Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 1.6e-66 256.1 151 100.0
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 8.7e-60 233.8 151 92.1
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 1.5e-59 233.0 148 92.6
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 5.3e-57 224.6 158 86.7
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 7.6e-56 220.7 128 88.3
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 9.9e-56 220.3 130 88.5
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.3e-55 219.9 130 88.5
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 2.9e-55 218.8 127 90.6
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 2.9e-55 218.8 151 85.4
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 4.9e-55 218.0 128 89.1
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 4.9e-55 218.0 128 87.5
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 3.5e-53 211.8 120 91.7
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 8.7e-52 207.2 151 83.4
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 1.1e-51 206.8 130 84.6
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.5e-51 206.5 121 90.9
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.3e-51 205.3 121 90.9
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.3e-51 204.9 121 90.1
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 7.4e-51 204.1 130 82.3
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 9.6e-51 203.8 147 81.0
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 1.3e-50 203.4 128 85.2
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 1.3e-50 203.4 125 84.8
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 2.1e-50 202.6 147 80.3
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 2.1e-50 202.6 129 85.3
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 2.1e-50 202.6 129 85.3
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 2.1e-50 202.6 125 86.4
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 4.8e-50 201.4 125 85.6
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 6.2e-50 201.1 147 81.0
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 6.2e-50 201.1 130 83.8
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 6.2e-50 201.1 130 83.8
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 8.1e-50 200.7 130 80.8
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.4e-49 199.9 125 84.8
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.8e-49 199.5 124 85.5
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.8e-49 199.5 124 85.5
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 4.0e-49 198.4 121 86.0
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 4.0e-49 198.4 145 83.4
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 4.0e-49 198.4 130 82.3
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 5.3e-49 198.0 144 87.5
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 6.9e-49 197.6 122 86.1
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 9.0e-49 197.2 122 84.4
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 2.0e-48 196.1 125 82.4
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 2.6e-48 195.7 128 82.8
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 3.4e-48 195.3 144 82.6
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 3.4e-48 195.3 149 82.6
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 4.5e-48 194.9 124 83.1
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 4.5e-48 194.9 124 82.3
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 5.8e-48 194.5 124 83.1
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 5.8e-48 194.5 127 79.5
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 7.6e-48 194.1 149 82.6
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 1.0e-47 193.7 130 78.5
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.3e-47 193.4 150 81.3
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 2.2e-47 192.6 126 80.2
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 2.2e-47 192.6 120 84.2
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 2.9e-47 192.2 152 78.3
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 4.9e-47 191.4 144 82.6
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 4.9e-47 191.4 123 83.7
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 6.5e-47 191.0 130 77.7
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 6.5e-47 191.0 154 76.0
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 6.5e-47 191.0 124 80.6
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 1.4e-46 189.9 125 79.2
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 1.9e-46 189.5 158 70.3
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 4.2e-46 188.3 150 76.7
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 5.5e-46 188.0 124 79.0
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 5.5e-46 188.0 124 79.0
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 7.1e-46 187.6 126 77.8
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 7.1e-46 187.6 124 79.0
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 9.3e-46 187.2 127 76.4
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 9.3e-46 187.2 143 80.4
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 9.3e-46 187.2 122 79.5
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 1.6e-45 186.4 129 78.3
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 2.7e-45 185.7 124 77.4
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 6.0e-45 184.5 150 72.7
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 1.0e-44 183.7 122 78.7
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 1.0e-44 183.7 124 77.4
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.3e-44 183.3 123 76.4
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 1.3e-44 183.3 122 77.9
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 1.3e-44 183.3 124 76.6
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 1.8e-44 183.0 122 78.7
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 3.0e-44 182.2 150 72.0
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 3.9e-44 181.8 124 79.8
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 5.1e-44 181.4 126 74.6
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 6.7e-44 181.0 150 70.0
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 8.7e-44 180.6 122 75.4
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 8.7e-44 180.6 120 77.5
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.5e-43 179.9 122 74.6
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 2.5e-43 179.1 122 75.4
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 2.5e-43 179.1 122 75.4
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 2.5e-43 179.1 122 75.4
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 2.5e-43 179.1 122 75.4
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 2.5e-43 179.1 127 72.4
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 3.3e-43 178.7 122 76.2
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 3.3e-43 178.7 123 74.0
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 5.7e-43 177.9 122 74.6
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 7.4e-43 177.6 125 74.4
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 1.3e-42 176.8 130 71.5
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.6e-42 176.4 122 74.6
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 2.8e-42 175.6 126 73.8
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 3.7e-42 175.3 124 78.2
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 4.8e-42 174.9 127 73.2
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 4.8e-42 174.9 127 73.2
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 1.8e-41 172.9 131 71.0
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.4e-41 172.6 127 72.4
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.4e-41 172.6 127 72.4
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 2.4e-41 172.6 116 77.6
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 6.9e-41 171.0 127 71.7
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 6.9e-41 171.0 119 71.4
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 5.9e-40 167.9 124 75.0
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 1.0e-39 167.2 122 73.0
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 1.0e-39 167.2 148 64.2
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.4e-38 163.3 96 88.5
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 1.9e-38 162.9 195 52.8
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 2.5e-38 162.5 205 50.2
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 3.2e-38 162.2 129 72.9
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 7.2e-38 161.0 123 67.5
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 9.3e-38 160.6 129 68.2
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 6.1e-37 157.9 128 64.8
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.3e-36 156.8 144 65.3
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 8.7e-36 154.1 137 68.6
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 7.4e-35 151.0 98 82.7
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.3e-34 150.2 102 76.5
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 2.2e-34 149.4 101 77.2
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 2.2e-34 149.4 100 80.0
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 1.8e-33 146.4 123 63.4
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 6.9e-33 144.4 120 61.7
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 2.9e-31 139.0 119 59.7
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 1.4e-30 136.7 91 80.2
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 2.5e-30 136.0 125 55.2
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 2.1e-29 132.9 123 56.1
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.4e-28 130.2 83 80.7
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 8.8e-28 127.5 122 54.1
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 1.7e-26 123.2 121 52.9
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.7e-23 113.2 107 64.5
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 3.8e-23 112.1 93 62.4
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 3.8e-23 112.1 93 62.4
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 3.8e-23 112.1 81 72.8
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.5e-19 100.1 95 64.2
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 2.6e-16 89.4 65 70.8
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 9.4e-14 80.9 51 72.5
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 2.8e-10 69.3 70 61.4
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 6.3e-10 68.2 83 54.2
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 6.3e-10 68.2 83 54.2
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 1.1e-06 57.4 47 61.7


User provided reference genes

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