Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 1.4e-90 336.3 169 100.0
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 2.7e-86 322.0 169 94.7
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 2.7e-86 322.0 169 93.5
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 7.9e-86 320.5 169 94.1
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 1.1e-84 316.6 169 92.3
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 3.3e-84 315.1 169 91.1
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 1.6e-83 312.8 169 89.9
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 2.2e-83 312.4 169 89.9
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 3.7e-83 311.6 166 91.6
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 6.3e-83 310.8 166 91.6
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.2e-81 306.6 169 87.0
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 2.6e-81 305.4 169 87.6
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 4.5e-81 304.7 169 87.6
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 7.7e-81 303.9 169 87.0
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 7.7e-81 303.9 167 88.0
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 1.3e-80 303.1 168 86.9
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.3e-80 303.1 169 87.6
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 2.2e-80 302.4 169 87.0
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 5.0e-80 301.2 169 88.8
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 6.5e-80 300.8 169 85.8
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 8.5e-80 300.4 169 85.8
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 8.5e-80 300.4 169 85.8
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 1.9e-79 299.3 168 86.9
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 4.2e-79 298.1 169 85.8
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 7.2e-79 297.4 169 85.2
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 7.2e-79 297.4 169 85.2
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 9.4e-79 297.0 168 86.3
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.2e-78 296.6 194 78.4
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.2e-78 296.6 168 84.5
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 2.1e-78 295.8 169 84.0
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 2.1e-78 295.8 166 84.3
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 2.7e-78 295.4 169 85.2
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 6.1e-78 294.3 169 85.2
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 7.9e-78 293.9 168 83.9
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 7.9e-78 293.9 169 83.4
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 7.9e-78 293.9 169 83.4
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 1.0e-77 293.5 166 85.5
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.0e-77 293.5 166 85.5
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.0e-77 293.5 166 85.5
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 1.0e-77 293.5 166 85.5
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.8e-77 292.7 166 85.5
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 2.3e-77 292.4 169 84.6
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 3.9e-77 291.6 167 82.6
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 5.1e-77 291.2 169 82.2
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 6.7e-77 290.8 169 82.8
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 2.0e-76 289.3 169 82.2
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 2.5e-76 288.9 168 83.9
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 2.5e-76 288.9 169 82.8
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.5e-76 288.9 168 83.3
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 3.3e-76 288.5 169 82.2
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 5.7e-76 287.7 169 81.1
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 7.4e-76 287.3 166 82.5
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 9.7e-76 287.0 169 81.1
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.3e-75 286.6 169 80.5
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 1.3e-75 286.6 169 80.5
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.7e-75 286.2 169 79.9
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 1.7e-75 286.2 169 81.1
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.8e-75 285.4 168 82.1
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.8e-75 285.4 168 82.1
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 3.7e-75 285.0 169 82.8
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 3.7e-75 285.0 169 82.8
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 6.3e-75 284.3 169 81.7
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 8.2e-75 283.9 169 79.3
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 8.2e-75 283.9 169 79.9
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 8.2e-75 283.9 166 81.9
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 1.1e-74 283.5 169 79.3
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 1.1e-74 283.5 169 81.1
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.4e-74 283.1 169 78.7
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.4e-74 282.3 169 79.3
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.1e-74 281.6 167 79.6
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 4.1e-74 281.6 148 91.9
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 5.3e-74 281.2 169 80.5
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.3e-74 281.2 183 77.0
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 6.9e-74 280.8 169 81.1
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.9e-74 280.8 183 77.0
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.9e-74 280.8 183 77.0
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 9.1e-74 280.4 182 76.9
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 9.1e-74 280.4 186 75.3
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 2.0e-73 279.3 169 78.1
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 3.4e-73 278.5 169 81.1
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 5.9e-73 277.7 169 78.1
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 2.2e-72 275.8 149 87.9
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 2.2e-72 275.8 167 80.8
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 2.9e-72 275.4 149 87.9
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.8e-72 275.0 169 76.9
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 8.5e-72 273.9 169 80.5
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-71 273.5 169 75.7
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.1e-71 273.5 192 71.9
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.9e-71 272.7 169 78.7
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 9.4e-71 270.4 169 76.9
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 2.1e-70 269.2 169 76.3
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 2.7e-70 268.9 207 66.7
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 4.7e-70 268.1 168 74.4
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.4e-69 266.5 150 84.0
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 3.0e-69 265.4 149 83.9
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 3.9e-69 265.0 167 75.4
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 1.1e-68 263.5 149 84.6
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.1e-68 263.5 149 83.2
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.0e-68 262.7 143 86.7
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.3e-68 261.9 158 80.4
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.7e-68 261.2 214 64.0
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 9.7e-68 260.4 150 81.3
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 2.8e-67 258.8 145 84.8
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.8e-67 258.8 158 79.7
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.4e-66 255.8 147 82.3
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 4.1e-66 255.0 169 73.4
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 5.3e-66 254.6 153 82.4
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 5.3e-66 254.6 168 70.2
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 5.3e-66 254.6 169 74.6
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.2e-65 253.4 154 79.2
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 4.5e-65 251.5 166 73.5
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 7.7e-65 250.8 149 80.5
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 5.0e-64 248.1 177 71.8
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 5.0e-64 248.1 168 72.6
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 5.5e-63 244.6 166 78.9
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 7.2e-63 244.2 239 56.9
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 3.9e-61 238.4 149 76.5
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 8.8e-61 237.3 126 85.7
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.3e-59 233.4 167 70.1
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 2.2e-59 232.6 149 75.2
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 2.2e-59 232.6 170 70.6
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 4.8e-59 231.5 124 86.3
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 4.8e-59 231.5 156 74.4
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 1.2e-57 226.9 152 72.4
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 1.6e-54 216.5 168 65.5
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 3.6e-54 215.3 123 79.7
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.7e-54 214.9 132 76.5
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 6.7e-53 211.1 155 65.8
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 8.8e-53 210.7 188 56.4
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 8.8e-53 210.7 124 83.9
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 8.8e-53 210.7 166 67.5
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 3.7e-51 205.3 121 83.5
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 3.7e-51 205.3 121 83.5
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 4.8e-51 204.9 121 82.6
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 6.3e-51 204.5 124 79.8
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 8.3e-51 204.1 121 82.6
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 4.1e-50 201.8 155 68.4
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 1.2e-49 200.3 124 81.5
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 1.2e-49 200.3 123 79.7
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.5e-47 192.6 146 69.9
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.6e-46 189.9 141 70.2
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 4.7e-46 188.3 134 66.4
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 9.1e-42 174.1 106 82.1
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 1.6e-38 163.3 90 81.1
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 4.7e-38 161.8 90 85.6
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.8e-35 152.5 94 83.0
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 7.3e-31 137.9 106 63.2
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 9.5e-31 137.5 83 79.5
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 2.9e-27 125.9 87 67.8
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 4.1e-26 122.1 100 60.0
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 1.2e-25 120.6 103 63.1
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.0e-24 117.5 82 65.9
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.0e-24 115.9 75 78.7
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.9e-24 115.5 73 78.1
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.0e-24 115.2 75 72.0
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.4e-20 102.4 74 62.2
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.1e-17 93.2 64 65.6
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.0e-16 90.9 65 69.2
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 8.6e-16 87.8 130 40.0
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 1.1e-15 87.4 160 36.2
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 3.6e-14 82.4 49 83.7
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 3.6e-14 82.4 49 83.7
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.2e-12 77.4 111 50.5
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.4e-12 75.5 44 77.3
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.1e-10 68.9 38 78.9


User provided reference genes

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