Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 5.7e-198 694.1 366 100.0
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 4.6e-163 578.2 368 86.1
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 1.7e-162 576.2 367 84.7
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 2.5e-153 545.8 371 79.5
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 4.7e-152 541.6 371 79.0
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 3.3e-145 518.8 371 76.3
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 1.6e-144 516.5 371 76.8
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 2.6e-142 509.2 373 73.7
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 9.6e-137 490.7 375 72.8
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 6.4e-133 478.0 328 77.4
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 3.3e-129 465.7 384 68.0
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 1.1e-127 460.7 378 67.2
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 9.0e-127 457.6 378 66.7
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 1.5e-126 456.8 378 67.7
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 1.3e-125 453.8 374 67.1
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 1.7e-125 453.4 372 66.1
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 3.8e-125 452.2 372 65.9
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 4.9e-125 451.8 372 66.1
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 8.4e-125 451.1 394 66.8
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 8.4e-125 451.1 389 64.5
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 3.2e-124 449.1 365 68.2
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 5.4e-124 448.4 369 66.7
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 7.1e-124 448.0 379 67.8
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 7.1e-124 448.0 380 66.6
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 2.1e-123 446.4 372 66.1
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 5.1e-122 441.8 387 65.1
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 9.6e-121 437.6 332 71.7
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 8.1e-120 434.5 387 63.0
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 1.1e-119 434.1 302 79.8
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 1.1e-119 434.1 386 65.0
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 1.4e-119 433.7 385 64.4
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 3.1e-119 432.6 323 73.1
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 1.5e-118 430.3 269 82.9
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.5e-118 430.3 372 65.1
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 7.6e-118 427.9 369 66.1
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 7.6e-118 427.9 372 65.1
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 9.9e-118 427.6 371 64.7
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 9.9e-118 427.6 371 64.7
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 1.7e-117 426.8 378 63.0
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 3.8e-117 425.6 421 59.9
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 4.9e-117 425.2 367 64.9
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 8.4e-117 424.5 384 63.0
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 8.4e-117 424.5 385 62.6
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 1.4e-116 423.7 288 78.8
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 1.9e-116 423.3 388 62.6
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 3.2e-116 422.5 376 63.0
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 9.3e-116 421.0 339 68.4
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 9.3e-116 421.0 336 67.3
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 9.3e-116 421.0 301 74.8
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 1.2e-115 420.6 377 64.7
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 1.2e-115 420.6 300 74.0
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 2.1e-115 419.9 302 73.5
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 2.7e-115 419.5 376 65.4
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 4.6e-115 418.7 328 68.6
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 6.0e-115 418.3 346 67.9
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 7.9e-115 417.9 300 73.7
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 7.9e-115 417.9 289 77.2
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 1.3e-114 417.2 302 74.2
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 1.8e-114 416.8 301 74.1
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 2.3e-114 416.4 272 78.7
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 2.3e-114 416.4 272 78.7
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 2.3e-114 416.4 406 59.9
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 2.3e-114 416.4 376 64.9
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 3.0e-114 416.0 330 69.4
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 3.0e-114 416.0 370 64.9
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 6.7e-114 414.8 268 80.6
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 8.7e-114 414.5 301 73.4
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 1.1e-113 414.1 328 70.4
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.1e-113 414.1 259 81.9
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 2.5e-113 412.9 412 58.7
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 3.3e-113 412.5 272 79.4
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 3.3e-113 412.5 279 76.3
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 7.4e-113 411.4 377 64.2
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 4.8e-112 408.7 385 62.1
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 1.4e-111 407.1 374 62.8
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 1.8e-111 406.8 518 51.0
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 4.0e-111 405.6 372 62.6
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 5.3e-111 405.2 285 73.7
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 1.2e-110 404.1 523 50.1
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 2.6e-110 402.9 281 76.5
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 2.7e-107 392.9 247 81.4
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 2.7e-107 392.9 313 67.4
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 1.9e-105 386.7 387 58.9
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 5.7e-105 385.2 386 59.3
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 3.7e-104 382.5 277 71.8
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 3.7e-104 382.5 274 71.2
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 8.2e-104 381.3 315 67.3
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 8.2e-104 381.3 346 63.9
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 1.1e-103 380.9 277 71.5
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 1.5e-102 377.1 323 64.7
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 1.0e-101 374.4 300 67.0
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 3.8e-101 372.5 302 65.6
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 2.1e-99 366.7 266 73.3
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 1.0e-98 364.4 277 69.3
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 8.7e-98 361.3 305 66.2
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 2.4e-95 353.2 268 69.8
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 1.7e-93 347.1 424 51.7
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 1.9e-92 343.6 367 56.4
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 7.2e-92 341.7 398 53.0
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 2.7e-91 339.7 352 57.7
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 6.7e-90 335.1 354 57.3
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 1.5e-89 334.0 282 63.1
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 2.0e-86 323.6 294 61.9
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 2.6e-86 323.2 261 66.7
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 6.5e-85 318.5 209 78.9
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 1.4e-79 300.8 292 61.6
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 9.1e-79 298.1 274 56.9
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 3.8e-77 292.7 263 57.8
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 2.5e-76 290.0 390 50.5
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 1.2e-73 281.2 178 82.6
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 2.8e-72 276.6 419 46.1
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 8.5e-69 265.0 275 54.2
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 9.4e-68 261.5 275 53.5
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 5.2e-66 255.8 187 70.1
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 4.5e-62 242.7 157 79.0
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.3e-61 241.1 274 48.9
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 2.5e-60 236.9 257 54.1
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 4.3e-52 209.5 129 81.4
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 1.6e-51 207.6 130 81.5
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 2.4e-47 193.7 134 74.6
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 7.0e-47 192.2 114 86.8
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 3.5e-38 163.3 105 76.2
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.7e-37 161.0 251 37.1
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 1.2e-25 121.7 176 42.6
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-24 117.1 187 36.9
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 2.4e-23 114.0 82 76.8
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 1.3e-21 108.2 83 71.1
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 3.3e-12 77.0 93 52.7
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 2.4e-10 70.9 37 91.9
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 7.6e-09 65.9 149 36.9
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 2.2e-08 64.3 36 86.1
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 1.1e-07 62.0 251 24.7
CBR_g41620 Chara braunii HOM05D005749 ORTHO05D007208 2.1e-06 57.8 55 52.7


User provided reference genes

Program Settings