Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 8.3e-171 603.6 299 100.0
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 3.0e-152 542.0 297 91.6
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 1.4e-149 533.1 297 88.9
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 7.0e-146 520.8 297 87.2
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 6.8e-141 504.2 293 85.7
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 4.4e-140 501.5 300 83.3
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 9.9e-140 500.4 300 82.7
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 9.2e-138 493.8 301 81.4
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 2.1e-137 492.7 296 81.8
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 2.7e-137 492.3 296 81.8
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 5.6e-135 484.6 302 80.8
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 9.9e-132 473.8 276 81.5
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 1.9e-130 469.5 276 81.2
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 2.7e-129 465.7 278 81.3
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 1.3e-128 463.4 276 81.2
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 5.1e-128 461.5 297 76.1
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 6.6e-128 461.1 297 76.1
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 8.7e-128 460.7 277 80.5
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 2.5e-127 459.1 277 80.9
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 5.6e-127 458.0 297 75.8
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.2e-126 456.8 279 80.6
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 2.1e-126 456.1 295 75.6
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 2.8e-126 455.7 277 77.6
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 6.2e-126 454.5 276 78.6
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 8.1e-126 454.1 296 75.3
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 1.1e-125 453.8 299 75.9
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 1.4e-125 453.4 276 79.7
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 2.4e-125 452.6 295 74.9
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 4.0e-125 451.8 267 81.6
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 4.0e-125 451.8 302 74.2
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 2.6e-124 449.1 277 77.3
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 3.4e-124 448.7 277 77.3
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 9.9e-124 447.2 277 76.9
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 1.7e-123 446.4 297 75.8
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 2.2e-123 446.0 298 73.5
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.9e-123 445.7 279 78.1
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 2.9e-123 445.7 295 75.3
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 4.9e-123 444.9 293 73.0
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 1.4e-122 443.4 280 78.6
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 3.2e-122 442.2 277 78.3
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 2.1e-121 439.5 268 79.5
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 4.6e-121 438.3 278 76.3
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 6.0e-121 438.0 278 76.3
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 7.8e-121 437.6 275 77.1
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 1.0e-120 437.2 278 75.5
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 1.3e-120 436.8 281 76.5
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.7e-120 436.4 280 75.7
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 5.1e-120 434.9 270 80.0
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 4.3e-119 431.8 276 75.0
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 5.6e-119 431.4 315 69.8
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 7.3e-119 431.0 276 73.6
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 7.3e-119 431.0 280 75.4
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 1.6e-118 429.9 287 74.6
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.8e-118 429.1 272 77.2
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 3.6e-118 428.7 276 74.6
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 1.4e-117 426.8 288 71.5
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.4e-117 426.8 256 79.7
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 1.8e-117 426.4 298 69.8
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.8e-117 426.4 267 77.5
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 2.4e-117 426.0 293 70.3
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 4.0e-117 425.2 313 70.3
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.2e-116 423.7 276 72.5
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 3.4e-116 422.2 276 75.0
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 3.4e-116 422.2 286 72.0
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 3.4e-116 422.2 277 73.6
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 9.9e-116 420.6 300 69.3
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 9.9e-116 420.6 296 70.9
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 1.3e-115 420.2 271 76.0
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 1.7e-115 419.9 276 73.2
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.7e-115 419.9 276 73.2
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 4.9e-115 418.3 276 71.4
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 6.4e-115 417.9 271 75.3
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 8.4e-115 417.5 287 72.1
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 1.1e-114 417.2 265 74.7
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 5.4e-114 414.8 278 73.4
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 5.4e-114 414.8 351 63.5
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 3.5e-113 412.1 281 73.0
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 6.0e-113 411.4 283 68.9
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 7.9e-113 411.0 276 72.5
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 7.9e-113 411.0 284 72.5
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 3.0e-112 409.1 290 71.4
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 8.7e-112 407.5 268 75.0
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 4.3e-111 405.2 291 69.8
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 7.4e-111 404.4 296 69.3
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 6.2e-110 401.4 294 68.4
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.1e-109 400.6 283 67.1
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 2.2e-107 392.9 277 68.6
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 3.8e-107 392.1 277 70.8
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 4.9e-107 391.7 276 68.1
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 6.4e-107 391.3 291 68.4
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 1.2e-105 387.1 279 67.0
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 2.1e-105 386.3 257 71.2
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 8.7e-104 380.9 285 66.3
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 1.9e-103 379.8 277 67.9
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.3e-102 377.1 256 72.7
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 6.2e-102 374.8 277 67.5
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 6.9e-101 371.3 277 66.8
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 3.8e-99 365.5 201 89.1
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 5.5e-98 361.7 290 62.8
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 7.1e-98 361.3 277 65.3
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 1.2e-97 360.5 291 61.9
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.2e-97 360.5 262 66.4
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 4.3e-95 352.1 261 66.7
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 4.8e-94 348.6 258 67.4
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 8.2e-94 347.8 249 69.5
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 2.0e-92 343.2 260 65.4
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 8.5e-91 337.8 282 58.2
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 4.2e-90 335.5 248 69.0
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 6.1e-89 331.6 238 70.2
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 5.1e-88 328.6 247 65.2
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.5e-87 327.0 247 63.6
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.0e-83 314.3 273 59.0
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 6.5e-83 311.6 279 62.4
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.4e-82 310.5 269 59.9
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 1.4e-80 303.9 191 76.4
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 5.1e-80 302.0 224 66.1
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 8.8e-80 301.2 189 79.4
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 7.0e-77 291.6 248 59.7
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 1.0e-75 287.7 256 59.4
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 7.7e-68 261.5 219 61.2
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 1.2e-63 247.7 303 44.9
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 9.7e-63 244.6 290 49.3
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 7.0e-61 238.4 247 53.0
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 3.4e-55 219.5 120 85.8
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 1.6e-49 200.7 121 80.2
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 1.5e-47 194.1 293 40.6
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.5e-47 194.1 119 75.6
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 2.3e-43 180.3 257 40.5
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.2e-41 174.5 148 58.8
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 2.0e-39 167.2 88 89.8
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 1.6e-36 157.5 102 78.4
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 4.6e-36 156.0 118 63.6
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-35 153.3 153 54.9
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 3.6e-33 146.4 88 78.4
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 3.9e-27 126.3 91 67.0
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 8.6e-27 125.2 102 64.7
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 5.8e-23 112.5 286 28.3
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 4.9e-22 109.4 86 67.4
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 6.0e-20 102.4 71 69.0
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 1.0e-19 101.7 262 30.5
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 6.6e-19 99.0 295 28.5
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 1.5e-18 97.8 216 28.7
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 2.8e-17 93.6 97 52.6
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 4.0e-16 89.7 204 27.9
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 2.2e-14 84.0 47 85.1
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 3.2e-13 80.1 75 58.7
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 1.2e-12 78.2 310 22.9
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 1.6e-12 77.8 310 22.9
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 1.7e-11 74.3 87 46.0
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 3.9e-11 73.2 54 57.4
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 2.5e-10 70.5 127 34.6
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 1.6e-09 67.8 42 73.8
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 1.1e-08 65.1 233 23.6
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 3.1e-08 63.5 59 61.0
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 1.3e-06 58.2 39 64.1


User provided reference genes

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