Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00993_v3 Cicer arietinum L. HOM05D001365 ORTHO05D001291 2.0e-39 165.6 102 100.0
Glyma.18G040400 Glycine max HOM05D001365 ORTHO05D001291 3.6e-25 118.2 109 75.2
Glyma.11G216200 Glycine max HOM05D001365 ORTHO05D001291 3.0e-24 115.2 110 75.5
Lj6g0020228 Lotus japonicus HOM05D001365 ORTHO05D001291 1.2e-23 113.2 108 75.9
Phvul.001G230200 Phaseolus vulgaris HOM05D001365 ORTHO05D001291 9.8e-23 110.2 110 73.6
VMungo1383G3034 Vigna mungo HOM05D001365 ORTHO05D001291 2.8e-22 108.6 110 72.7
Medtr3g065490 Medicago truncatula HOM05D001365 ORTHO05D001291 2.7e-20 102.1 107 60.7
Psat5g121800 Pisum sativum HOM05D001365 ORTHO05D001291 2.9e-19 98.6 107 69.2
TPR.G24922 Trifolium pratense HOM05D001365 ORTHO05D001291 2.5e-18 95.5 108 57.4
Cfa007813 Carpinus fangiana HOM05D001365 ORTHO05D001291 1.4e-16 89.7 100 56.0
Ca_17103_v3 Cicer arietinum L. HOM05D001365 ORTHO05D001291 4.0e-16 88.2 159 51.6
Ca_30889_v3 Cicer arietinum L. HOM05D001365 ORTHO05D001291 4.0e-16 88.2 159 51.6
Prupe.3G160800 Prunus persica HOM05D001365 ORTHO05D001291 8.9e-16 87.0 101 65.3
QL02p058151 Quercus lobata HOM05D001365 ORTHO05D001291 3.4e-15 85.1 107 51.4
CANSAT64G0472 Cannabis sativa HOM05D001365 ORTHO05D001291 5.8e-15 84.3 110 48.2
GSVIVG01030785001 Vitis vinifera HOM05D001365 ORTHO05D001291 1.3e-14 83.2 104 54.8
Thecc.07G194100 Theobroma cacao HOM05D001365 ORTHO05D001291 2.2e-14 82.4 103 51.5
Hma1.2p1_0158F.1_g070180 Hydrangea macrophylla HOM05D001365 ORTHO05D001291 2.9e-14 82.0 105 50.5
CiPaw.03G071900 Carya illinoinensis HOM05D001365 ORTHO05D001291 3.7e-14 81.6 101 51.5
CiPaw.04G047400 Carya illinoinensis HOM05D001365 ORTHO05D001291 3.7e-14 81.6 101 53.5
Dinv19035 Davidia involucrata HOM05D001365 ORTHO05D001291 3.7e-14 81.6 105 50.5
arahy.Tifrunner.gnm1.ann1.F8UVUT Arachis hypogaea HOM05D001365 ORTHO05D001291 4.9e-14 81.3 109 66.1
Atru.chr1.1927 Acer truncatum HOM05D001365 ORTHO05D001291 8.3e-14 80.5 107 48.6
Dinv28203 Davidia involucrata HOM05D001365 ORTHO05D001291 1.1e-13 80.1 106 51.9
Actinidia28808 Actinidia chinensis HOM05D001365 ORTHO05D001291 1.8e-13 79.3 106 49.1
TWI77G0142 Tripterygium wilfordii HOM05D001365 ORTHO05D001291 1.8e-13 79.3 103 50.5
Duzib187G1750 Durio zibethinus HOM05D001365 ORTHO05D001291 2.4e-13 79.0 108 50.0
Duzib268G1557 Durio zibethinus HOM05D001365 ORTHO05D001291 1.2e-12 76.6 101 51.5
PGR042G1980 Punica granatum HOM05D001365 ORTHO05D001291 3.5e-12 75.1 108 45.4
MSTRG.2616 Avicennia marina HOM05D001365 ORTHO05D001291 6.0e-12 74.3 98 48.0
Solyc11g011130.3 Solanum lycopersicum HOM05D001365 ORTHO05D001291 6.0e-12 74.3 98 58.2
Sopen11g005890 Solanum pennellii HOM05D001365 ORTHO05D001291 6.0e-12 74.3 98 58.2
PGSC0003DMG402015684 Solanum tuberosum HOM05D001365 ORTHO05D001291 6.0e-12 74.3 98 57.1
TWI74G1290 Tripterygium wilfordii HOM05D001365 ORTHO05D001291 1.0e-11 73.6 109 46.8
Actinidia35730 Actinidia chinensis HOM05D001365 ORTHO05D001291 1.3e-11 73.2 106 47.2
Peaxi162Scf00305g00056 Petunia axillaris HOM05D001365 ORTHO05D001291 1.3e-11 73.2 113 46.9
THA.LOC104823841 Tarenaya hassleriana HOM05D001365 ORTHO05D001291 1.3e-11 73.2 105 42.9
Ciclev10012354m.g Citrus clementina HOM05D001365 ORTHO05D001291 5.0e-11 71.2 111 45.0
Sp7g04340 Schrenkiella parvula HOM05D001365 ORTHO05D001291 5.0e-11 71.2 112 44.6
COL.COLO4_32267 Corchorus olitorius HOM05D001365 ORTHO05D001291 1.1e-10 70.1 127 40.9
QL93p0100_0542 Quercus lobata HOM05D001365 ORTHO05D001291 1.1e-10 70.1 135 40.7
THA.LOC104822306 Tarenaya hassleriana HOM05D001365 ORTHO05D001291 1.1e-10 70.1 103 42.7
arahy.Tifrunner.gnm1.ann1.ZQUJ2M Arachis hypogaea HOM05D010838 ORTHO05D011964 2.5e-10 68.9 89 70.8
TWI53G0161 Tripterygium wilfordii HOM05D001365 ORTHO05D001291 4.3e-10 68.2 111 45.0
PGSC0003DMG400023623 Solanum tuberosum HOM05D001365 ORTHO05D001291 5.6e-10 67.8 106 43.4
arahy.Tifrunner.gnm1.ann1.4ZTL4S Arachis hypogaea HOM05D001365 ORTHO05D001291 7.3e-10 67.4 133 46.6
Ca_23460_v3 Cicer arietinum L. HOM05D001365 ORTHO05D001291 2.1e-09 65.9 38 86.8
FvH4_1g28810 Fragaria vesca HOM05D001365 ORTHO05D001291 2.8e-09 65.5 102 52.9
Manes.02G076900 Manihot esculenta HOM05D001365 ORTHO05D001291 2.8e-09 65.5 105 41.0
Sed0006931 Sechium edule HOM05D001365 ORTHO05D001291 1.8e-08 62.8 106 41.5
Haze_13611 Corylus avellana HOM05D001365 ORTHO05D001291 2.3e-08 62.4 100 46.0
Carub.0007s3288 Capsella rubella HOM05D001365 ORTHO05D001291 3.1e-08 62.0 121 37.2
Nn4g24274 Nelumbo nucifera HOM05D001365 ORTHO05D001291 3.1e-08 62.0 100 55.0
TAR629G1868 Trochodendron aralioides HOM05D001365 ORTHO05D001291 3.1e-08 62.0 107 42.1
Aqoxy3G00046 Aquilegia oxysepala HOM05D001365 ORTHO05D001291 4.0e-08 61.6 101 42.6
Carub.0002s1226 Capsella rubella HOM05D001365 ORTHO05D001291 4.0e-08 61.6 117 37.6
ECA238G1431 Erigeron canadensis HOM05D001365 ORTHO05D001291 5.2e-08 61.2 107 40.2
HanXRQChr15g0483181 Helianthus annuus HOM05D001365 ORTHO05D001291 5.2e-08 61.2 100 43.0
Solyc04g014460.4 Solanum lycopersicum HOM05D001365 ORTHO05D001291 6.8e-08 60.8 98 57.1
Migut.H02261 Erythranthe guttata HOM05D001365 ORTHO05D001291 8.9e-08 60.5 98 56.1
MELO3C020222.2 Cucumis melo HOM05D001365 ORTHO05D001291 1.2e-07 60.1 106 42.5
CsaV3_3G020960 Cucumis sativus L. HOM05D001365 ORTHO05D001291 1.2e-07 60.1 106 42.5
Gohir.A01G101100 Gossypium hirsutum HOM05D001365 ORTHO05D001291 1.2e-07 60.1 44 63.6
HanXRQChr14g0444691 Helianthus annuus HOM05D001365 ORTHO05D001291 1.2e-07 60.1 107 43.0
Potri.004G087000 Populus trichocarpa HOM05D001365 ORTHO05D001291 1.2e-07 60.1 101 43.6
unitig_0.g1696 Utricularia gibba HOM05D001365 ORTHO05D001291 1.2e-07 60.1 101 41.6
BcaB06g27126 Brassica carinata HOM05D001365 ORTHO05D001291 1.5e-07 59.7 109 45.9
A04p10900 Brassica napus HOM05D001365 ORTHO05D001291 1.5e-07 59.7 109 45.9
BraA04t16756Z Brassica rapa HOM05D001365 ORTHO05D001291 1.5e-07 59.7 109 45.9
Gohir.D01G086000 Gossypium hirsutum HOM05D001365 ORTHO05D001291 1.5e-07 59.7 44 63.6
Gorai.002G111400 Gossypium raimondii HOM05D001365 ORTHO05D001291 1.5e-07 59.7 44 63.6
Potri.017G129900 Populus trichocarpa HOM05D001365 ORTHO05D001291 1.5e-07 59.7 101 41.6
ATR0564G513 Amborella trichopoda HOM05D001365 ORTHO05D001291 3.4e-07 58.5 103 51.5
arahy.Tifrunner.gnm1.ann1.BPMY5V Arachis hypogaea HOM05D001365 ORTHO05D001291 3.4e-07 58.5 114 44.7
BcaC02g09607 Brassica carinata HOM05D001365 ORTHO05D001291 3.4e-07 58.5 42 64.3
Nitab4.5_0005065g0040 Nicotiana tabacum HOM05D001365 ORTHO05D001291 4.4e-07 58.2 109 44.0
Rhsim10G0177300 Rhododendron simsii HOM05D001365 ORTHO05D001291 4.4e-07 58.2 107 43.9
FAN19G0788 Fragaria x ananassa HOM05D001365 ORTHO05D001291 7.5e-07 57.4 112 48.2
FAN26G1535 Fragaria x ananassa HOM05D001365 ORTHO05D001291 7.5e-07 57.4 112 46.4
Manes.01G118500 Manihot esculenta HOM05D001365 ORTHO05D001291 7.5e-07 57.4 100 41.0
Oeu032324.4 Olea europaea HOM05D001365 ORTHO05D001291 7.5e-07 57.4 108 40.7
Zm00001eb280750 Zea mays HOM05D001365 ORTHO05D001291 7.5e-07 57.4 102 53.9
CARHR215120 Cardamine hirsuta HOM05D001365 ORTHO05D001291 1.7e-06 56.2 103 38.8
Thhalv10018970m.g Eutrema salsugineum HOM05D001365 ORTHO05D001291 2.9e-06 55.5 112 38.4
Sp5g21330 Schrenkiella parvula HOM05D001365 ORTHO05D001291 3.7e-06 55.1 101 39.6
AT5G37720 Arabidopsis thaliana HOM05D001365 ORTHO05D001291 6.4e-06 54.3 99 36.4
Ca_11548_v3 Cicer arietinum L. HOM05D001365 ORTHO05D147997 6.4e-06 54.3 33 84.8
Haze_14262 Corylus avellana HOM05D001365 ORTHO05D001291 6.4e-06 54.3 131 35.9
Thhalv10027861m.g Eutrema salsugineum HOM05D001365 ORTHO05D001291 8.3e-06 53.9 100 37.0


User provided reference genes

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