Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 2.0e-146 522.3 252 100.0
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 1.4e-139 499.6 252 94.4
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 2.0e-138 495.7 252 94.0
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 3.9e-137 491.5 252 93.7
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 2.5e-136 488.8 252 92.9
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 2.5e-136 488.8 252 92.9
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 3.3e-136 488.4 252 92.5
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 3.3e-136 488.4 252 92.9
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 1.8e-134 482.6 252 90.9
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 3.1e-134 481.9 252 90.5
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 8.9e-134 480.3 252 90.1
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 1.2e-133 479.9 252 90.1
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 3.7e-132 474.9 255 89.0
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 1.9e-131 472.6 253 89.3
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 2.4e-131 472.2 252 89.3
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 2.4e-131 472.2 255 89.4
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 3.2e-131 471.9 255 88.6
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 3.2e-131 471.9 252 89.7
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 4.1e-131 471.5 254 89.8
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 4.1e-131 471.5 254 89.8
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 4.1e-131 471.5 252 88.5
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 5.4e-131 471.1 255 88.6
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 2.1e-130 469.2 255 88.6
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 2.1e-130 469.2 255 88.6
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 2.1e-130 469.2 256 89.1
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 2.1e-130 469.2 254 88.2
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 2.7e-130 468.8 256 88.3
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 3.5e-130 468.4 252 88.5
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 4.6e-130 468.0 254 89.0
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 4.6e-130 468.0 255 88.2
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 7.8e-130 467.2 253 88.9
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 7.8e-130 467.2 256 87.1
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.3e-129 466.5 255 88.6
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 1.7e-129 466.1 256 88.7
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.7e-129 466.1 255 87.8
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 3.0e-129 465.3 257 87.2
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 3.9e-129 464.9 254 88.6
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.9e-129 464.9 255 87.8
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.9e-129 464.9 255 87.8
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 3.9e-129 464.9 256 87.9
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 5.0e-129 464.5 256 87.9
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 5.0e-129 464.5 255 87.5
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 5.0e-129 464.5 255 87.1
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 6.6e-129 464.2 256 87.9
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 6.6e-129 464.2 252 87.7
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 6.6e-129 464.2 255 87.5
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 1.5e-128 463.0 255 87.8
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 1.9e-128 462.6 255 86.7
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 1.9e-128 462.6 255 87.5
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 2.5e-128 462.2 253 88.5
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 2.5e-128 462.2 253 88.5
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 2.5e-128 462.2 253 88.5
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 2.5e-128 462.2 255 87.5
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 3.3e-128 461.8 254 87.4
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 4.3e-128 461.5 256 87.9
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 5.6e-128 461.1 255 87.1
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 5.6e-128 461.1 254 87.4
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 7.3e-128 460.7 255 87.1
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 9.5e-128 460.3 255 87.5
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 1.2e-127 459.9 255 86.3
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 1.6e-127 459.5 256 87.1
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 1.6e-127 459.5 255 86.3
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 2.8e-127 458.8 252 88.5
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.8e-127 458.8 261 86.2
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 2.8e-127 458.8 256 85.9
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 3.6e-127 458.4 255 85.5
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 4.7e-127 458.0 256 86.7
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 4.7e-127 458.0 253 87.7
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 6.2e-127 457.6 255 86.7
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 6.2e-127 457.6 253 88.1
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 6.2e-127 457.6 255 85.5
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 8.1e-127 457.2 237 92.8
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 1.4e-126 456.4 255 87.1
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 2.3e-126 455.7 255 85.5
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 3.1e-126 455.3 256 86.7
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 3.1e-126 455.3 255 85.1
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 4.0e-126 454.9 255 86.7
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 5.2e-126 454.5 255 85.5
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 6.8e-126 454.1 249 88.4
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 6.8e-126 454.1 249 88.4
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 8.9e-126 453.8 256 84.8
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 3.4e-125 451.8 253 87.0
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 3.4e-125 451.8 256 84.8
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 4.4e-125 451.4 255 85.5
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 4.4e-125 451.4 253 87.0
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 7.5e-125 450.7 254 84.6
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 1.3e-124 449.9 255 84.3
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 1.3e-124 449.9 254 85.0
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 1.3e-124 449.9 256 84.4
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.7e-124 449.5 255 85.5
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.2e-124 449.1 254 84.6
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 2.9e-124 448.7 254 84.6
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 8.3e-124 447.2 257 82.5
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.1e-123 446.8 255 85.1
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 1.1e-123 446.8 253 85.4
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 1.4e-123 446.4 253 84.6
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 1.4e-123 446.4 255 84.3
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 1.4e-123 446.4 252 85.3
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 1.4e-123 446.4 253 85.4
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 5.4e-123 444.5 255 83.5
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 1.2e-122 443.4 253 84.2
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 2.1e-122 442.6 255 83.1
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 3.5e-122 441.8 255 82.4
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 7.8e-122 440.7 255 83.9
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.0e-121 440.3 257 80.9
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 1.7e-121 439.5 255 82.7
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 3.0e-121 438.7 239 89.5
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 3.9e-121 438.3 306 73.2
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 4.3e-120 434.9 257 80.5
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 1.8e-118 429.5 283 75.6
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 1.1e-115 420.2 252 83.3
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 1.1e-115 420.2 260 76.5
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 6.6e-113 411.0 232 81.9
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 1.9e-112 409.5 294 71.8
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 7.6e-109 397.5 267 74.2
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 9.9e-109 397.1 260 76.5
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 4.9e-108 394.8 219 86.3
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 2.4e-107 392.5 230 79.1
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 2.7e-106 389.0 227 79.3
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 1.3e-105 386.7 249 72.7
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 3.6e-103 378.6 233 75.1
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 8.1e-103 377.5 319 63.3
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.2e-101 373.6 232 75.4
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.2e-101 373.6 232 75.4
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 5.8e-101 371.3 260 70.8
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.1e-99 367.1 239 78.2
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 9.3e-99 364.0 202 84.2
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 2.1e-98 362.8 260 70.0
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 1.0e-97 360.5 255 71.4
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 1.8e-97 359.8 257 67.7
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 1.9e-96 356.3 257 66.9
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 3.9e-89 332.0 250 68.8
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 8.4e-84 314.3 168 92.3
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 1.2e-82 310.5 161 90.1
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 2.3e-81 306.2 160 89.4
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 3.0e-81 305.8 162 88.9
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 8.7e-81 304.3 226 70.4
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 1.5e-80 303.5 252 58.7
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 7.4e-80 301.2 201 74.6
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.2e-74 283.9 183 76.5
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 2.3e-73 279.6 162 84.6
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 2.2e-71 273.1 232 53.0
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.4e-70 269.6 267 57.3
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 2.9e-60 236.1 135 83.0
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 1.4e-57 227.3 117 92.3
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 2.2e-55 219.9 116 90.5
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 3.2e-51 206.1 195 48.7
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 5.2e-49 198.7 101 95.0
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 3.5e-45 186.0 100 89.0
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 4.5e-45 185.7 121 74.4
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 2.2e-44 183.3 165 59.4
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 2.7e-42 176.4 211 45.5
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 1.8e-41 173.7 83 94.0
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 3.4e-40 169.5 84 89.3
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 1.1e-38 164.5 100 82.0
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.3e-36 157.5 89 83.1
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 2.3e-36 156.8 83 86.7
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.8e-34 149.8 89 79.8
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 6.1e-34 148.7 89 78.7
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.3e-33 146.7 77 87.0
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 2.3e-33 146.7 97 77.3
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 8.9e-33 144.8 89 77.5
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 6.3e-31 138.7 81 81.5
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.1e-30 137.9 81 81.5
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 3.2e-30 136.3 84 79.8
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.0e-29 133.7 81 79.0
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.7e-29 133.3 75 82.7
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.7e-29 133.3 75 82.7
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.7e-29 133.3 75 82.7
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.7e-29 133.3 75 82.7
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.0e-28 131.3 75 81.3
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 3.3e-27 126.3 75 78.7
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.1e-26 123.6 71 81.7
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 6.1e-26 122.1 82 75.6
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 8.0e-26 121.7 76 77.6
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 8.6e-12 75.1 41 85.4
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 1.1e-11 74.7 55 72.7
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 2.4e-06 57.0 29 93.1


User provided reference genes

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