Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 4.6e-142 508.1 289 100.0
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 1.9e-100 369.8 268 79.9
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 1.3e-93 347.1 264 73.9
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 2.2e-91 339.7 269 72.1
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 2.8e-91 339.3 252 74.2
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.1e-90 337.4 240 76.2
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.1e-90 337.4 270 68.5
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 6.5e-88 328.2 264 70.1
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 5.7e-84 315.1 272 68.4
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 9.7e-84 314.3 255 67.5
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 4.8e-83 312.0 259 64.1
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 2.4e-82 309.7 248 66.5
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 4.1e-82 308.9 259 67.2
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 9.1e-82 307.8 254 62.2
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.2e-81 307.4 259 67.6
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 1.2e-81 307.4 259 67.6
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 5.9e-81 305.1 254 67.7
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 5.9e-81 305.1 199 74.4
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.9e-81 305.1 257 66.5
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 1.3e-80 303.9 265 63.4
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 2.2e-80 303.1 247 62.8
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 8.5e-80 301.2 258 64.0
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 1.1e-79 300.8 259 59.5
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 1.6e-78 297.0 259 59.5
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 2.1e-78 296.6 260 60.8
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 2.7e-78 296.2 239 64.4
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 1.4e-77 293.9 261 60.5
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 2.3e-77 293.1 235 62.6
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 2.3e-77 293.1 245 65.7
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 3.0e-77 292.7 193 73.6
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 3.0e-77 292.7 248 63.3
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.9e-77 292.4 255 64.7
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 8.8e-77 291.2 234 66.7
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 1.5e-76 290.4 239 61.5
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 5.7e-76 288.5 263 63.9
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 9.7e-76 287.7 266 63.2
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 2.2e-75 286.6 233 62.7
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 2.2e-75 286.6 272 61.0
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 2.2e-75 286.6 233 60.1
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 2.8e-75 286.2 268 60.8
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 2.8e-75 286.2 252 59.9
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 3.7e-75 285.8 242 63.2
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 3.7e-75 285.8 197 68.5
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 8.2e-75 284.6 235 65.5
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 1.4e-74 283.9 193 73.1
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 3.1e-74 282.7 239 65.3
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.5e-73 280.4 253 57.7
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 5.9e-73 278.5 250 63.2
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 7.7e-73 278.1 254 56.7
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.7e-72 276.9 253 58.9
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.9e-72 276.2 266 56.4
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 3.8e-72 275.8 199 68.8
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 8.5e-72 274.6 247 61.1
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 9.4e-71 271.2 195 68.2
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 1.2e-70 270.8 254 61.0
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 1.6e-70 270.4 267 58.1
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 2.1e-70 270.0 272 57.4
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 3.9e-69 265.8 179 71.5
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 5.2e-69 265.4 194 66.5
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 1.1e-68 264.2 233 65.7
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.5e-68 263.8 244 63.1
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.5e-68 263.8 269 61.0
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 2.6e-68 263.1 154 79.2
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 2.6e-68 263.1 179 69.8
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 3.3e-68 262.7 265 63.4
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 3.3e-68 262.7 258 58.1
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 3.3e-68 262.7 193 65.3
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 7.4e-68 261.5 260 58.8
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 9.7e-68 261.2 154 78.6
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 3.7e-67 259.2 179 69.8
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 4.8e-67 258.8 154 77.9
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 1.4e-66 257.3 195 62.1
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 4.1e-66 255.8 269 56.1
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 5.3e-66 255.4 253 55.3
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 7.0e-66 255.0 257 60.3
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 1.6e-65 253.8 267 59.9
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 1.6e-65 253.8 268 60.1
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 4.5e-65 252.3 243 63.4
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 1.0e-64 251.1 260 54.6
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 2.9e-64 249.6 263 60.5
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 8.5e-64 248.1 263 60.1
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 8.5e-64 248.1 166 69.3
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.1e-63 247.7 234 59.4
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 1.1e-63 247.7 166 71.7
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 3.2e-63 246.1 153 75.2
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 7.2e-63 245.0 154 74.0
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.6e-62 243.8 265 58.9
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.6e-62 243.8 295 50.8
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 1.0e-61 241.1 154 72.7
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.0e-61 241.1 260 52.3
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.8e-61 240.4 254 57.9
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 4.0e-61 239.2 191 63.9
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 4.0e-61 239.2 262 58.0
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 1.2e-60 237.7 254 57.9
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 2.0e-60 236.9 191 62.3
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 3.4e-60 236.1 154 70.8
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 7.5e-60 235.0 269 55.8
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 7.5e-60 235.0 269 55.8
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 7.5e-60 235.0 153 71.9
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 2.2e-59 233.4 153 73.2
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 3.7e-59 232.6 200 60.5
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 6.3e-59 231.9 150 72.0
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 1.4e-58 230.7 271 54.6
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 1.8e-58 230.3 153 70.6
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.8e-58 230.3 153 70.6
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 3.1e-58 229.6 271 54.2
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 4.1e-58 229.2 153 71.2
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 7.0e-58 228.4 154 70.8
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 3.8e-56 222.6 182 61.5
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.6e-54 217.2 193 57.0
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 2.7e-49 199.9 119 73.9
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.5e-49 199.5 196 52.6
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 1.0e-48 198.0 257 52.5
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 4.7e-46 189.1 200 47.5
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 4.7e-46 189.1 215 47.0
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 8.9e-45 184.9 125 68.0
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.2e-38 164.5 194 47.9
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.0e-37 161.4 249 41.4
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 3.1e-37 159.8 95 78.9
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.3e-32 144.4 184 46.7
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 3.4e-28 129.8 201 39.3
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 1.7e-27 127.5 79 75.9
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 8.3e-27 125.2 144 43.8
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-21 107.8 205 31.7
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 5.8e-20 102.4 168 44.6
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 3.7e-19 99.8 152 39.5
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 5.4e-18 95.9 57 75.4
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 5.4e-18 95.9 59 72.9
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 2.3e-16 90.5 154 32.5
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.3e-08 63.9 132 31.1
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 6.6e-08 62.4 139 27.3
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 5.6e-07 59.3 161 27.3
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 6.2e-06 55.8 32 75.0


User provided reference genes

Program Settings