Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 2.2e-67 258.8 134 100.0
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 2.8e-62 241.9 133 93.2
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 5.0e-59 231.1 129 93.8
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 5.2e-56 221.1 129 88.4
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 3.4e-55 218.4 130 87.7
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 2.3e-48 195.7 129 78.3
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 5.2e-48 194.5 133 77.4
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 5.7e-47 191.0 131 74.8
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 1.3e-46 189.9 131 74.0
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 2.8e-46 188.7 122 80.3
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 4.1e-45 184.9 118 83.1
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 8.6e-43 177.2 128 73.4
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 2.5e-42 175.6 124 75.0
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 5.6e-42 174.5 129 69.8
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 3.6e-41 171.8 129 68.2
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 4.7e-41 171.4 129 68.2
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 8.0e-41 170.6 129 69.0
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 1.0e-40 170.2 129 67.4
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.4e-40 169.9 129 69.8
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.3e-40 169.1 129 69.0
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 3.0e-40 168.7 129 67.4
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 3.0e-40 168.7 129 67.4
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 5.2e-40 167.9 130 68.5
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 5.2e-40 167.9 129 68.2
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 5.2e-40 167.9 129 70.5
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 8.9e-40 167.2 118 72.9
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 2.0e-39 166.0 131 67.2
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 3.4e-39 165.2 129 66.7
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 4.4e-39 164.9 115 76.5
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 7.5e-39 164.1 122 71.3
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 1.7e-38 162.9 142 63.4
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 2.2e-38 162.5 114 75.4
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 2.9e-38 162.2 122 68.0
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.9e-38 162.2 121 68.6
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 3.7e-38 161.8 120 68.3
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 3.7e-38 161.8 115 70.4
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 3.7e-38 161.8 115 70.4
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 6.4e-38 161.0 129 66.7
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 8.3e-38 160.6 129 65.9
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 8.3e-38 160.6 129 67.4
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 1.1e-37 160.2 120 65.8
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 1.8e-37 159.5 122 68.9
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 4.1e-37 158.3 120 65.8
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 5.4e-37 157.9 123 65.0
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 5.4e-37 157.9 116 71.6
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 7.0e-37 157.5 123 65.0
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.2e-36 156.8 129 65.9
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 1.2e-36 156.8 121 66.9
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 1.6e-36 156.4 128 65.6
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 7.8e-36 154.1 131 64.1
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 7.8e-36 154.1 114 69.3
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 7.8e-36 154.1 125 66.4
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 1.0e-35 153.7 111 70.3
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 1.7e-35 152.9 125 62.4
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 2.3e-35 152.5 122 63.9
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.9e-35 152.1 129 64.3
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 2.9e-35 152.1 124 63.7
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 2.9e-35 152.1 119 67.2
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 5.0e-35 151.4 144 58.3
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 6.6e-35 151.0 119 66.4
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 6.6e-35 151.0 119 66.4
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 8.6e-35 150.6 129 63.6
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 4.3e-34 148.3 131 62.6
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 4.3e-34 148.3 129 61.2
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 4.3e-34 148.3 125 62.4
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 5.6e-34 147.9 129 64.3
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 7.3e-34 147.5 115 67.0
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 7.3e-34 147.5 129 61.2
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 7.3e-34 147.5 106 72.6
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 7.3e-34 147.5 129 62.8
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 2.1e-33 146.0 122 60.7
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 2.1e-33 146.0 128 62.5
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 2.8e-33 145.6 117 65.0
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.6e-33 145.2 129 62.0
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 4.7e-33 144.8 111 69.4
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 8.0e-33 144.1 114 64.9
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 8.0e-33 144.1 115 67.8
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 8.0e-33 144.1 129 59.7
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 1.4e-32 143.3 129 61.2
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 1.8e-32 142.9 108 68.5
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 4.0e-32 141.7 114 64.9
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 4.0e-32 141.7 114 64.9
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 4.0e-32 141.7 114 64.9
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 4.0e-32 141.7 114 64.9
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 4.0e-32 141.7 114 64.9
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 4.0e-32 141.7 128 60.2
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 5.2e-32 141.4 116 62.1
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 5.2e-32 141.4 114 64.0
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 6.8e-32 141.0 115 67.8
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 6.8e-32 141.0 106 67.0
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 1.2e-31 140.2 128 62.5
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.5e-31 139.8 117 64.1
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 2.0e-31 139.4 131 62.6
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 2.0e-31 139.4 113 61.9
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 2.0e-31 139.4 107 65.4
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 3.4e-31 138.7 113 64.6
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 4.4e-31 138.3 124 62.1
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 5.8e-31 137.9 111 64.9
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 3.7e-30 135.2 117 63.2
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 6.4e-30 134.4 129 54.3
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 1.9e-29 132.9 131 60.3
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 1.9e-29 132.9 107 67.3
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 4.1e-29 131.7 146 50.7
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.0e-28 129.4 129 58.9
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 2.3e-27 125.9 96 65.6
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.9e-26 122.9 121 59.5
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 3.6e-25 118.6 73 82.2
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 6.2e-25 117.9 101 62.4
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 1.1e-24 117.1 115 53.9
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 4.0e-24 115.2 88 63.6
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.2e-23 113.6 173 44.5
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 1.3e-22 110.2 106 52.8
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 4.9e-22 108.2 149 47.7
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 6.4e-22 107.8 105 51.4
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 2.4e-21 105.9 109 58.7
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 3.2e-21 105.5 162 42.6
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.1e-20 102.8 80 66.2
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 7.8e-20 100.9 122 46.7
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.0e-19 100.5 85 57.6
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 8.6e-19 97.4 114 44.7
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 4.7e-17 91.7 91 56.0
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.0e-15 86.3 70 64.3
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 2.4e-13 79.3 129 38.0
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 6.0e-12 74.7 48 75.0
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 2.3e-11 72.8 90 52.2
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 3.9e-11 72.0 90 52.2
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 3.3e-10 68.9 66 56.1
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 5.6e-10 68.2 62 56.5
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 5.6e-10 68.2 118 36.4
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.2e-09 67.0 60 63.3
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 2.1e-09 66.2 47 61.7
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.1e-09 66.2 66 54.5
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 2.1e-09 66.2 47 70.2
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 1.1e-08 63.9 44 72.7
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 2.4e-08 62.8 122 36.1
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 2.4e-08 62.8 47 63.8
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 8.9e-08 60.8 86 40.7
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 5.8e-07 58.2 40 67.5
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 7.6e-07 57.8 80 47.5
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 6.4e-06 54.7 48 64.6


User provided reference genes

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