Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 1.5e-192 676.0 340 100.0
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 1.1e-174 616.7 340 91.2
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 5.3e-174 614.4 336 90.5
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 2.5e-171 605.5 340 89.4
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 2.1e-146 522.7 333 78.1
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 2.4e-142 509.2 329 78.7
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 5.6e-139 498.0 332 76.8
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 3.6e-138 495.4 315 79.0
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 6.1e-138 494.6 332 76.5
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 2.6e-136 489.2 315 78.4
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 2.6e-136 489.2 327 77.1
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 1.4e-134 483.4 332 73.8
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 6.0e-133 478.0 322 75.8
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 1.0e-132 477.2 335 72.2
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 1.2e-125 453.8 338 67.2
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 2.5e-123 446.0 333 68.2
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 1.2e-122 443.7 327 66.1
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 1.2e-122 443.7 330 67.0
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 4.7e-122 441.8 329 67.8
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 6.8e-121 438.0 336 65.8
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.2e-120 437.2 335 65.7
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 2.0e-120 436.4 328 65.9
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 2.6e-120 436.0 332 64.5
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 2.6e-120 436.0 332 64.2
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 4.4e-120 435.3 341 65.4
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 4.4e-120 435.3 341 65.4
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 4.4e-120 435.3 332 63.9
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 5.8e-120 434.9 321 66.0
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 9.9e-120 434.1 332 65.1
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.3e-119 433.7 340 64.4
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 1.7e-119 433.3 328 65.9
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 2.2e-119 433.0 335 65.1
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 2.9e-119 432.6 337 64.7
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 4.9e-119 431.8 333 65.8
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 8.3e-119 431.0 337 64.7
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 1.4e-118 430.3 340 64.7
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 1.4e-118 430.3 329 66.6
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 2.4e-118 429.5 337 64.4
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 3.2e-118 429.1 332 66.3
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 4.1e-118 428.7 332 65.4
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 7.1e-118 427.9 332 63.0
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 3.5e-117 425.6 328 63.4
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 6.0e-117 424.9 328 65.9
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 1.0e-116 424.1 317 65.3
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 1.3e-116 423.7 332 64.8
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 3.9e-116 422.2 331 62.5
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 3.9e-116 422.2 334 63.2
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 6.6e-116 421.4 329 63.8
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 1.9e-115 419.9 331 65.0
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 1.2e-114 417.2 314 65.6
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 1.6e-114 416.8 321 64.5
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 6.2e-114 414.8 328 63.1
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 8.1e-114 414.5 337 63.2
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 8.1e-114 414.5 328 63.1
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 1.8e-113 413.3 326 62.3
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 3.1e-113 412.5 342 63.2
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 3.1e-113 412.5 329 62.9
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 3.1e-113 412.5 338 63.0
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 3.1e-113 412.5 338 62.4
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 5.2e-113 411.8 339 63.4
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 5.2e-113 411.8 323 65.3
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 8.9e-113 411.0 331 63.1
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 2.0e-112 409.8 333 63.1
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.0e-112 409.8 328 62.8
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 2.6e-112 409.5 339 61.4
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 2.6e-112 409.5 328 63.4
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 4.4e-112 408.7 339 61.9
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 4.4e-112 408.7 339 62.2
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 4.4e-112 408.7 328 62.5
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 4.4e-112 408.7 326 62.6
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 7.6e-112 407.9 328 63.1
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 9.9e-112 407.5 335 62.4
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 1.3e-111 407.1 337 63.5
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 1.3e-111 407.1 342 61.7
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.3e-111 407.1 328 62.5
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 1.7e-111 406.8 341 61.9
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 2.9e-111 406.0 337 61.7
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 2.9e-111 406.0 333 62.5
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 4.9e-111 405.2 330 63.9
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 4.9e-111 405.2 328 62.2
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 1.1e-110 404.1 335 61.8
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 1.1e-110 404.1 332 61.4
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 1.4e-110 403.7 335 61.8
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 3.2e-110 402.5 328 63.4
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 4.2e-110 402.1 327 61.8
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 7.1e-110 401.4 327 61.5
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 2.7e-109 399.4 318 64.2
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 3.5e-109 399.1 335 61.2
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 3.5e-109 399.1 319 61.1
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 6.0e-109 398.3 325 61.5
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 3.0e-108 396.0 327 61.5
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 5.1e-108 395.2 333 62.8
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 5.1e-108 395.2 339 60.2
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 4.3e-107 392.1 332 60.5
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 2.1e-106 389.8 364 56.9
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 3.6e-106 389.0 326 57.7
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 3.6e-106 389.0 326 57.7
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 9.9e-104 380.9 320 59.7
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 2.4e-102 376.3 315 60.3
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 4.2e-102 375.6 316 57.6
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 2.7e-101 372.9 328 57.9
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 1.5e-99 367.1 337 59.6
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 2.5e-99 366.3 333 57.4
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 3.3e-99 365.9 337 57.0
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 3.3e-99 365.9 332 57.5
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 5.3e-97 358.6 258 67.4
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 4.9e-95 352.1 317 55.2
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 7.1e-94 348.2 337 56.1
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 3.5e-93 345.9 283 58.0
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 1.4e-81 307.4 328 50.9
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 5.3e-81 305.4 359 44.3
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 2.2e-79 300.1 324 44.8
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 8.4e-79 298.1 252 59.9
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 2.8e-66 256.5 331 40.2
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 5.5e-62 242.3 251 52.2
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 5.7e-59 232.3 316 41.1
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 7.4e-59 231.9 220 51.8
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 2.9e-55 219.9 182 63.2
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 1.5e-54 217.6 182 62.6
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 1.1e-51 208.0 189 56.6
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 6.3e-50 202.2 286 38.8
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 8.2e-50 201.8 158 63.9
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 9.1e-49 198.4 149 62.4
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 7.0e-41 172.2 135 65.2
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 5.9e-40 169.1 142 60.6
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 2.0e-35 154.1 133 61.7
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 7.5e-35 152.1 127 61.4
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 1.3e-34 151.4 100 72.0
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 1.7e-34 151.0 105 69.5
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 2.2e-34 150.6 113 66.4
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 3.7e-34 149.8 96 74.0
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 8.3e-34 148.7 100 72.0
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 2.7e-32 143.7 128 60.9
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 1.3e-31 141.4 261 31.4
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 3.8e-31 139.8 197 41.1
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 3.8e-31 139.8 125 55.2
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 9.5e-30 135.2 112 59.8
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 6.1e-29 132.5 93 65.6
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 6.1e-29 132.5 168 42.3
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 8.0e-29 132.1 112 58.9
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 1.4e-28 131.3 108 60.2
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 2.9e-26 123.6 92 64.1
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 2.9e-26 123.6 92 64.1
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 8.3e-26 122.1 156 42.9
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 3.5e-24 116.7 171 45.6
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 4.6e-24 116.3 100 58.0
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 9.5e-22 108.6 164 34.1
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.2e-19 101.7 138 44.9
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 3.9e-15 86.7 122 48.4
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 2.9e-10 70.5 100 47.0
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 6.4e-10 69.3 43 76.7
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 3.2e-09 67.0 56 57.1
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 3.5e-08 63.5 49 63.3
CSS0025065 Camellia sinensis var. sinensis HOM05D003335 ORTHO05D003853 2.3e-07 60.8 265 24.9
Phvul.006G027500 Phaseolus vulgaris HOM05D001610 ORTHO05D001585 2.3e-07 60.8 303 19.8
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 3.9e-07 60.1 190 32.1
Glyma.18G114800 Glycine max HOM05D001610 ORTHO05D001585 1.1e-06 58.5 302 18.5
Dinv29806 Davidia involucrata HOM05D003335 ORTHO05D003853 5.6e-06 56.2 265 22.6


User provided reference genes

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