Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 5.1e-218 760.8 375 100.0
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 4.7e-171 604.7 375 77.3
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 2.6e-169 599.0 374 77.8
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 2.0e-166 589.3 375 76.5
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 8.8e-146 520.8 371 67.1
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 7.0e-143 511.1 369 68.0
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 1.2e-142 510.4 367 66.8
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 1.3e-141 506.9 368 66.6
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 3.5e-126 455.7 362 61.3
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 1.2e-121 440.7 373 59.2
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 3.4e-121 439.1 360 59.7
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 7.5e-121 438.0 374 58.0
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 2.8e-115 419.5 364 58.8
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 1.4e-114 417.2 380 55.5
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 1.9e-108 396.7 380 53.4
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 3.1e-106 389.4 372 53.5
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 4.0e-106 389.0 364 53.8
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 2.2e-104 383.3 366 52.2
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 2.4e-103 379.8 368 52.4
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 2.1e-102 376.7 361 53.7
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 8.7e-101 371.3 370 50.3
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 8.7e-101 371.3 368 53.8
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.5e-100 370.5 372 53.2
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 2.5e-100 369.8 368 53.5
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 2.1e-99 366.7 365 51.5
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 2.1e-99 366.7 362 53.3
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 4.8e-99 365.5 376 52.4
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 1.1e-98 364.4 375 51.2
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 2.0e-97 360.1 371 51.5
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 3.4e-97 359.4 252 68.3
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 2.2e-96 356.7 364 51.4
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.9e-96 356.3 364 51.9
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 2.9e-96 356.3 370 48.4
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 3.8e-96 355.9 367 50.4
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 3.8e-96 355.9 374 48.4
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 6.4e-96 355.1 366 48.1
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 8.4e-96 354.8 377 49.1
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 9.3e-95 351.3 367 47.4
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.1e-94 350.1 369 48.2
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 2.1e-94 350.1 371 47.2
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 3.5e-94 349.4 366 50.3
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.3e-93 347.4 377 47.2
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 1.7e-93 347.1 371 47.7
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.1e-92 344.4 377 46.9
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 1.5e-92 344.0 371 45.6
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 3.3e-92 342.8 371 47.2
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 4.3e-92 342.4 347 49.3
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 4.3e-92 342.4 377 50.4
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.3e-91 340.9 369 46.6
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 1.6e-91 340.5 378 48.9
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 2.1e-91 340.1 368 46.7
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 4.0e-90 335.9 368 46.2
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 5.3e-90 335.5 379 45.4
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 9.0e-90 334.7 372 47.0
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 1.5e-89 334.0 377 47.5
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 2.0e-89 333.6 369 47.4
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 7.6e-89 331.6 381 46.2
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 2.2e-88 330.1 379 47.2
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 3.8e-88 329.3 401 44.9
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 4.9e-88 328.9 356 49.2
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 8.4e-88 328.2 372 46.2
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 3.2e-87 326.2 375 45.1
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 3.2e-87 326.2 368 45.7
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 7.1e-87 325.1 370 46.2
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 7.9e-86 321.6 312 50.3
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 1.3e-85 320.9 372 43.8
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.9e-85 319.3 368 45.1
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 5.1e-85 318.9 369 46.9
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 8.7e-85 318.2 381 45.7
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.8e-83 313.2 371 42.6
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 6.2e-83 312.0 403 42.9
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 1.1e-82 311.2 370 48.6
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 1.4e-82 310.8 370 43.2
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 9.0e-82 308.1 366 44.5
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.5e-81 307.4 379 45.1
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 2.0e-81 307.0 371 43.9
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 4.5e-81 305.8 384 45.3
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 1.7e-80 303.9 370 42.4
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 4.9e-80 302.4 367 42.0
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 8.4e-80 301.6 366 42.6
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 1.1e-79 301.2 367 42.5
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 1.4e-79 300.8 368 44.3
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 1.9e-79 300.4 365 46.0
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 3.0e-77 293.1 373 42.9
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 8.7e-77 291.6 362 42.8
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 9.6e-76 288.1 374 39.0
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 6.2e-75 285.4 356 43.0
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 1.1e-74 284.6 369 40.4
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 1.1e-74 284.6 369 40.4
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 1.4e-74 284.3 370 41.6
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 6.9e-74 282.0 368 45.1
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 2.0e-73 280.4 378 41.3
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 3.4e-73 279.6 374 41.7
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 5.8e-73 278.9 374 41.4
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 7.6e-73 278.5 362 41.4
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 1.0e-72 278.1 374 41.4
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 1.3e-72 277.7 375 39.5
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 2.2e-72 276.9 372 41.7
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 2.2e-72 276.9 378 43.4
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 1.4e-71 274.2 374 41.7
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 1.6e-70 270.8 374 41.4
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 3.5e-70 269.6 372 40.9
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 3.5e-70 269.6 369 40.1
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 3.0e-69 266.5 294 44.6
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 5.1e-69 265.8 371 39.1
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 5.1e-69 265.8 162 79.0
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 8.7e-69 265.0 371 40.4
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 1.9e-68 263.8 384 39.8
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 2.5e-68 263.5 265 47.5
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 9.7e-68 261.5 379 38.0
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 6.3e-67 258.8 367 38.7
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.4e-66 257.7 263 47.5
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 3.1e-66 256.5 379 41.4
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 4.1e-66 256.1 258 49.6
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 5.3e-66 255.8 378 39.2
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 1.5e-65 254.2 360 40.6
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 2.6e-65 253.4 361 39.3
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 1.0e-64 251.5 372 39.8
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.2e-64 250.4 240 52.5
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 2.9e-64 250.0 361 38.2
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 5.0e-64 249.2 373 37.5
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 6.5e-64 248.8 357 42.3
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 1.4e-63 247.7 365 36.2
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 2.5e-63 246.9 339 39.5
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 4.2e-63 246.1 376 38.0
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 3.6e-62 243.0 267 43.1
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 3.1e-58 229.9 329 35.3
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 8.5e-56 221.9 270 46.7
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 8.8e-53 211.8 279 41.9
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 1.4e-45 188.0 374 32.4
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 5.7e-44 182.6 215 43.3
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 3.5e-41 173.3 256 36.7
TPR.G18320 Trifolium pratense HOM05D004907 ORTHO05D005707 2.2e-40 170.6 99 81.8
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 2.9e-40 170.2 173 46.8
Medtr5g033860 Medicago truncatula HOM05D004907 ORTHO05D005707 3.6e-38 163.3 97 78.4
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.1e-34 151.8 183 45.9
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 3.5e-33 146.7 207 39.1
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 1.3e-32 144.8 187 45.5
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 7.7e-25 119.0 314 30.3
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 5.6e-23 112.8 339 26.8
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 1.2e-22 111.7 295 30.5
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 4.7e-22 109.8 334 27.5
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 2.0e-20 104.4 343 28.3
vmacro14766 Vaccinium macrocarpon HOM05D007853 ORTHO05D009873 2.6e-20 104.0 350 26.0
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 4.4e-20 103.2 341 28.4
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 7.5e-20 102.4 114 44.7
Actinidia23732 Actinidia chinensis HOM05D007853 ORTHO05D009873 1.3e-19 101.7 346 25.4
SEGI_02257 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 4.9e-19 99.8 381 25.7
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 9.2e-18 95.5 340 26.2
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.2e-17 95.1 82 52.4
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 2.3e-16 90.9 335 23.6
Actinidia09494 Actinidia chinensis HOM05D007853 ORTHO05D009873 2.9e-16 90.5 365 24.4
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 2.9e-16 90.5 345 25.5
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 2.9e-16 90.5 345 25.5
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 1.1e-15 88.6 365 24.1
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.5e-15 88.2 128 39.8
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.5e-15 88.2 92 50.0
TWI18G0437 Tripterygium wilfordii HOM05D007853 ORTHO05D009873 5.6e-15 86.3 338 25.7
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 7.3e-15 85.9 370 24.3
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 7.3e-15 85.9 185 33.0
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 7.3e-15 85.9 347 26.2
GSVIVG01028563001 Vitis vinifera HOM05D007853 ORTHO05D009873 9.5e-15 85.5 316 25.6
Prupe.8G204900 Prunus persica HOM05D007853 ORTHO05D009873 1.2e-14 85.1 346 26.3
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 6.2e-14 82.8 313 25.6
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 8.0e-14 82.4 79 50.6
MD05G1178400 Malus domestica HOM05D007853 ORTHO05D009873 4.0e-13 80.1 355 25.1
CARHR101120 Cardamine hirsuta HOM05D007853 ORTHO05D009873 1.3e-11 75.1 361 25.2


User provided reference genes

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