Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01486_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 6.2e-177 624.0 316 100.0
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 2.0e-130 469.5 266 91.0
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 2.0e-130 469.5 266 90.6
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 6.3e-129 464.5 266 90.2
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 3.7e-121 438.7 265 85.3
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 4.1e-120 435.3 266 85.3
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 5.4e-120 434.9 266 83.5
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 2.9e-118 429.1 266 82.7
arahy.Tifrunner.gnm1.ann1.21MRAZ Arachis hypogaea HOM05D002653 ORTHO05D002623 5.0e-118 428.3 261 83.1
Phvul.002G328600 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 1.5e-117 426.8 266 82.0
Phvul.002G328704 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 1.5e-117 426.8 266 82.0
VMungo0251G2737 Vigna mungo HOM05D002653 ORTHO05D002623 1.9e-117 426.4 266 82.0
arahy.Tifrunner.gnm1.ann1.GW217K Arachis hypogaea HOM05D002653 ORTHO05D002623 1.2e-116 423.7 261 82.4
Ca_27225_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 3.9e-110 402.1 266 83.1
QL04p064964 Quercus lobata HOM05D002653 ORTHO05D002623 7.5e-106 387.9 266 74.1
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 1.6e-103 380.2 266 73.3
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 2.7e-103 379.4 266 73.3
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 1.0e-102 377.5 266 72.9
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.0e-102 377.5 266 72.9
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.0e-102 377.5 266 72.9
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 5.1e-102 375.2 263 72.2
Atru.chr8.1038_Atru.chr8.1039 Acer truncatum HOM05D002653 ORTHO05D002623 1.9e-101 373.2 267 71.2
RcHm_v2.0_Chr2g0148311 Rosa chinensis HOM05D002653 ORTHO05D002623 4.3e-101 372.1 266 72.2
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 5.6e-101 371.7 263 72.6
Ciclev10010886m.g Citrus clementina HOM05D002653 ORTHO05D002623 4.7e-100 368.6 266 69.9
CiPaw.06G000600 Carya illinoinensis HOM05D002653 ORTHO05D002623 8.1e-100 367.9 266 71.1
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 1.1e-99 367.5 263 72.6
GSVIVG01019366001 Vitis vinifera HOM05D002653 ORTHO05D002623 1.4e-99 367.1 267 71.5
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 4.0e-99 365.5 266 69.9
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 8.9e-99 364.4 266 69.9
CSS0041142 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 2.0e-98 363.2 266 70.3
CSS0047039 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 2.0e-98 363.2 266 70.3
Cpa.g.sc119.2 Carica papaya HOM05D002653 ORTHO05D002623 1.3e-97 360.5 265 68.7
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 1.3e-97 360.5 275 68.4
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 2.2e-97 359.8 265 70.2
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 2.9e-97 359.4 265 68.3
Lj4C825G3 Lonicera japonica HOM05D002653 ORTHO05D002623 3.7e-97 359.0 265 69.1
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 6.4e-97 358.2 275 67.6
Nitab4.5_0006025g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 2.4e-96 356.3 268 67.2
vmacro03486 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 4.1e-96 355.5 275 67.3
MELO3C010025.2 Cucumis melo HOM05D002653 ORTHO05D002623 2.7e-95 352.8 281 66.5
CsaV3_1G044330 Cucumis sativus L. HOM05D002653 ORTHO05D002623 6.0e-95 351.7 264 70.1
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 1.0e-94 350.9 275 66.9
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 1.3e-94 350.5 265 67.5
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 1.3e-94 350.5 265 67.5
Sp2g22690 Schrenkiella parvula HOM05D002653 ORTHO05D002623 1.7e-94 350.1 255 69.4
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 2.3e-94 349.7 264 67.8
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 3.9e-94 349.0 281 66.2
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 5.1e-94 348.6 265 66.4
COL.COLO4_33575 Corchorus olitorius HOM05D002653 ORTHO05D002623 6.6e-94 348.2 265 66.8
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 6.6e-94 348.2 266 68.4
Peaxi162Scf00126g00524 Petunia axillaris HOM05D002653 ORTHO05D002623 1.5e-93 347.1 268 65.7
Gohir.D04G020351 Gossypium hirsutum HOM05D002653 ORTHO05D002623 1.9e-93 346.7 265 67.2
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 3.3e-93 345.9 264 67.0
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 4.3e-93 345.5 255 68.2
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 7.3e-93 344.7 255 67.8
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 7.3e-93 344.7 281 64.4
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 7.3e-93 344.7 268 64.9
Sed0003631 Sechium edule HOM05D002653 ORTHO05D002623 9.6e-93 344.4 268 66.8
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 2.1e-92 343.2 268 67.2
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 2.1e-92 343.2 266 66.2
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 3.6e-92 342.4 264 66.7
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 4.7e-92 342.0 268 65.3
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 4.7e-92 342.0 267 65.9
CARHR188760 Cardamine hirsuta HOM05D002653 ORTHO05D002623 6.2e-92 341.7 255 67.5
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 8.1e-92 341.3 263 68.4
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 1.4e-91 340.5 255 67.1
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 1.4e-91 340.5 255 67.1
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 1.8e-91 340.1 254 68.1
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 4.0e-91 339.0 266 67.3
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 1.5e-90 337.0 254 66.5
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 4.4e-90 335.5 283 64.3
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 2.2e-89 333.2 254 66.1
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 6.4e-89 331.6 254 67.3
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 1.1e-88 330.9 266 65.0
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 2.1e-87 326.6 267 65.2
Cc11_g00280 Coffea canephora HOM05D002653 ORTHO05D002623 7.8e-87 324.7 266 60.9
Migut.L00525 Erythranthe guttata HOM05D002653 ORTHO05D002623 3.9e-86 322.4 265 63.0
Migut.L00786 Erythranthe guttata HOM05D002653 ORTHO05D002623 3.9e-86 322.4 265 63.0
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 6.6e-86 321.6 265 63.4
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 2.5e-85 319.7 265 63.8
AUR62007656 Chenopodium quinoa HOM05D002653 ORTHO05D002623 3.3e-85 319.3 265 63.0
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 9.6e-85 317.8 267 63.7
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 4.4e-82 308.9 263 61.6
SalBow1G2769 Salvia bowleyana HOM05D002653 ORTHO05D002623 1.7e-81 307.0 265 62.6
SalBow1G3632 Salvia bowleyana HOM05D002653 ORTHO05D002623 2.9e-81 306.2 265 62.6
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 8.4e-81 304.7 261 60.9
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 1.8e-75 287.0 267 59.2
unitig_8.g3108 Utricularia gibba HOM05D002653 ORTHO05D002623 1.8e-75 287.0 277 57.0
Os08g0116566 Oryza sativa ssp. japonica HOM05D002653 ORTHO05D002623 3.1e-75 286.2 263 53.6
Ca_30710_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 5.8e-74 282.0 205 76.1
HPP92_001355 Vanilla planifolia HOM05D002653 ORTHO05D002623 5.8e-74 282.0 263 55.9
Zm00001eb260890 Zea mays HOM05D002653 ORTHO05D002623 7.6e-74 281.6 266 53.4
MD09G1170300 Malus domestica HOM05D002653 ORTHO05D002623 1.7e-73 280.4 264 57.6
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 1.0e-70 271.2 257 55.3
FAN05G4926 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.5e-66 257.3 177 72.9
Haze_24502 Corylus avellana HOM05D002653 ORTHO05D002623 3.8e-65 252.7 172 73.3
Ca_09437_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 3.9e-62 242.7 123 100.0
arahy.Tifrunner.gnm1.ann1.LJ799F Arachis hypogaea HOM05D002653 ORTHO05D002623 2.1e-60 236.9 272 53.3
Mapoly0009s0011 Marchantia polymorpha HOM05D002653 ORTHO05D002623 1.4e-59 234.2 274 48.5
SMO353G0260 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 2.4e-51 206.8 255 47.5
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 2.2e-49 200.3 198 54.5
Ca_14756_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 7.7e-42 175.3 96 96.9
Aqoxy4G01176 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 3.9e-38 162.9 125 66.4
Hma1.2p1_2738F.1_g327700 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 5.7e-37 159.1 127 62.2
arahy.Tifrunner.gnm1.ann1.U4FA7I Arachis hypogaea HOM05D002653 ORTHO05D002623 4.8e-36 156.0 114 71.1
HPP92_001361 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.8e-35 154.1 263 40.3
HPP92_000045 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.0e-33 148.3 137 56.2
arahy.Tifrunner.gnm1.ann1.FGIJ89 Arachis hypogaea HOM05D002653 ORTHO05D002623 1.7e-33 147.5 174 50.0
Gorai.012G024500 Gossypium raimondii HOM05D002653 ORTHO05D002623 4.7e-31 139.4 113 63.7
Haze_24503 Corylus avellana HOM05D002653 ORTHO05D002623 1.5e-29 134.4 96 72.9
CBR_g47051 Chara braunii HOM05D002653 ORTHO05D002623 4.8e-28 129.4 174 41.4
Actinidia28837 Actinidia chinensis HOM05D002653 ORTHO05D002623 1.3e-25 121.3 96 65.6
Actinidia28775 Actinidia chinensis HOM05D002313 ORTHO05D002623 2.0e-21 107.5 92 57.6
HPP92_010163 Vanilla planifolia HOM05D002653 ORTHO05D002623 2.0e-18 97.4 113 49.6
arahy.Tifrunner.gnm1.ann1.P3JCM3 Arachis hypogaea HOM05D002653 ORTHO05D002623 3.6e-15 86.7 96 53.1
arahy.Tifrunner.gnm1.ann1.Y0I0AR Arachis hypogaea HOM05D002653 ORTHO05D002623 1.8e-14 84.3 69 65.2
Actinidia28844 Actinidia chinensis HOM05D002313 ORTHO05D002623 5.2e-14 82.8 68 61.8
SEGI_37137 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 1.3e-12 78.2 61 62.3
Cfa027332 Carpinus fangiana HOM05D001092 ORTHO05D000923 8.3e-12 75.5 193 26.9
PRCOL_00001171 Prasinoderma coloniale HOM05D002653 ORTHO05D002623 4.1e-11 73.2 185 28.6
AUR62038227 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.1e-08 65.1 237 27.4
CARHR037730 Cardamine hirsuta HOM05D001092 ORTHO05D000923 1.5e-08 64.7 222 25.7
AUR62003914 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.9e-08 64.3 237 27.4
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 3.3e-08 63.5 64 53.1
CSS0037314 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 7.2e-08 62.4 190 27.4


User provided reference genes

Program Settings