Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01979_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 1.3e-123 446.4 222 100.0
Medtr2g035660 Medicago truncatula HOM05D005861 ORTHO05D007151 1.3e-115 419.9 222 93.7
TPR.G26579 Trifolium pratense HOM05D005861 ORTHO05D007151 4.3e-108 394.8 222 86.9
Glyma.15G156500 Glycine max HOM05D005861 ORTHO05D007151 8.4e-104 380.6 222 84.2
Lalb_Chr18g0052021 Lupinus albus HOM05D005861 ORTHO05D007151 4.2e-103 378.3 222 83.3
CiPaw.09G138900 Carya illinoinensis HOM05D005861 ORTHO05D007151 6.1e-102 374.4 222 82.0
Potri.003G155100 Populus trichocarpa HOM05D005861 ORTHO05D007151 7.9e-102 374.0 222 82.0
Glyma.09G049800 Glycine max HOM05D005861 ORTHO05D007151 1.0e-101 373.6 222 82.4
GSVIVG01012161001 Vitis vinifera HOM05D005861 ORTHO05D007151 1.0e-101 373.6 222 82.9
Lj6g0026320 Lotus japonicus HOM05D005861 ORTHO05D007151 1.5e-100 369.8 223 80.3
MD10G1226200 Malus domestica HOM05D005861 ORTHO05D007151 2.2e-99 365.9 222 80.6
QL11p011864 Quercus lobata HOM05D005861 ORTHO05D007151 2.2e-99 365.9 221 79.6
QL93p0142_0007 Quercus lobata HOM05D005861 ORTHO05D007151 2.2e-99 365.9 221 79.6
arahy.Tifrunner.gnm1.ann1.MH4CM1 Arachis hypogaea HOM05D005861 ORTHO05D007151 4.8e-99 364.8 222 79.7
CSS0003156 Camellia sinensis var. sinensis HOM05D005861 ORTHO05D007151 8.2e-99 364.0 222 80.2
Prupe.4G119100 Prunus persica HOM05D005861 ORTHO05D007151 8.2e-99 364.0 222 79.3
Cfa001144 Carpinus fangiana HOM05D005861 ORTHO05D007151 1.4e-98 363.2 222 79.3
Peaxi162Scf00036g00158 Petunia axillaris HOM05D005861 ORTHO05D007151 1.4e-98 363.2 222 79.3
Phvul.009G243500 Phaseolus vulgaris HOM05D005861 ORTHO05D007151 2.4e-98 362.5 222 79.7
Sopen02g026550 Solanum pennellii HOM05D005861 ORTHO05D007151 3.1e-98 362.1 222 78.8
Aqoxy3G04101 Aquilegia oxysepala HOM05D005861 ORTHO05D007151 5.3e-98 361.3 222 80.2
FvH4_3g13130 Fragaria vesca HOM05D005861 ORTHO05D007151 1.2e-97 360.1 222 77.5
Solyc02g081920.3 Solanum lycopersicum HOM05D005861 ORTHO05D007151 1.2e-97 360.1 222 78.4
Thecc.09G140900 Theobroma cacao HOM05D005861 ORTHO05D007151 1.2e-97 360.1 222 78.8
Cc09_g01980 Coffea canephora HOM05D005861 ORTHO05D007151 1.5e-97 359.8 222 77.9
VMungo1309G1344 Vigna mungo HOM05D005861 ORTHO05D007151 1.5e-97 359.8 222 78.8
RcHm_v2.0_Chr5g0021381 Rosa chinensis HOM05D005861 ORTHO05D007151 3.4e-97 358.6 222 76.6
Dinv05874 Davidia involucrata HOM05D005861 ORTHO05D007151 4.5e-97 358.2 222 78.8
Ciclev10015087m.g Citrus clementina HOM05D005861 ORTHO05D007151 1.0e-96 357.1 222 77.5
CAN.G809.40 Capsicum annuum HOM05D005861 ORTHO05D007151 1.3e-96 356.7 223 78.5
Nn7g38377 Nelumbo nucifera HOM05D005861 ORTHO05D007151 3.8e-96 355.1 223 78.9
PGSC0003DMG401007333 Solanum tuberosum HOM05D005861 ORTHO05D007151 3.8e-96 355.1 223 78.0
PSO063G0366 Papaver somniferum HOM05D005861 ORTHO05D007151 1.9e-95 352.8 222 76.1
ClCG03G004130 Citrullus lanatus HOM05D005861 ORTHO05D007151 4.2e-95 351.7 222 76.1
Migut.O00467 Erythranthe guttata HOM05D005861 ORTHO05D007151 7.2e-95 350.9 221 76.9
TAR636G0982 Trochodendron aralioides HOM05D005861 ORTHO05D007151 9.4e-95 350.5 223 76.2
Migut.M02023 Erythranthe guttata HOM05D005861 ORTHO05D007151 1.2e-94 350.1 221 76.9
Gorai.009G012700 Gossypium raimondii HOM05D005861 ORTHO05D007151 1.2e-94 350.1 222 76.6
SGA_v2.0_scaffold298G47711 Striga asiatica HOM05D005861 ORTHO05D007151 1.2e-94 350.1 222 73.4
Gohir.D05G012400 Gossypium hirsutum HOM05D005861 ORTHO05D007151 2.7e-94 349.0 222 76.1
Psat1g150560 Pisum sativum HOM05D005861 ORTHO05D007151 2.7e-94 349.0 201 85.6
Manes.03G071200 Manihot esculenta HOM05D005861 ORTHO05D007151 3.6e-94 348.6 222 73.9
TWI38G1305 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 4.6e-94 348.2 223 76.7
Atru.chr10.266 Acer truncatum HOM05D005861 ORTHO05D007151 7.9e-94 347.4 222 76.6
TWI63G1685 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 7.9e-94 347.4 222 76.1
CDE02G4422 Ceratophyllum demersum HOM05D005861 ORTHO05D007151 1.4e-93 346.7 222 77.0
PSO782G3554 Papaver somniferum HOM05D005861 ORTHO05D007151 2.3e-93 345.9 223 75.3
FAN16G2684 Fragaria x ananassa HOM05D005861 ORTHO05D007151 3.0e-93 345.5 250 68.8
MSTRG.18594 Avicennia marina HOM05D005861 ORTHO05D007151 6.7e-93 344.4 221 76.9
FAN21G1611 Fragaria x ananassa HOM05D005861 ORTHO05D007151 1.1e-92 343.6 250 68.4
Gohir.A05G011700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 1.1e-92 343.6 222 76.6
Duzib168G0529 Durio zibethinus HOM05D005861 ORTHO05D007151 2.0e-92 342.8 222 75.2
MELO3C002396.2 Cucumis melo HOM05D005861 ORTHO05D007151 3.3e-92 342.0 225 73.8
Sed0025210 Sechium edule HOM05D005861 ORTHO05D007151 3.3e-92 342.0 222 74.8
CsaV3_1G010060 Cucumis sativus L. HOM05D005861 ORTHO05D007151 4.3e-92 341.7 222 74.3
FAN25G2772 Fragaria x ananassa HOM05D005861 ORTHO05D007151 4.3e-92 341.7 256 67.2
PGR004G1814 Punica granatum HOM05D005861 ORTHO05D007151 1.3e-91 340.1 224 75.0
Sc24g0002940 Simmondsia chinensis HOM05D005861 ORTHO05D007151 4.8e-91 338.2 223 74.0
Eucgr.D00007 Eucalyptus grandis HOM05D005861 ORTHO05D007151 4.1e-90 335.1 224 73.2
Haze_05240 Corylus avellana HOM05D005861 ORTHO05D007151 2.6e-89 332.4 279 63.8
Nitab4.5_0000844g0330 Nicotiana tabacum HOM05D005861 ORTHO05D007151 1.3e-88 330.1 201 77.1
HanXRQChr04g0116561 Helianthus annuus HOM05D005861 ORTHO05D007151 5.0e-88 328.2 221 71.0
THA.LOC104811881 Tarenaya hassleriana HOM05D005861 ORTHO05D007151 8.5e-88 327.4 223 72.2
AT4G20130 Arabidopsis thaliana HOM05D005861 ORTHO05D007151 7.2e-87 324.3 222 70.3
arahy.Tifrunner.gnm1.ann1.RN3XR3 Arachis hypogaea HOM05D005861 ORTHO05D007151 7.2e-87 324.3 222 74.3
AL7G33690 Arabidopsis lyrata HOM05D005861 ORTHO05D007151 1.6e-86 323.2 222 70.7
Carub.0007s2100 Capsella rubella HOM05D005861 ORTHO05D007151 2.7e-86 322.4 222 70.3
CARHR226960 Cardamine hirsuta HOM05D005861 ORTHO05D007151 7.9e-86 320.9 222 70.3
Sp7g18560 Schrenkiella parvula HOM05D005861 ORTHO05D007151 7.9e-86 320.9 222 69.4
HPP92_009503 Vanilla planifolia HOM05D005861 ORTHO05D007151 2.3e-85 319.3 223 69.5
ECA236G3447 Erigeron canadensis HOM05D005861 ORTHO05D007151 3.0e-85 318.9 221 68.3
BcaB03g11658 Brassica carinata HOM05D005861 ORTHO05D007151 1.5e-84 316.6 222 68.9
Aa31LG6G2540 Aethionema arabicum HOM05D005861 ORTHO05D007151 2.0e-84 316.2 222 68.5
Oeu008732.1 Olea europaea HOM05D005861 ORTHO05D007151 3.3e-84 315.5 195 76.9
BcaC01g00656 Brassica carinata HOM05D005861 ORTHO05D007151 4.4e-84 315.1 222 68.5
A08p14640 Brassica napus HOM05D005861 ORTHO05D007151 5.7e-84 314.7 222 68.5
BraA08t33451Z Brassica rapa HOM05D005861 ORTHO05D007151 5.7e-84 314.7 222 68.5
C03p82790 Brassica napus HOM05D005861 ORTHO05D007151 7.4e-84 314.3 222 68.0
BolC3t20561H Brassica oleracea HOM05D005861 ORTHO05D007151 7.4e-84 314.3 222 68.0
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 2.8e-83 312.4 196 77.0
Nitab4.5_0000632g0140 Nicotiana tabacum HOM05D005861 ORTHO05D007151 3.7e-83 312.0 222 70.7
vmacro03562 Vaccinium macrocarpon HOM05D005861 ORTHO05D007151 5.3e-82 308.1 218 68.3
Thhalv10027180m.g Eutrema salsugineum HOM05D005861 ORTHO05D007151 9.4e-79 297.4 222 65.8
Zm00001eb345040 Zea mays HOM05D005861 ORTHO05D007151 2.3e-77 292.7 223 65.0
EL10Ac3g07109 Beta vulgaris HOM05D005861 ORTHO05D007151 1.8e-74 283.1 181 72.4
unitig_37.g12046 Utricularia gibba HOM05D005861 ORTHO05D007151 2.2e-72 276.2 221 61.1
QL93p2001_0005 Quercus lobata HOM05D005861 ORTHO05D007151 1.2e-70 270.4 165 80.6
Mapoly0003s0096 Marchantia polymorpha HOM05D005861 ORTHO05D007151 2.2e-67 259.6 223 57.4
Pp3c8_21700 Physcomitrium patens HOM05D005861 ORTHO05D007151 2.9e-64 249.2 223 53.8
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 8.0e-62 241.1 169 71.0
AagrBONN_evm.TU.Sc2ySwM_344.4889 Anthoceros agrestis HOM05D005861 ORTHO05D007151 6.8e-61 238.0 224 56.2
Cpa.g.sc30.93 Carica papaya HOM05D005861 ORTHO05D007151 2.8e-59 232.6 171 68.4
SMO331G0022 Selaginella moellendorffii HOM05D005861 ORTHO05D007151 1.6e-54 216.9 223 48.4
VMungo0344G0001 Vigna mungo HOM05D005861 ORTHO05D007151 2.3e-53 213.0 149 71.1
VMungo1383G1601 Vigna mungo HOM05D005861 ORTHO05D007151 4.0e-53 212.2 141 72.3
AUR62039890 Chenopodium quinoa HOM05D005861 ORTHO05D007151 1.5e-52 210.3 181 60.8
Gohir.D05G012700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 7.0e-50 201.4 115 79.1
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 9.2e-50 201.1 115 76.5
AUR62040329 Chenopodium quinoa HOM05D005861 ORTHO05D007151 7.8e-49 198.0 181 57.5
CBR_g61479 Chara braunii HOM05D005861 ORTHO05D007151 5.6e-47 191.8 223 43.9
MD05G1244800 Malus domestica HOM05D005861 ORTHO05D007151 1.4e-45 187.2 103 81.6
COL.COLO4_24113 Corchorus olitorius HOM05D005861 ORTHO05D003578 1.3e-43 180.6 189 52.4
Ah.08g212320 Amaranthus hybridus HOM05D005861 ORTHO05D007151 1.7e-43 180.3 197 49.2
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 3.7e-43 179.1 115 69.6
PGSC0003DMG400012780 Solanum tuberosum HOM05D005861 ORTHO05D007151 1.6e-33 147.1 105 73.3
Gorai.N022300 Gossypium raimondii HOM05D005861 ORTHO05D007151 3.4e-28 129.4 222 39.6
A04p29830 Brassica napus HOM05D005861 ORTHO05D007151 3.8e-27 125.9 80 70.0
Hund25553 Selenicereus undatus HOM05D005861 ORTHO05D007151 8.9e-21 104.8 55 83.6
MD05G1244900 Malus domestica HOM05D005861 ORTHO05D007151 4.9e-19 99.0 71 70.4
Ah.11g040820 Amaranthus hybridus HOM05D005861 ORTHO05D007151 6.4e-19 98.6 79 60.8
BraA04t18443Z Brassica rapa HOM05D005861 ORTHO05D007151 6.0e-17 92.0 58 70.7
Ciclev10015103m.g Citrus clementina HOM05D005416 ORTHO05D007956 5.1e-08 62.4 223 24.7
Migut.E00473 Erythranthe guttata HOM05D005416 ORTHO05D007956 5.1e-08 62.4 231 26.4
ECA233G0392 Erigeron canadensis HOM05D005416 ORTHO05D007956 6.7e-08 62.0 232 26.7
Lj1g0026190 Lotus japonicus HOM05D005861 ORTHO05D007151 6.7e-08 62.0 32 84.4
Dinv07734 Davidia involucrata HOM05D005416 ORTHO05D007956 1.9e-07 60.5 240 27.1
HanXRQChr12g0362651 Helianthus annuus HOM05D005416 ORTHO05D007956 2.5e-07 60.1 232 25.4
Nitab4.5_0000922g0060 Nicotiana tabacum HOM05D005416 ORTHO05D007956 3.3e-07 59.7 230 25.2
TAR371G0369 Trochodendron aralioides HOM05D005416 ORTHO05D007956 4.3e-07 59.3 239 24.3
DCAR_030261 Daucus carota HOM05D005416 ORTHO05D007956 5.6e-07 58.9 228 24.1
Nitab4.5_0000198g0220 Nicotiana tabacum HOM05D005416 ORTHO05D007956 5.6e-07 58.9 230 24.3
TAR371G0290 Trochodendron aralioides HOM05D005416 ORTHO05D007956 5.6e-07 58.9 239 24.3
unitig_62.g23745 Utricularia gibba HOM05D005416 ORTHO05D007956 7.4e-07 58.5 230 27.0
PGR102G2697 Punica granatum HOM05D005416 ORTHO05D007956 1.3e-06 57.8 241 25.3
Peaxi162Scf00655g00217 Petunia axillaris HOM05D005416 ORTHO05D007956 1.6e-06 57.4 231 25.5
QL03p035642 Quercus lobata HOM05D005416 ORTHO05D007956 1.6e-06 57.4 228 25.4
CAN.G36.1 Capsicum annuum HOM05D005416 ORTHO05D007956 2.1e-06 57.0 229 24.0
Prupe.1G332800 Prunus persica HOM05D005416 ORTHO05D007956 2.1e-06 57.0 236 23.7
Sopen01g001400 Solanum pennellii HOM05D005416 ORTHO05D007956 2.1e-06 57.0 230 24.3
Zm00001eb190260 Zea mays HOM05D005416 ORTHO05D007956 2.1e-06 57.0 240 25.0
Cre16.g649700 Chlamydomonas reinhardtii HOM05D005861 ORTHO05D007151 2.8e-06 56.6 247 25.5
Lj1g0009858 Lotus japonicus HOM05D005861 ORTHO05D007151 2.8e-06 56.6 66 51.5
HPP92_009635 Vanilla planifolia HOM05D005416 ORTHO05D007956 2.8e-06 56.6 236 26.7
CANSAT01G1131 Cannabis sativa HOM05D005416 ORTHO05D007956 3.6e-06 56.2 242 24.4
MD16G1019300 Malus domestica HOM05D005416 ORTHO05D007956 6.2e-06 55.5 226 23.9
PGSC0003DMG400009729 Solanum tuberosum HOM05D005416 ORTHO05D007956 6.2e-06 55.5 230 24.3


User provided reference genes

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