1.1e-135 487.3 351 71.5
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 9.3e-135 484.2 326 77.9
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 1.6e-134 483.4 323 76.5
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 6.0e-134 481.5 354 71.5
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 6.6e-133 478.0 384 67.7
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 8.7e-133 477.6 360 69.2
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.3e-132 475.7 372 69.4
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.1e-131 473.0 399 65.7
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 1.5e-129 466.8 364 68.1
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 6.0e-126 454.9 370 68.1
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 8.7e-125 451.1 351 65.0
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 8.7e-125 451.1 374 66.0
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 5.6e-124 448.4 352 68.2
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 2.1e-123 446.4 364 65.9
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 1.1e-122 444.1 376 64.4
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 4.5e-121 438.7 274 85.4
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 2.7e-118 429.5 347 63.4
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 6.7e-117 424.9 350 62.3
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 1.1e-116 424.1 288 76.0
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 2.5e-116 422.9 362 65.7
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 5.6e-116 421.8 353 61.5
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-114 416.8 380 61.3
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 2.4e-114 416.4 350 61.4
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 5.3e-114 415.2 350 61.1
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 3.8e-112 409.1 309 71.2
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 6.5e-112 408.3 360 59.7
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 7.1e-111 404.8 328 64.0
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.7e-110 402.9 285 73.3
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 1.8e-106 390.2 364 56.0
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 9.0e-106 387.9 350 57.1
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.0e-101 374.4 365 57.3
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 3.9e-101 372.5 271 70.8
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 7.4e-100 368.2 354 58.8
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.8e-98 363.6 326 58.3
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 5.3e-98 362.1 355 57.7
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.0e-96 357.8 300 60.7
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 3.8e-96 355.9 263 72.2
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 2.5e-95 353.2 266 71.1
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.0e-93 347.8 274 67.9
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.7e-93 345.1 298 64.4
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.7e-91 339.3 373 53.4
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.1e-90 337.8 267 66.7
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 1.3e-88 330.9 342 52.3
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 6.5e-88 328.6 258 68.6
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.0e-84 317.0 196 81.1
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 2.0e-73 280.4 229 70.3
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 5.7e-68 262.3 312 51.3
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 5.0e-64 249.2 254 61.0
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.8e-58 230.7 161 68.3
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 5.6e-55 219.2 326 42.6
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 9.5e-55 218.4 133 78.9
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 1.0e-53 214.9 173 65.9
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 3.0e-48 196.8 115 84.3
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.2e-46 191.4 126 72.2
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 1.6e-46 191.0 99 94.9
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 2.8e-46 190.3 102 87.3
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.9e-42 177.6 377 37.7
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 3.0e-40 170.2 259 37.1
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.7e-35 154.5 99 73.7
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 2.2e-35 154.1 241 41.1
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 1.9e-34 151.0 82 87.8
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 4.1e-34 149.8 110 77.3
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 3.5e-33 146.7 80 88.8
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 4.6e-33 146.4 129 60.5
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 2.3e-32 144.1 88 76.1
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.8e-29 134.4 117 63.2
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.4e-26 124.8 73 82.2
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 5.1e-24 116.3 172 49.4
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 5.8e-20 102.8 75 65.3
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 2.4e-18 97.4 66 80.3
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 4.2e-18 96.7 73 60.3
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 9.3e-18 95.5 96 60.4
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 5.6e-15 86.3 73 61.6
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 3.6e-14 83.6 64 68.8
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 6.2e-14 82.8 78 64.1
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 1.1e-07 62.0 78 50.0


User provided reference genes

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