Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01773_v3 Cicer arietinum L. HOM05D002502 ORTHO05D017711 6.2e-68 260.8 140 100.0
Glyma.11G133600 Glycine max HOM05D002502 ORTHO05D003592 1.6e-28 129.8 110 66.4
Medtr2g078050 Medicago truncatula HOM05D002502 ORTHO05D003592 4.8e-28 128.3 108 69.4
Psat5g297560 Pisum sativum HOM05D002502 ORTHO05D003592 4.8e-28 128.3 108 68.5
Phvul.011G059700 Phaseolus vulgaris HOM05D002502 ORTHO05D003592 6.2e-28 127.9 110 69.1
TPR.G36771 Trifolium pratense HOM05D002502 ORTHO05D017711 1.1e-27 127.1 135 62.2
Ca_04000_v3 Cicer arietinum L. HOM05D002502 ORTHO05D003592 2.4e-27 125.9 110 69.1
Glyma.12G057800 Glycine max HOM05D002502 ORTHO05D003592 3.1e-27 125.6 108 66.7
Medtr8g018150 Medicago truncatula HOM05D002502 ORTHO05D003592 4.0e-27 125.2 108 68.5
VMungo1127G1321 Vigna mungo HOM05D002502 ORTHO05D003592 1.5e-26 123.2 110 66.4
arahy.Tifrunner.gnm1.ann1.P2GJLH Arachis hypogaea HOM05D002502 ORTHO05D003592 3.4e-26 122.1 110 65.5
arahy.Tifrunner.gnm1.ann1.IM6CL8 Arachis hypogaea HOM05D002502 ORTHO05D003592 1.7e-25 119.8 107 65.4
Lj5g0005383 Lotus japonicus HOM05D002502 ORTHO05D017711 2.2e-25 119.4 171 51.5
TPR.G9217 Trifolium pratense HOM05D002502 ORTHO05D003592 1.2e-23 113.6 108 63.0
Gorai.008G128300 Gossypium raimondii HOM05D002502 ORTHO05D003592 2.1e-23 112.8 110 60.9
Psat5g237960 Pisum sativum HOM05D002502 ORTHO05D003592 2.1e-23 112.8 111 62.2
TAR376G0056 Trochodendron aralioides HOM05D002502 ORTHO05D003592 2.1e-23 112.8 111 63.1
Lj8C580T7 Lonicera japonica HOM05D002502 ORTHO05D003592 3.5e-23 112.1 91 65.9
Lj2g0010803 Lotus japonicus HOM05D002502 ORTHO05D003592 3.5e-23 112.1 67 86.6
Lalb_Chr03g0026331 Lupinus albus HOM05D002502 ORTHO05D003592 7.9e-23 110.9 110 62.7
Lj4P468T8 Lonicera japonica HOM05D002502 ORTHO05D003592 1.0e-22 110.5 91 64.8
Lalb_Chr19g0138101 Lupinus albus HOM05D002502 ORTHO05D003592 1.8e-22 109.8 110 60.0
Cpa.g.sc84.61 Carica papaya HOM05D002502 ORTHO05D003592 3.0e-22 109.0 67 80.6
SEGI_13678 Sequoiadendron giganteum HOM05D002502 ORTHO05D003592 3.9e-22 108.6 109 60.6
Lj4g0022659 Lotus japonicus HOM05D002502 ORTHO05D003592 6.7e-22 107.8 67 83.6
Nitab4.5_0000592g0070 Nicotiana tabacum HOM05D002502 ORTHO05D003592 6.7e-22 107.8 114 58.8
Sed0022629 Sechium edule HOM05D002502 ORTHO05D003592 6.7e-22 107.8 113 57.5
CiPaw.13G161500 Carya illinoinensis HOM05D002502 ORTHO05D003592 8.7e-22 107.5 113 59.3
Aqoxy1G00533 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 1.1e-21 107.1 112 60.7
HanXRQChr11g0323631 Helianthus annuus HOM05D002502 ORTHO05D003592 1.1e-21 107.1 121 57.0
Thecc.05G189100 Theobroma cacao HOM05D002502 ORTHO05D003592 1.1e-21 107.1 66 83.3
Ah.09g232260 Amaranthus hybridus HOM05D002502 ORTHO05D003592 1.5e-21 106.7 67 82.1
Manes.14G002300 Manihot esculenta HOM05D002502 ORTHO05D003592 1.5e-21 106.7 67 79.1
Cc11_g14270 Coffea canephora HOM05D002502 ORTHO05D003592 1.9e-21 106.3 94 60.6
Haze_00984 Corylus avellana HOM05D002502 ORTHO05D003592 1.9e-21 106.3 67 79.1
Gohir.A02G105700 Gossypium hirsutum HOM05D002502 ORTHO05D003592 1.9e-21 106.3 67 82.1
Gohir.D03G078100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 1.9e-21 106.3 67 82.1
Gorai.003G086000 Gossypium raimondii HOM05D002502 ORTHO05D003592 1.9e-21 106.3 67 82.1
Medtr2g082240 Medicago truncatula HOM05D002502 ORTHO05D017711 1.9e-21 106.3 149 49.7
Sc09g0008300 Simmondsia chinensis HOM05D002502 ORTHO05D003592 1.9e-21 106.3 67 77.6
Ah.16g104080 Amaranthus hybridus HOM05D002502 ORTHO05D003592 2.5e-21 105.9 67 80.6
Cfa010283 Carpinus fangiana HOM05D002502 ORTHO05D003592 2.5e-21 105.9 67 79.1
MSTRG.7874 Avicennia marina HOM05D002502 ORTHO05D003592 4.3e-21 105.1 113 58.4
BcaC05g24913 Brassica carinata HOM05D002502 ORTHO05D003592 4.3e-21 105.1 106 61.3
CiPaw.06G008400 Carya illinoinensis HOM05D002502 ORTHO05D003592 4.3e-21 105.1 67 77.6
Haze_23131 Corylus avellana HOM05D002502 ORTHO05D003592 4.3e-21 105.1 67 77.6
Carub.0001s0970 Capsella rubella HOM05D002502 ORTHO05D003592 5.6e-21 104.8 111 60.4
Gohir.A12G115100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 5.6e-21 104.8 67 80.6
MBI17_g08352_MAGBIO Magnolia biondii HOM05D002502 ORTHO05D003592 5.6e-21 104.8 67 77.6
Potri.009G054000 Populus trichocarpa HOM05D002502 ORTHO05D003592 5.6e-21 104.8 111 59.5
QL02p019362 Quercus lobata HOM05D002502 ORTHO05D003592 5.6e-21 104.8 66 78.8
QL10p058875 Quercus lobata HOM05D002502 ORTHO05D003592 5.6e-21 104.8 66 78.8
MD16G1277600 Malus domestica HOM05D002502 ORTHO05D003592 7.4e-21 104.4 113 58.4
QL06p021110 Quercus lobata HOM05D002502 ORTHO05D003592 7.4e-21 104.4 66 78.8
Ciclev10006517m.g Citrus clementina HOM05D002502 ORTHO05D003592 9.6e-21 104.0 67 77.6
Duzib170G0594 Durio zibethinus HOM05D002502 ORTHO05D003592 9.6e-21 104.0 66 80.3
Mapoly0056s0118 Marchantia polymorpha HOM05D002502 ORTHO05D003592 9.6e-21 104.0 107 57.9
vmacro19268 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 9.6e-21 104.0 113 59.3
Actinidia08181 Actinidia chinensis HOM05D002502 ORTHO05D003592 1.3e-20 103.6 67 76.1
AT1G10300 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 1.3e-20 103.6 67 76.1
ClCG08G017240 Citrullus lanatus HOM05D002502 ORTHO05D003592 1.3e-20 103.6 112 53.6
HanXRQChr15g0476651 Helianthus annuus HOM05D002502 ORTHO05D003592 1.3e-20 103.6 66 75.8
BcaC05g24904 Brassica carinata HOM05D002502 ORTHO05D003592 1.6e-20 103.2 102 59.8
BolC5t29592H Brassica oleracea HOM05D002502 ORTHO05D003592 1.6e-20 103.2 102 59.8
CAN.G700.14 Capsicum annuum HOM05D002502 ORTHO05D003592 1.6e-20 103.2 113 54.9
Manes.06G164900 Manihot esculenta HOM05D002502 ORTHO05D003592 1.6e-20 103.2 111 55.9
Nn5g27606 Nelumbo nucifera HOM05D002502 ORTHO05D003592 1.6e-20 103.2 66 77.3
Solyc01g081010.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 1.6e-20 103.2 112 54.5
SGA_v2.0_scaffold166G38342 Striga asiatica HOM05D002502 ORTHO05D003592 1.6e-20 103.2 126 53.2
Atru.chr11.1457 Acer truncatum HOM05D002502 ORTHO05D003592 2.1e-20 102.8 67 77.6
Atru.chr11.1490 Acer truncatum HOM05D002502 ORTHO05D003592 2.1e-20 102.8 67 77.6
Atru.chr3.2732 Acer truncatum HOM05D002502 ORTHO05D003592 2.1e-20 102.8 67 77.6
arahy.Tifrunner.gnm1.ann1.VUX1YY Arachis hypogaea HOM05D002502 ORTHO05D003592 2.1e-20 102.8 100 62.0
Dinv30999 Davidia involucrata HOM05D002502 ORTHO05D003592 2.1e-20 102.8 91 62.6
Dinv31104 Davidia involucrata HOM05D002502 ORTHO05D003592 2.1e-20 102.8 91 62.6
Potri.001G258900 Populus trichocarpa HOM05D002502 ORTHO05D003592 2.1e-20 102.8 67 77.6
AL1G21030 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 2.8e-20 102.4 67 74.6
DCAR_007102 Daucus carota HOM05D002502 ORTHO05D003592 3.7e-20 102.1 67 76.1
Oeu025445.1 Olea europaea HOM05D002502 ORTHO05D003592 3.7e-20 102.1 67 76.1
EL10Ac7g16892 Beta vulgaris HOM05D002502 ORTHO05D003592 4.8e-20 101.7 109 57.8
Ciclev10004477m.g Citrus clementina HOM05D002502 ORTHO05D003592 4.8e-20 101.7 66 77.3
Gohir.D12G118600 Gossypium hirsutum HOM05D002502 ORTHO05D003592 4.8e-20 101.7 66 78.8
SalBow2G0269 Salvia bowleyana HOM05D002502 ORTHO05D003592 4.8e-20 101.7 67 77.6
vmacro20354 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 4.8e-20 101.7 111 59.5
CsaV3_2G025380 Cucumis sativus L. HOM05D002502 ORTHO05D003592 6.2e-20 101.3 111 53.2
SalBow2G2645 Salvia bowleyana HOM05D002502 ORTHO05D003592 6.2e-20 101.3 66 77.3
CSS0041556 Camellia sinensis var. sinensis HOM05D002502 ORTHO05D003592 8.1e-20 100.9 91 60.4
MELO3C010735.2 Cucumis melo HOM05D002502 ORTHO05D003592 8.1e-20 100.9 92 58.7
FvH4_6g37740 Fragaria vesca HOM05D002502 ORTHO05D003592 8.1e-20 100.9 112 58.9
TWI34G1958 Tripterygium wilfordii HOM05D002502 ORTHO05D003592 8.1e-20 100.9 109 56.0
Haze_01417 Corylus avellana HOM05D002502 ORTHO05D003592 1.4e-19 100.1 107 57.0
arahy.Tifrunner.gnm1.ann1.UDT6NA Arachis hypogaea HOM05D002502 ORTHO05D003592 1.8e-19 99.8 93 63.4
Duzib168G1518 Durio zibethinus HOM05D002502 ORTHO05D003592 1.8e-19 99.8 67 74.6
Migut.L01444 Erythranthe guttata HOM05D002502 ORTHO05D003592 1.8e-19 99.8 71 73.2
FvH4_3g28930 Fragaria vesca HOM05D002502 ORTHO05D003592 1.8e-19 99.8 89 64.0
FAN11G1940 Fragaria x ananassa HOM05D002502 ORTHO05D003592 1.8e-19 99.8 89 64.0
Aqoxy3G02133 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 2.4e-19 99.4 111 55.0
Eucgr.F03998 Eucalyptus grandis HOM05D002502 ORTHO05D003592 2.4e-19 99.4 67 76.1
Prupe.6G149400 Prunus persica HOM05D002502 ORTHO05D003592 2.4e-19 99.4 111 59.5
AL1G14420 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 3.1e-19 99.0 94 59.6
EL10Ac8g18494 Beta vulgaris HOM05D002502 ORTHO05D003592 3.1e-19 99.0 67 76.1
AT1G50920 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 4.0e-19 98.6 94 58.5
AUR62039750 Chenopodium quinoa HOM05D002502 ORTHO05D003592 4.0e-19 98.6 66 74.2
RcHm_v2.0_Chr5g0051831 Rosa chinensis HOM05D002502 ORTHO05D003592 4.0e-19 98.6 66 75.8
Solyc07g053730.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 4.0e-19 98.6 112 52.7
ATR0772G044 Amborella trichopoda HOM05D002502 ORTHO05D003592 5.3e-19 98.2 66 74.2
FAN02G3956 Fragaria x ananassa HOM05D002502 ORTHO05D003592 5.3e-19 98.2 112 58.9
Os06g0195900 Oryza sativa ssp. japonica HOM05D002502 ORTHO05D003592 5.3e-19 98.2 67 76.1
PGR119G0499 Punica granatum HOM05D002502 ORTHO05D003592 5.3e-19 98.2 110 56.4
ECA246G4618 Erigeron canadensis HOM05D002502 ORTHO05D003592 6.9e-19 97.8 66 72.7
FAN16G0533 Fragaria x ananassa HOM05D002502 ORTHO05D003592 6.9e-19 97.8 66 74.2
Thhalv10009939m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 9.0e-19 97.4 113 54.9
SHI29761 Sapria himalayana HOM05D002502 ORTHO05D003592 9.0e-19 97.4 110 57.3
TAR365G0446 Trochodendron aralioides HOM05D002502 ORTHO05D003592 1.2e-18 97.1 153 45.8
AUR62039964 Chenopodium quinoa HOM05D002502 ORTHO05D003592 1.5e-18 96.7 66 74.2
COL.COLO4_33612 Corchorus olitorius HOM05D002502 ORTHO05D003592 2.0e-18 96.3 61 78.7
MD11G1222700 Malus domestica HOM05D002502 ORTHO05D003592 2.0e-18 96.3 66 77.3
PSO478G3145 Papaver somniferum HOM05D002502 ORTHO05D003592 2.0e-18 96.3 116 54.3
Prupe.5G045700 Prunus persica HOM05D002502 ORTHO05D003592 2.0e-18 96.3 66 75.8
Hund11875 Selenicereus undatus HOM05D002502 ORTHO05D003592 2.0e-18 96.3 66 75.8
ATR0763G231 Amborella trichopoda HOM05D002502 ORTHO05D003592 2.6e-18 95.9 66 72.7
Os07g0110200 Oryza sativa ssp. japonica HOM05D002502 ORTHO05D003592 2.6e-18 95.9 67 74.6
BraA06t23909Z Brassica rapa HOM05D002502 ORTHO05D003592 3.4e-18 95.5 104 56.7
CANSAT01G0379 Cannabis sativa HOM05D002502 ORTHO05D003592 3.4e-18 95.5 63 74.6
CANSAT78G2062 Cannabis sativa HOM05D002502 ORTHO05D003592 3.4e-18 95.5 63 74.6
Carub.0001s0396 Capsella rubella HOM05D002502 ORTHO05D003592 3.4e-18 95.5 66 71.2
Nitab4.5_0009394g0010 Nicotiana tabacum HOM05D002502 ORTHO05D003592 3.4e-18 95.5 74 67.6
Prupe.4G247400 Prunus persica HOM05D002502 ORTHO05D003592 3.4e-18 95.5 66 75.8
Sopen01g032590 Solanum pennellii HOM05D002502 ORTHO05D003592 3.4e-18 95.5 91 58.2
PGSC0003DMG400026818 Solanum tuberosum HOM05D002502 ORTHO05D003592 4.5e-18 95.1 91 57.1
Thhalv10006811m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 7.6e-18 94.4 66 69.7
MD06G1031200 Malus domestica HOM05D002502 ORTHO05D003592 7.6e-18 94.4 66 75.8
CAN.G209.22 Capsicum annuum HOM05D002502 ORTHO05D003592 1.0e-17 94.0 66 69.7
CARHR004090 Cardamine hirsuta HOM05D002502 ORTHO05D003592 1.0e-17 94.0 97 56.7
Nitab4.5_0004196g0030 Nicotiana tabacum HOM05D002502 ORTHO05D003592 1.0e-17 94.0 136 48.5
Rhsim04G0188800 Rhododendron simsii HOM05D002502 ORTHO05D003592 1.0e-17 94.0 67 71.6
C05p08410 Brassica napus HOM05D002502 ORTHO05D003592 1.3e-17 93.6 106 55.7
Lsat_1_v5_gn_8_160141 Lactuca sativa HOM05D002502 ORTHO05D003592 1.3e-17 93.6 65 67.7
A10p03140 Brassica napus HOM05D002502 ORTHO05D003592 1.7e-17 93.2 66 69.7
C05p02910 Brassica napus HOM05D002502 ORTHO05D003592 1.7e-17 93.2 66 69.7
BolC5t29072H Brassica oleracea HOM05D002502 ORTHO05D003592 1.7e-17 93.2 66 69.7
BraA10t42587Z Brassica rapa HOM05D002502 ORTHO05D003592 1.7e-17 93.2 66 69.7
PGSC0003DMG400030186 Solanum tuberosum HOM05D002502 ORTHO05D017711 1.7e-17 93.2 67 70.1
A06p06930 Brassica napus HOM05D002502 ORTHO05D003592 3.8e-17 92.0 104 55.8
Peaxi162Scf00592g00003 Petunia axillaris HOM05D002502 ORTHO05D003592 3.8e-17 92.0 112 53.6
Sopen07g027710 Solanum pennellii HOM05D002502 ORTHO05D003592 3.8e-17 92.0 91 56.0
BcaB03g13475 Brassica carinata HOM05D002502 ORTHO05D003592 4.9e-17 91.7 66 68.2
Sp1g03550 Schrenkiella parvula HOM05D002502 ORTHO05D003592 4.9e-17 91.7 94 55.3
BcaC07g36887 Brassica carinata HOM05D002502 ORTHO05D003592 6.5e-17 91.3 66 66.7
A08p36740 Brassica napus HOM05D002502 ORTHO05D003592 6.5e-17 91.3 66 66.7
C08p01410 Brassica napus HOM05D002502 ORTHO05D003592 6.5e-17 91.3 66 66.7
BolC8t46950H Brassica oleracea HOM05D002502 ORTHO05D003592 6.5e-17 91.3 66 66.7
BraA08t35576Z Brassica rapa HOM05D002502 ORTHO05D003592 6.5e-17 91.3 66 66.7
PSO761G0496 Papaver somniferum HOM05D002502 ORTHO05D003592 6.5e-17 91.3 67 67.2
Cc00_g01510 Coffea canephora HOM05D002502 ORTHO05D003592 8.4e-17 90.9 168 41.1
Aa31LG1G8620 Aethionema arabicum HOM05D002502 ORTHO05D003592 1.1e-16 90.5 75 62.7
AagrBONN_evm.TU.Sc2ySwM_117.2548 Anthoceros agrestis HOM05D002502 ORTHO05D003592 1.4e-16 90.1 106 51.9
Prupe.1G572400 Prunus persica HOM05D002502 ORTHO05D003592 1.4e-16 90.1 111 51.4
Zm00001eb278540 Zea mays HOM05D002502 ORTHO05D003592 1.4e-16 90.1 63 71.4
PSO170G2022 Papaver somniferum HOM05D002502 ORTHO05D003592 1.9e-16 89.7 67 65.7
Zm00001eb373990 Zea mays HOM05D002502 ORTHO05D003592 2.5e-16 89.4 63 71.4
BraA06t23215Z Brassica rapa HOM05D002502 ORTHO05D017711 3.2e-16 89.0 92 54.3
AUR62015502 Chenopodium quinoa HOM05D002502 ORTHO05D003592 4.2e-16 88.6 60 73.3
Pp3c20_4830 Physcomitrium patens HOM05D002502 ORTHO05D003592 4.2e-16 88.6 104 49.0
PSO455G0171 Papaver somniferum HOM05D002502 ORTHO05D003592 7.1e-16 87.8 96 52.1
GSVIVG01034588001 Vitis vinifera HOM05D002502 ORTHO05D003592 7.1e-16 87.8 65 72.3
COL.COLO4_09008 Corchorus olitorius HOM05D002502 ORTHO05D003592 9.3e-16 87.4 169 44.4
Oeu028550.1 Olea europaea HOM05D002502 ORTHO05D003592 3.5e-15 85.5 58 74.1
FAN05G4108 Fragaria x ananassa HOM05D002502 ORTHO05D003592 5.1e-14 81.6 101 55.4
CBR_g77869 Chara braunii HOM05D002502 ORTHO05D003592 6.7e-14 81.3 90 55.6
unitig_749.g14333 Utricularia gibba HOM05D002502 ORTHO05D003592 1.1e-13 80.5 110 50.9
FAN14G2513 Fragaria x ananassa HOM05D002502 ORTHO05D003592 3.3e-13 79.0 123 46.3
RcHm_v2.0_Chr5g0051921 Rosa chinensis HOM05D002502 ORTHO05D003592 4.3e-13 78.6 114 50.9
CDE04G3381 Ceratophyllum demersum HOM05D002502 ORTHO05D003592 1.3e-12 77.0 98 52.0
SMO147G0287 Selaginella moellendorffii HOM05D002502 ORTHO05D003592 3.7e-12 75.5 58 63.8
CARHR010410 Cardamine hirsuta HOM05D002502 ORTHO05D003592 8.2e-12 74.3 49 73.5
HPP92_004879 Vanilla planifolia HOM05D002502 ORTHO05D003592 6.9e-11 71.2 108 47.2
Cpa.g.c44337.1 Carica papaya HOM05D002502 ORTHO05D017711 2.0e-10 69.7 43 79.1
MCO16G373 Micromonas commoda HOM05D002502 ORTHO05D003592 2.0e-10 69.7 59 61.0
A06p00830 Brassica napus HOM05D001067 ORTHO05D000876 7.6e-10 67.8 63 58.7
BraSC277t45949Z Brassica rapa HOM05D001067 ORTHO05D000876 7.6e-10 67.8 63 58.7
AUR62002199 Chenopodium quinoa HOM05D004509 ORTHO05D005568 3.8e-09 65.5 116 43.1
HPP92_002934 Vanilla planifolia HOM05D002502 ORTHO05D017711 1.4e-08 63.5 89 47.2
Cre10.g459500 Chlamydomonas reinhardtii HOM05D002502 ORTHO05D003592 2.3e-06 56.2 59 47.5
Lsat_1_v5_gn_1_11801 Lactuca sativa HOM05D002502 ORTHO05D017711 5.1e-06 55.1 75 45.3
PRCOL_00004008 Prasinoderma coloniale HOM05D002502 ORTHO05D003592 5.1e-06 55.1 57 52.6


User provided reference genes

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