Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 2.4e-72 275.4 139 100.0
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 6.5e-62 240.7 140 84.3
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 8.5e-62 240.4 138 84.8
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 8.5e-62 240.4 139 85.6
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 1.1e-61 240.0 139 85.6
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 5.5e-61 237.7 140 82.9
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 9.4e-61 236.9 134 85.8
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 9.4e-61 236.9 139 83.5
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 1.6e-60 236.1 134 84.3
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 6.1e-60 234.2 134 84.3
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 8.0e-60 233.8 139 82.7
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 1.0e-59 233.4 133 85.7
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 1.0e-59 233.4 137 83.2
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 1.8e-59 232.6 133 85.0
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 2.6e-58 228.8 138 81.9
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 4.4e-58 228.0 134 82.1
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 1.3e-57 226.5 139 81.3
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 1.3e-57 226.5 139 81.3
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 2.8e-57 225.3 138 77.5
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 1.8e-56 222.6 139 79.9
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 2.4e-56 222.2 137 79.6
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 3.1e-56 221.9 138 79.7
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 3.1e-56 221.9 137 81.0
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 4.1e-56 221.5 139 76.3
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 7.0e-56 220.7 137 75.9
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 9.1e-56 220.3 137 78.1
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 9.1e-56 220.3 139 79.1
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 9.1e-56 220.3 139 79.1
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 9.1e-56 220.3 137 78.1
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 1.6e-55 219.5 138 78.3
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 1.6e-55 219.5 137 79.6
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 4.5e-55 218.0 139 77.7
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 5.9e-55 217.6 137 78.8
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 7.7e-55 217.2 135 79.3
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 7.7e-55 217.2 137 79.6
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 7.7e-55 217.2 138 76.8
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 1.0e-54 216.9 137 78.1
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 1.7e-54 216.1 137 78.1
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 1.7e-54 216.1 137 78.1
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.7e-54 216.1 138 76.8
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 3.8e-54 214.9 137 77.4
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 5.0e-54 214.5 139 77.0
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 5.0e-54 214.5 138 79.0
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 5.0e-54 214.5 137 77.4
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 6.6e-54 214.2 138 73.9
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 6.6e-54 214.2 139 75.5
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 8.6e-54 213.8 136 78.7
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 1.1e-53 213.4 137 75.2
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 1.1e-53 213.4 139 74.8
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 1.1e-53 213.4 119 89.9
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 1.5e-53 213.0 138 79.0
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 3.3e-53 211.8 137 76.6
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 4.3e-53 211.5 137 75.9
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 5.6e-53 211.1 139 77.0
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 1.6e-52 209.5 137 75.2
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 1.6e-52 209.5 137 75.9
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 2.1e-52 209.1 138 75.4
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 2.1e-52 209.1 138 76.8
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 2.8e-52 208.8 138 76.1
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 2.8e-52 208.8 137 73.7
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 3.6e-52 208.4 137 78.1
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 3.6e-52 208.4 137 73.0
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 4.7e-52 208.0 139 73.4
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 6.1e-52 207.6 138 76.8
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 6.1e-52 207.6 138 75.4
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 6.1e-52 207.6 138 74.6
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 6.1e-52 207.6 138 74.6
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 1.0e-51 206.8 137 73.7
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 3.0e-51 205.3 137 75.2
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 5.2e-51 204.5 138 74.6
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 6.8e-51 204.1 131 77.1
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 1.2e-50 203.4 137 73.7
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 1.5e-50 203.0 137 72.3
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 7.5e-50 200.7 148 72.3
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 9.8e-50 200.3 138 71.0
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 2.2e-49 199.1 137 73.7
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 2.9e-49 198.7 137 73.7
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 2.9e-49 198.7 137 73.7
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 2.9e-49 198.7 137 70.1
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 6.4e-49 197.6 146 69.2
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 6.4e-49 197.6 146 69.2
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 6.4e-49 197.6 146 69.2
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 6.4e-49 197.6 146 69.2
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 1.8e-48 196.1 138 72.5
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 1.8e-48 196.1 140 72.1
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 2.4e-48 195.7 139 70.5
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 3.2e-48 195.3 138 72.5
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 4.1e-48 194.9 137 66.4
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 5.4e-48 194.5 137 71.5
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 2.0e-47 192.6 137 65.7
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 2.0e-47 192.6 137 70.1
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 2.7e-47 192.2 137 71.5
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 3.5e-47 191.8 137 72.3
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 4.6e-47 191.4 144 68.8
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 7.8e-47 190.7 143 68.5
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 1.0e-46 190.3 137 69.3
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 2.3e-46 189.1 136 69.1
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 7.3e-45 184.1 119 72.3
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 2.1e-44 182.6 114 74.6
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 6.2e-44 181.0 136 67.6
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 6.2e-44 181.0 136 67.6
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 1.4e-43 179.9 115 73.9
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 1.8e-43 179.5 114 74.6
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 2.3e-43 179.1 120 70.0
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 5.2e-43 177.9 115 73.0
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 6.8e-43 177.6 114 72.8
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 6.8e-43 177.6 118 70.3
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 6.8e-43 177.6 115 73.0
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 8.9e-43 177.2 115 72.2
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 1.2e-42 176.8 114 72.8
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 1.2e-42 176.8 100 81.0
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 2.6e-42 175.6 110 74.5
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 2.6e-42 175.6 110 74.5
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 2.6e-42 175.6 110 74.5
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 7.5e-42 174.1 110 73.6
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 7.5e-42 174.1 110 73.6
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 2.2e-41 172.6 125 67.2
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 3.7e-41 171.8 110 73.6
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 1.6e-39 166.4 114 76.3
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 1.3e-38 163.3 134 64.2
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 3.0e-38 162.2 118 75.4
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 1.1e-35 153.7 93 69.9
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 1.8e-35 152.9 135 57.0
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 6.4e-33 144.4 137 56.2
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 4.1e-32 141.7 84 77.4
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 3.0e-30 135.6 128 58.6
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 3.6e-28 128.6 125 52.0
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 8.1e-28 127.5 110 59.1
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 8.1e-28 127.5 122 56.6
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 1.3e-25 120.2 136 52.9
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 2.9e-25 119.0 73 82.2
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 4.9e-25 118.2 72 68.1
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 4.1e-24 115.2 60 78.3
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 1.7e-22 109.8 82 74.4
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 4.3e-21 105.1 75 76.0
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 1.1e-19 100.5 100 52.0
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 5.2e-19 98.2 59 72.9
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 6.8e-19 97.8 120 43.3
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 1.5e-18 96.7 70 65.7
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 5.8e-18 94.7 76 61.8
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 7.6e-18 94.4 93 59.1
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 2.3e-14 82.8 59 64.4
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 8.7e-14 80.9 56 71.4
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 1.9e-13 79.7 80 50.0
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 6.2e-12 74.7 141 38.3
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 3.1e-11 72.4 132 37.1
MELO3C033488.2 Cucumis melo HOM05D005190 ORTHO05D006183 6.9e-11 71.2 79 54.4
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 1.3e-09 67.0 81 46.9


User provided reference genes

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