Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 6.7e-150 535.0 551 100.0
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 4.9e-84 316.2 562 67.1
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 5.9e-82 309.3 485 87.4
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 2.6e-77 293.9 553 77.6
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 2.0e-66 257.7 251 70.5
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 8.3e-60 235.7 251 64.5
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 3.0e-57 227.3 247 70.0
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 4.3e-56 223.4 154 70.1
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 9.5e-56 222.2 245 70.6
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 7.8e-50 202.6 154 68.2
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 3.9e-49 200.3 244 64.8
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 7.3e-48 196.1 170 58.8
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 9.3e-43 179.1 174 51.1
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 2.1e-42 177.9 234 64.5
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.3e-41 175.3 146 60.3
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 1.3e-36 158.7 130 62.3
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 2.1e-34 151.4 155 50.3
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 1.0e-33 149.1 126 57.9
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 5.1e-33 146.7 154 47.4
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 5.1e-33 146.7 154 47.4
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 5.1e-33 146.7 176 41.5
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 2.1e-31 141.4 139 46.0
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 2.1e-31 141.4 172 40.7
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 4.8e-31 140.2 162 44.4
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 1.1e-30 139.0 173 41.6
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 1.1e-30 139.0 154 44.2
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 1.4e-30 138.7 145 50.3
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 1.4e-30 138.7 162 43.8
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 2.4e-30 137.9 155 42.6
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 5.3e-30 136.7 137 45.3
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 9.0e-30 136.0 154 44.8
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 2.6e-29 134.4 171 40.4
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 1.3e-28 132.1 154 45.5
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 1.7e-28 131.7 154 45.5
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 2.9e-28 131.0 153 43.8
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 2.4e-27 127.9 164 42.1
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 5.5e-27 126.7 140 43.6
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 9.3e-27 125.9 143 42.7
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.6e-26 125.2 183 38.8
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 2.1e-26 124.8 133 45.9
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 2.7e-26 124.4 248 49.6
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 3.5e-26 124.0 155 40.6
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 7.9e-26 122.9 187 38.0
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 7.9e-26 122.9 194 37.1
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 7.9e-26 122.9 150 41.3
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 7.9e-26 122.9 145 43.4
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 1.3e-25 122.1 126 47.6
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 1.3e-25 122.1 155 41.9
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 1.3e-25 122.1 139 45.3
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 2.3e-25 121.3 164 42.1
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 5.1e-25 120.2 152 40.8
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 8.7e-25 119.4 198 37.9
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 1.9e-24 118.2 170 38.2
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 2.5e-24 117.9 166 40.4
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 5.6e-24 116.7 218 37.2
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 5.6e-24 116.7 120 46.7
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 1.3e-23 115.5 177 37.3
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 1.6e-23 115.2 230 51.7
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.6e-23 115.2 168 39.9
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.6e-23 115.2 168 39.9
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 3.7e-23 114.0 171 37.4
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 4.8e-23 113.6 199 38.2
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 8.2e-23 112.8 181 39.2
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 1.4e-22 112.1 179 38.5
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 3.1e-22 110.9 135 42.2
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 5.3e-22 110.2 233 33.5
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 5.3e-22 110.2 177 39.0
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 5.3e-22 110.2 170 36.5
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 6.9e-22 109.8 230 33.0
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 6.9e-22 109.8 230 33.0
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 6.9e-22 109.8 162 40.1
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 1.2e-21 109.0 142 38.0
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 5.8e-21 106.7 103 46.6
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 7.6e-21 106.3 243 32.9
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 1.7e-20 105.1 170 35.9
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 2.9e-20 104.4 128 43.0
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 6.5e-20 103.2 182 36.8
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 8.4e-20 102.8 135 40.7
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 1.4e-19 102.1 163 39.3
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 1.9e-19 101.7 166 34.3
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 7.1e-19 99.8 129 42.6
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 7.1e-19 99.8 129 42.6
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 9.3e-19 99.4 173 39.9
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 2.1e-18 98.2 166 34.3
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 2.7e-18 97.8 170 34.7
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 2.7e-18 97.8 166 34.3
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 2.7e-18 97.8 173 38.2
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 3.5e-18 97.4 166 34.3
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 4.6e-18 97.1 124 42.7
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 6.0e-18 96.7 148 36.5
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 7.9e-18 96.3 141 37.6
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 7.9e-18 96.3 136 39.0
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 2.3e-17 94.7 146 39.0
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 3.0e-17 94.4 157 36.3
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 6.7e-17 93.2 193 35.2
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 1.9e-16 91.7 201 34.8
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 3.3e-16 90.9 200 35.0
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 1.3e-15 89.0 193 34.7
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 1.3e-15 89.0 193 34.7
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 1.6e-15 88.6 131 38.2
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 6.3e-15 86.7 79 50.6
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 1.1e-14 85.9 117 38.5
Psat7g154760 Pisum sativum HOM05D006080 ORTHO05D007382 1.1e-14 85.9 65 63.1
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 5.3e-14 83.6 68 57.4
Peaxi162Scf01290g00029 Petunia axillaris HOM05D006080 ORTHO05D007382 6.9e-14 83.2 123 39.0
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 7.7e-13 79.7 77 51.9
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 7.7e-13 79.7 77 51.9
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 3.8e-12 77.4 80 48.8
Ca_14668_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 6.5e-12 76.6 72 51.4
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 2.5e-11 74.7 90 42.2
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 3.2e-11 74.3 79 48.1
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 3.2e-11 74.3 72 51.4
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 1.6e-10 72.0 78 47.4
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 1.0e-09 69.3 73 45.2
Os04g0446100 Oryza sativa ssp. japonica HOM05D006080 ORTHO05D007382 1.0e-09 69.3 123 37.4
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 1.4e-09 68.9 87 41.4
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.4e-09 68.9 78 46.2
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 3.0e-09 67.8 81 44.4
SMO203G0052 Selaginella moellendorffii HOM05D005973 ORTHO05D038438 3.3e-08 64.3 131 33.6
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 4.3e-08 63.9 144 27.8
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 5.7e-08 63.5 77 41.6
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 7.4e-08 63.2 131 30.5
SGA_v2.0_scaffold63G21630 Striga asiatica HOM05D005622 ORTHO05D002854 3.7e-07 60.8 132 28.0
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 4.8e-07 60.5 147 28.6
Nitab4.5_0010755g0010 Nicotiana tabacum HOM05D000162 ORTHO05D000090 4.8e-07 60.5 160 27.5
SGA_v2.0_scaffold32G13359 Striga asiatica HOM05D005622 ORTHO05D002854 4.8e-07 60.5 132 27.3
SGA_v2.0_scaffold60G20860 Striga asiatica HOM05D000104 ORTHO05D009920 6.3e-07 60.1 92 33.7
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 8.2e-07 59.7 92 31.5
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 8.2e-07 59.7 144 27.1
Cc04_g04190 Coffea canephora HOM05D006819 ORTHO05D008763 1.1e-06 59.3 135 26.7
Nitab4.5_0007991g0010 Nicotiana tabacum HOM05D000162 ORTHO05D000090 1.1e-06 59.3 156 28.2
Gohir.A05G033900 Gossypium hirsutum HOM05D006080 ORTHO05D007382 1.4e-06 58.9 64 40.6
Solyc06g007300.2 Solanum lycopersicum HOM05D000162 ORTHO05D000090 1.4e-06 58.9 127 28.3
Solyc06g007740.1 Solanum lycopersicum HOM05D000162 ORTHO05D000090 1.4e-06 58.9 127 28.3
AUR62006791 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.8e-06 58.5 142 27.5
Sopen06g002220 Solanum pennellii HOM05D000162 ORTHO05D000090 2.4e-06 58.2 127 27.6
Cc02_g04950 Coffea canephora HOM05D000104 ORTHO05D009920 3.1e-06 57.8 143 25.9
Hma1.2p1_3105F.1_g332750 Hydrangea macrophylla HOM05D006080 ORTHO05D007382 3.1e-06 57.8 126 32.5
Gohir.D05G035300 Gossypium hirsutum HOM05D006080 ORTHO05D007382 5.3e-06 57.0 64 39.1
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 5.3e-06 57.0 131 29.8
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 5.3e-06 57.0 131 29.8
Peaxi162Scf00342g00102 Petunia axillaris HOM05D000162 ORTHO05D000090 5.3e-06 57.0 171 23.4
Psat5g195760 Pisum sativum HOM05D006888 ORTHO05D008371 5.3e-06 57.0 165 24.2
RcHm_v2.0_Chr3g0457031 Rosa chinensis HOM05D006888 ORTHO05D008371 5.3e-06 57.0 65 38.5
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 6.9e-06 56.6 130 30.0
Duzib205G1690 Durio zibethinus HOM05D002453 ORTHO05D002107 6.9e-06 56.6 125 28.8
QL04p034761 Quercus lobata HOM05D000104 ORTHO05D009920 6.9e-06 56.6 176 24.4
Zm00001eb423410 Zea mays HOM05D006080 ORTHO05D007382 6.9e-06 56.6 100 33.0
Nitab4.5_0013850g0010 Nicotiana tabacum HOM05D000162 ORTHO05D000090 9.1e-06 56.2 131 26.0


User provided reference genes

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