Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00135_v3 Cicer arietinum L. HOM05D000343 ORTHO05D009884 2.4e-87 325.5 162 100.0
Psat1g216600 Pisum sativum HOM05D000343 ORTHO05D009884 3.4e-46 188.7 138 73.9
TPR.G25247 Trifolium pratense HOM05D000343 ORTHO05D009884 1.4e-42 176.8 137 72.3
Medtr7g116990 Medicago truncatula HOM05D000343 ORTHO05D009884 8.5e-37 157.5 139 64.7
Glyma.08G179000 Glycine max HOM05D000343 ORTHO05D009884 6.1e-27 124.8 133 60.9
Glyma.15G053500 Glycine max HOM05D000343 ORTHO05D009884 4.0e-26 122.1 101 69.3
arahy.Tifrunner.gnm1.ann1.3SZ8AD Arachis hypogaea HOM05D000343 ORTHO05D009884 2.6e-25 119.4 129 51.2
Lj6g0025417 Lotus japonicus HOM05D000343 ORTHO05D009884 3.3e-25 119.0 134 55.2
arahy.Tifrunner.gnm1.ann1.HQ4SC1 Arachis hypogaea HOM05D000343 ORTHO05D009884 4.4e-25 118.6 129 51.2
VMungo0251G0418 Vigna mungo HOM05D000343 ORTHO05D009884 4.8e-24 115.2 85 69.4
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 8.2e-24 114.4 132 55.3
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 7.0e-23 111.3 132 53.8
MD05G1044800 Malus domestica HOM05D000343 ORTHO05D009884 3.5e-22 109.0 96 63.5
Hma1.2p1_0704F.1_g206650 Hydrangea macrophylla HOM05D000343 ORTHO05D002777 2.2e-21 106.3 76 73.7
MD10G1051800 Malus domestica HOM05D000343 ORTHO05D009884 5.0e-21 105.1 96 62.5
RcHm_v2.0_Chr6g0271811 Rosa chinensis HOM05D000343 ORTHO05D009884 6.5e-21 104.8 95 57.9
TPR.G10457 Trifolium pratense HOM05D000343 ORTHO05D002777 1.1e-20 104.0 76 72.4
Lj9A353G63 Lonicera japonica HOM05D000343 ORTHO05D002777 1.5e-20 103.6 78 67.9
Lalb_Chr10g0097841 Lupinus albus HOM05D000343 ORTHO05D002777 2.5e-20 102.8 76 72.4
Lalb_Chr04g0256521 Lupinus albus HOM05D000343 ORTHO05D009884 3.2e-20 102.4 71 73.2
Prupe.8G060400 Prunus persica HOM05D000343 ORTHO05D002777 4.2e-20 102.1 70 74.3
CSS0044959 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D002777 7.2e-20 101.3 70 72.9
Cpa.g.sc42.57 Carica papaya HOM05D000343 ORTHO05D009884 7.2e-20 101.3 70 72.9
Ca_18353_v3 Cicer arietinum L. HOM05D000343 ORTHO05D002777 7.2e-20 101.3 76 71.1
Glyma.08G072400 Glycine max HOM05D000343 ORTHO05D002777 7.2e-20 101.3 76 69.7
Lj4g0019087 Lotus japonicus HOM05D000343 ORTHO05D002777 7.2e-20 101.3 76 68.4
Nitab4.5_0002576g0010 Nicotiana tabacum HOM05D000343 ORTHO05D002777 7.2e-20 101.3 70 71.4
Potri.001G205400 Populus trichocarpa HOM05D000343 ORTHO05D002777 7.2e-20 101.3 70 72.9
Glyma.05G117300 Glycine max HOM05D000343 ORTHO05D009884 9.4e-20 100.9 70 71.4
Sabra03G0015100 Salix brachista HOM05D000343 ORTHO05D009884 9.4e-20 100.9 70 74.3
COL.COLO4_24941 Corchorus olitorius HOM05D000343 ORTHO05D009884 1.2e-19 100.5 81 64.2
Medtr4g094232 Medicago truncatula HOM05D000343 ORTHO05D002777 1.2e-19 100.5 76 71.1
Phvul.002G208800 Phaseolus vulgaris HOM05D000343 ORTHO05D002777 1.2e-19 100.5 76 68.4
Potri.003G024000 Populus trichocarpa HOM05D000343 ORTHO05D002777 1.2e-19 100.5 70 72.9
vmacro01824 Vaccinium macrocarpon HOM05D000343 ORTHO05D002777 1.2e-19 100.5 77 68.8
CiPaw.05G035500 Carya illinoinensis HOM05D000343 ORTHO05D009884 1.6e-19 100.1 71 71.8
Duzib132G0085 Durio zibethinus HOM05D000343 ORTHO05D002777 1.6e-19 100.1 98 57.1
Oeu000247.4 Olea europaea HOM05D000343 ORTHO05D002777 1.6e-19 100.1 77 68.8
PGR042G3206 Punica granatum HOM05D000343 ORTHO05D002777 1.6e-19 100.1 70 71.4
Ciclev10030175m.g Citrus clementina HOM05D000343 ORTHO05D009884 2.1e-19 99.8 95 57.9
Nn1g05348 Nelumbo nucifera HOM05D000343 ORTHO05D009884 2.1e-19 99.8 91 63.7
Actinidia00268 Actinidia chinensis HOM05D000343 ORTHO05D002777 2.7e-19 99.4 72 70.8
Lalb_Chr18g0060571 Lupinus albus HOM05D000343 ORTHO05D009884 3.6e-19 99.0 135 50.4
Solyc01g105160.4 Solanum lycopersicum HOM05D000343 ORTHO05D002777 3.6e-19 99.0 70 70.0
Sopen01g047700 Solanum pennellii HOM05D000343 ORTHO05D009884 3.6e-19 99.0 70 70.0
PGSC0003DMG400012559 Solanum tuberosum HOM05D000343 ORTHO05D009884 3.6e-19 99.0 70 70.0
TWI59G0918 Tripterygium wilfordii HOM05D000343 ORTHO05D002777 3.6e-19 99.0 70 70.0
Sc22g0003160 Simmondsia chinensis HOM05D000343 ORTHO05D002777 4.7e-19 98.6 70 71.4
Carub.0007s0694 Capsella rubella HOM05D000343 ORTHO05D009884 8.0e-19 97.8 89 58.4
FAN27G2388 Fragaria x ananassa HOM05D000343 ORTHO05D002777 8.0e-19 97.8 100 53.0
PSO210G0964 Papaver somniferum HOM05D000343 ORTHO05D009884 8.0e-19 97.8 70 70.0
Cfa005601 Carpinus fangiana HOM05D000343 ORTHO05D002777 1.0e-18 97.4 70 71.4
FvH4_2g11930 Fragaria vesca HOM05D000343 ORTHO05D002777 1.0e-18 97.4 70 70.0
FAN20G2112 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.0e-18 97.4 70 70.0
FAN24G2206 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.0e-18 97.4 70 70.0
SalBow5G0636 Salvia bowleyana HOM05D000343 ORTHO05D009884 1.0e-18 97.4 72 66.7
SalBow5G2302 Salvia bowleyana HOM05D000343 ORTHO05D009884 1.0e-18 97.4 72 66.7
arahy.Tifrunner.gnm1.ann1.KT5IG2 Arachis hypogaea HOM05D000343 ORTHO05D002777 1.4e-18 97.1 70 68.6
Duzib248G1573 Durio zibethinus HOM05D000343 ORTHO05D009884 1.4e-18 97.1 70 70.0
Manes.06G012600 Manihot esculenta HOM05D000343 ORTHO05D002777 1.4e-18 97.1 70 71.4
QL11p020880 Quercus lobata HOM05D000343 ORTHO05D009884 1.4e-18 97.1 70 71.4
Sed0012395 Sechium edule HOM05D000343 ORTHO05D002777 1.4e-18 97.1 70 70.0
AL7G18020 Arabidopsis lyrata HOM05D000343 ORTHO05D009884 1.8e-18 96.7 70 68.6
AT4G33520 Arabidopsis thaliana HOM05D000343 ORTHO05D002777 1.8e-18 96.7 70 68.6
Lsat_1_v5_gn_9_117160 Lactuca sativa HOM05D000343 ORTHO05D002777 1.8e-18 96.7 70 71.4
Thecc.02G138700 Theobroma cacao HOM05D000343 ORTHO05D002777 1.8e-18 96.7 95 55.8
MSTRG.16584 Avicennia marina HOM05D000343 ORTHO05D009884 2.3e-18 96.3 70 68.6
DCAR_001785 Daucus carota HOM05D000343 ORTHO05D009884 2.3e-18 96.3 87 58.6
FAN15G3294 Fragaria x ananassa HOM05D000343 ORTHO05D002777 3.0e-18 95.9 70 68.6
Gohir.A03G173900 Gossypium hirsutum HOM05D000343 ORTHO05D002777 3.0e-18 95.9 70 70.0
Gohir.D02G197000 Gossypium hirsutum HOM05D000343 ORTHO05D009884 3.0e-18 95.9 70 70.0
Gorai.005G220100 Gossypium raimondii HOM05D000343 ORTHO05D009884 3.0e-18 95.9 70 70.0
TAR628G1020 Trochodendron aralioides HOM05D000343 ORTHO05D002777 3.0e-18 95.9 76 65.8
A01p04740 Brassica napus HOM05D000343 ORTHO05D002777 4.0e-18 95.5 86 58.1
A08p17580 Brassica napus HOM05D000343 ORTHO05D009884 4.0e-18 95.5 89 56.2
BraA08t33711Z Brassica rapa HOM05D000343 ORTHO05D009884 4.0e-18 95.5 89 56.2
Hund00062 Selenicereus undatus HOM05D000343 ORTHO05D002777 4.0e-18 95.5 72 66.7
arahy.Tifrunner.gnm1.ann1.8T0CRQ Arachis hypogaea HOM05D000343 ORTHO05D002777 5.2e-18 95.1 70 67.1
BcaB03g12795 Brassica carinata HOM05D000343 ORTHO05D009884 5.2e-18 95.1 70 67.1
CARHR241620 Cardamine hirsuta HOM05D000343 ORTHO05D009884 5.2e-18 95.1 70 67.1
Oeu007963.1 Olea europaea HOM05D000343 ORTHO05D009884 5.2e-18 95.1 76 68.4
PSO447G0128 Papaver somniferum HOM05D000343 ORTHO05D009884 5.2e-18 95.1 70 68.6
Sp7g31260 Schrenkiella parvula HOM05D000343 ORTHO05D002777 5.2e-18 95.1 70 67.1
BcaC09g52169 Brassica carinata HOM05D000343 ORTHO05D002777 6.8e-18 94.7 70 67.1
Migut.B00610 Erythranthe guttata HOM05D000343 ORTHO05D002777 6.8e-18 94.7 87 58.6
Actinidia23995 Actinidia chinensis HOM05D000343 ORTHO05D002777 8.8e-18 94.4 70 70.0
Aa31sc280G30 Aethionema arabicum HOM05D000343 ORTHO05D002777 8.8e-18 94.4 70 67.1
CAN.G523.72 Capsicum annuum HOM05D000343 ORTHO05D002777 8.8e-18 94.4 70 70.0
Cc02_g21540 Coffea canephora HOM05D000343 ORTHO05D009884 8.8e-18 94.4 70 68.6
Nn5g30120 Nelumbo nucifera HOM05D000343 ORTHO05D002777 8.8e-18 94.4 70 70.0
Atru.chr6.1136 Acer truncatum HOM05D000343 ORTHO05D002777 1.2e-17 94.0 70 68.6
CiPaw.06G153500 Carya illinoinensis HOM05D000343 ORTHO05D002777 1.2e-17 94.0 70 68.6
GSVIVG01038744001 Vitis vinifera HOM05D000343 ORTHO05D009884 1.2e-17 94.0 70 68.6
BolC1t00495H Brassica oleracea HOM05D000343 ORTHO05D002777 1.5e-17 93.6 86 57.0
BraA01t00457Z Brassica rapa HOM05D000343 ORTHO05D002777 1.5e-17 93.6 86 57.0
CANSAT11G1697 Cannabis sativa HOM05D000343 ORTHO05D002777 1.5e-17 93.6 80 61.2
unitig_749.g14153 Utricularia gibba HOM05D000343 ORTHO05D009884 2.0e-17 93.2 70 65.7
EL10Ac9g21477 Beta vulgaris HOM05D000343 ORTHO05D002777 2.6e-17 92.8 70 67.1
ECA236G2887 Erigeron canadensis HOM05D000343 ORTHO05D009884 3.4e-17 92.4 70 70.0
BcaC01g00987 Brassica carinata HOM05D000343 ORTHO05D009884 4.4e-17 92.0 70 65.7
C03p86570 Brassica napus HOM05D000343 ORTHO05D009884 4.4e-17 92.0 70 65.7
BolC3t20951H Brassica oleracea HOM05D000343 ORTHO05D009884 4.4e-17 92.0 70 65.7
ECA240G1089 Erigeron canadensis HOM05D000343 ORTHO05D002777 4.4e-17 92.0 70 67.1
MBI05_g19354_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D009884 4.4e-17 92.0 72 65.3
Sed0024706 Sechium edule HOM05D000343 ORTHO05D009884 4.4e-17 92.0 86 55.8
Aqoxy6G00797 Aquilegia oxysepala HOM05D000343 ORTHO05D002777 5.7e-17 91.7 70 67.1
CDE05G0554 Ceratophyllum demersum HOM05D000391 ORTHO05D000293 5.7e-17 91.7 136 43.4
CsaV3_4G009440 Cucumis sativus L. HOM05D000343 ORTHO05D002777 5.7e-17 91.7 70 68.6
Eucgr.G00769 Eucalyptus grandis HOM05D000343 ORTHO05D002777 5.7e-17 91.7 72 65.3
THA.LOC104804410 Tarenaya hassleriana HOM05D000343 ORTHO05D002777 5.7e-17 91.7 70 64.3
ClCG09G015420 Citrullus lanatus HOM05D000343 ORTHO05D009884 7.5e-17 91.3 72 61.1
MELO3C019011.2 Cucumis melo HOM05D000343 ORTHO05D002777 7.5e-17 91.3 70 68.6
HanXRQChr03g0066901 Helianthus annuus HOM05D000343 ORTHO05D002777 7.5e-17 91.3 70 67.1
Ah.01g022360 Amaranthus hybridus HOM05D000343 ORTHO05D002777 9.8e-17 90.9 70 64.3
Gohir.A04G113600 Gossypium hirsutum HOM05D000343 ORTHO05D009884 9.8e-17 90.9 71 66.2
CsaV3_7G006490 Cucumis sativus L. HOM05D000343 ORTHO05D009884 1.3e-16 90.5 72 61.1
ClCG10G009250 Citrullus lanatus HOM05D000343 ORTHO05D002777 1.7e-16 90.1 70 68.6
MELO3C018643.2 Cucumis melo HOM05D000343 ORTHO05D009884 1.7e-16 90.1 70 62.9
Oeu036419.1 Olea europaea HOM05D000343 ORTHO05D009884 1.7e-16 90.1 76 63.2
PSO781G0273 Papaver somniferum HOM05D000343 ORTHO05D002777 1.7e-16 90.1 76 64.5
Eucgr.L00482 Eucalyptus grandis HOM05D000343 ORTHO05D009884 2.2e-16 89.7 96 51.0
Gorai.012G142100 Gossypium raimondii HOM05D000343 ORTHO05D009884 2.2e-16 89.7 71 64.8
SGA_v2.0_scaffold14G07121 Striga asiatica HOM05D000343 ORTHO05D002777 2.8e-16 89.4 76 61.8
TAR376G1172 Trochodendron aralioides HOM05D000343 ORTHO05D009884 2.8e-16 89.4 73 63.0
ATR0118G027 Amborella trichopoda HOM05D000343 ORTHO05D002777 3.7e-16 89.0 72 63.9
C01p05150 Brassica napus HOM05D000343 ORTHO05D002777 3.7e-16 89.0 86 55.8
Lsat_1_v5_gn_7_80921 Lactuca sativa HOM05D000343 ORTHO05D009884 6.3e-16 88.2 70 62.9
Gohir.D04G154900 Gossypium hirsutum HOM05D000343 ORTHO05D009884 8.3e-16 87.8 70 64.3
MBI02_g08720_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D002777 1.1e-15 87.4 70 65.7
AUR62010134 Chenopodium quinoa HOM05D000343 ORTHO05D002777 1.4e-15 87.0 70 62.9
AUR62013126 Chenopodium quinoa HOM05D000343 ORTHO05D002777 1.8e-15 86.7 70 61.4
PSO541G1663 Papaver somniferum HOM05D000343 ORTHO05D002777 1.8e-15 86.7 76 63.2
HanXRQChr13g0420711 Helianthus annuus HOM05D000343 ORTHO05D009884 3.1e-15 85.9 82 56.1
Zm00001eb199150 Zea mays HOM05D000343 ORTHO05D002777 4.1e-15 85.5 70 62.9
Os07g0623200 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D009884 5.4e-15 85.1 72 61.1
Rhsim11G0136600 Rhododendron simsii HOM05D000343 ORTHO05D002777 7.0e-15 84.7 88 55.7
CDE10G0761 Ceratophyllum demersum HOM05D000343 ORTHO05D009884 9.1e-15 84.3 70 62.9
HPP92_002330 Vanilla planifolia HOM05D000343 ORTHO05D002777 9.1e-15 84.3 76 61.8
CDE12G0847 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 1.2e-14 84.0 70 62.9
HanXRQChr11g0338131 Helianthus annuus HOM05D000343 ORTHO05D009884 3.5e-14 82.4 72 58.3
Hund06383 Selenicereus undatus HOM05D000343 ORTHO05D009884 4.5e-14 82.0 89 49.4
Pp3c22_10860 Physcomitrium patens HOM05D000343 ORTHO05D002777 1.3e-13 80.5 76 60.5
Zm00001eb327860 Zea mays HOM05D000343 ORTHO05D009884 1.3e-13 80.5 72 58.3
Os03g0388100 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D009884 1.7e-13 80.1 79 55.7
Zm00001eb392420 Zea mays HOM05D000343 ORTHO05D009884 1.7e-13 80.1 77 57.1
SMO011G0027 Selaginella moellendorffii HOM05D000343 ORTHO05D002777 2.9e-13 79.3 101 47.5
AagrBONN_evm.TU.Sc2ySwM_117.4043 Anthoceros agrestis HOM05D000208 ORTHO05D000130 6.5e-13 78.2 72 58.3
Mapoly0071s0034 Marchantia polymorpha HOM05D000343 ORTHO05D002777 8.5e-13 77.8 87 50.6
Eucgr.L00219 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.1e-12 77.4 78 57.7
Eucgr.L00476 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.5e-12 77.0 65 58.5
HPP92_019306 Vanilla planifolia HOM05D000343 ORTHO05D009884 1.5e-12 77.0 67 64.2
CBR_g20392 Chara braunii HOM05D000343 ORTHO05D002777 9.5e-12 74.3 84 53.6
Eucgr.L00195 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.6e-11 73.6 79 51.9
Pp3c18_10710 Physcomitrium patens HOM05D000343 ORTHO05D002777 1.6e-11 73.6 84 51.2
CSS0022587 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D009884 3.6e-11 72.4 55 67.3
Thhalv10024339m.g Eutrema salsugineum HOM05D000343 ORTHO05D002777 3.6e-11 72.4 57 64.9
Peaxi162Scf00001g00124 Petunia axillaris HOM05D000343 ORTHO05D009884 6.1e-11 71.6 66 56.1
Eucgr.L00173 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.0e-10 70.9 75 56.0
arahy.Tifrunner.gnm1.ann1.A40AQH Arachis hypogaea HOM05D000343 ORTHO05D002777 1.8e-10 70.1 99 47.5
Pp3c19_14990 Physcomitrium patens HOM05D000343 ORTHO05D009884 1.8e-10 70.1 86 47.7
Peaxi162Scf00152g01020 Petunia axillaris HOM05D000343 ORTHO05D009884 5.2e-10 68.6 57 59.6
Eucgr.G00674 Eucalyptus grandis HOM05D000343 ORTHO05D009884 8.8e-10 67.8 51 66.7
Eucgr.L00481 Eucalyptus grandis HOM05D000343 ORTHO05D009884 6.3e-08 61.6 58 56.9
SEGI_22608 Sequoiadendron giganteum HOM05D000343 ORTHO05D002777 1.8e-07 60.1 53 56.6
Cpa.g.sc126.19 Carica papaya HOM05D000343 ORTHO05D002777 2.0e-06 56.6 71 43.7
CDE07G1800 Ceratophyllum demersum HOM05D000343 ORTHO05D009884 3.5e-06 55.8 86 37.2
Cre10.g424775 Chlamydomonas reinhardtii HOM05D000343 ORTHO05D002777 4.5e-06 55.5 87 43.7
Eucgr.G00759 Eucalyptus grandis HOM05D000343 ORTHO05D009884 4.5e-06 55.5 48 64.6
Eucgr.L00310 Eucalyptus grandis HOM05D000343 ORTHO05D009884 4.5e-06 55.5 48 64.6
CDE06G1102 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 7.7e-06 54.7 72 43.1
Gohir.A06G083200 Gossypium hirsutum HOM05D000343 ORTHO05D002777 7.7e-06 54.7 85 35.3


User provided reference genes

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