Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 0.0e+00 1099.7 577 100.0
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 0.0e+00 1099.7 577 100.0
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 2.8e-223 778.9 574 71.8
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 5.2e-222 774.6 570 71.1
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.4e-203 713.4 578 66.8
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 9.9e-197 690.6 578 64.9
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 1.5e-189 666.8 560 65.4
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 6.0e-178 628.2 556 62.1
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 2.5e-176 622.9 566 60.6
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 2.7e-170 602.8 577 58.2
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 1.1e-166 590.9 547 59.6
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 5.5e-163 578.6 579 56.0
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 2.7e-162 576.2 459 68.0
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 3.0e-161 572.8 576 54.3
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 1.1e-160 570.9 583 56.4
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 4.1e-158 562.4 569 55.0
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 7.7e-157 558.1 581 54.7
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 1.3e-156 557.4 581 54.6
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 6.5e-156 555.1 583 55.2
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 1.5e-152 543.9 456 65.8
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 3.7e-151 539.3 590 53.1
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 3.7e-151 539.3 570 52.5
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.8e-151 538.9 573 53.4
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 3.1e-150 536.2 572 51.2
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.3e-148 530.8 578 51.7
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 5.0e-148 528.9 568 52.5
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.6e-146 523.9 560 51.6
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 4.7e-146 522.3 571 50.6
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 4.0e-145 519.2 568 49.6
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 4.0e-145 519.2 565 49.9
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.7e-143 513.8 575 51.0
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.1e-142 511.1 567 49.7
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.2e-141 507.7 543 52.9
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.9e-141 505.4 571 51.3
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 7.7e-141 505.0 567 49.4
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.5e-139 500.0 562 49.1
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.5e-139 500.0 565 48.5
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 1.2e-138 497.7 597 48.4
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 2.1e-138 496.9 572 51.7
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.6e-138 496.1 562 48.0
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.8e-137 493.8 563 49.6
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 6.8e-137 491.9 538 48.9
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 8.8e-137 491.5 575 47.8
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 2.0e-136 490.3 574 48.4
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 4.1e-134 482.6 554 48.6
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 1.2e-133 481.1 555 47.9
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.6e-133 480.7 575 47.7
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.6e-133 480.7 575 47.8
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 4.5e-133 479.2 581 47.2
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 4.5e-133 479.2 521 50.3
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.7e-132 477.2 575 47.7
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 9.5e-131 471.5 560 48.0
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.2e-130 471.1 569 46.0
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.6e-130 470.7 575 47.0
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 2.8e-130 469.9 558 49.1
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 1.2e-128 464.5 583 46.1
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.0e-128 463.8 559 47.6
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 2.0e-128 463.8 558 48.4
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 4.4e-128 462.6 588 46.3
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 7.5e-128 461.8 636 43.1
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 1.3e-127 461.1 571 45.5
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 1.7e-127 460.7 601 46.6
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 1.7e-127 460.7 571 46.2
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 2.2e-127 460.3 566 46.5
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 5.4e-126 455.7 576 45.0
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.0e-126 455.3 573 45.5
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.0e-125 453.8 567 45.0
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 2.0e-125 453.8 578 44.5
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.3e-124 451.1 569 45.7
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 3.8e-124 449.5 548 44.5
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 5.0e-124 449.1 540 46.7
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 6.6e-124 448.7 573 46.8
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 8.6e-124 448.4 545 46.2
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.5e-123 446.8 572 45.6
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 2.1e-122 443.7 540 45.9
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 1.4e-121 441.0 540 47.2
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 3.0e-121 439.9 453 53.4
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 4.4e-120 436.0 596 45.0
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.7e-119 434.1 542 45.2
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 2.9e-119 433.3 542 44.5
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 2.9e-119 433.3 588 45.6
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 2.3e-116 423.7 582 42.6
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 3.0e-116 423.3 468 52.4
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 3.9e-116 422.9 547 43.9
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 3.9e-116 422.9 562 45.9
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.1e-115 421.4 541 44.2
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 1.5e-115 421.0 561 43.3
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.5e-115 421.0 578 43.6
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 1.9e-115 420.6 561 43.3
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 4.3e-115 419.5 576 43.4
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 2.1e-114 417.2 561 42.6
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 4.7e-114 416.0 540 43.1
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 6.2e-114 415.6 561 42.4
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 1.1e-113 414.8 561 42.8
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.3e-113 413.7 573 42.9
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 8.9e-113 411.8 534 43.6
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 9.8e-112 408.3 572 43.4
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 6.4e-111 405.6 606 43.1
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 8.3e-111 405.2 576 42.0
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 1.9e-110 404.1 540 40.7
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.6e-109 401.0 457 49.9
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 3.5e-109 399.8 539 42.5
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 1.0e-108 398.3 560 41.1
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 1.5e-107 394.4 554 42.4
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.2e-106 391.3 389 52.4
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 2.8e-106 390.2 541 42.3
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 8.3e-103 378.6 531 42.2
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 4.1e-102 376.3 561 40.8
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.1e-102 376.3 363 55.4
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 5.4e-102 375.9 570 41.4
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 5.1e-100 369.4 534 41.6
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 3.3e-99 366.7 543 41.3
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 1.8e-97 360.9 508 41.3
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 2.6e-96 357.1 566 38.2
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 7.6e-96 355.5 578 39.3
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 1.4e-94 351.3 578 38.9
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 5.4e-94 349.4 578 38.4
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 7.1e-94 349.0 454 44.9
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 3.5e-93 346.7 553 38.2
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 2.5e-91 340.5 568 38.4
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 5.3e-89 332.8 425 44.9
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 8.4e-87 325.5 272 62.9
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 6.0e-85 319.3 464 42.5
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 3.0e-84 317.0 263 62.7
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 1.9e-83 314.3 372 48.4
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 5.3e-73 279.6 534 35.2
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.8e-68 264.6 539 33.6
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 5.1e-68 263.1 392 37.8
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.8e-63 246.9 250 51.6
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.9e-63 246.5 331 45.0
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.2e-58 231.1 447 35.6
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.7e-47 194.9 250 48.8
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.5e-46 191.0 249 39.8
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 9.4e-46 189.1 319 35.7
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 7.0e-41 172.9 159 60.4
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.6e-40 171.0 247 42.5
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 4.5e-40 170.2 566 27.0
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.9e-40 169.9 159 59.1
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 5.5e-38 163.3 363 31.4
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 6.1e-37 159.8 161 46.0
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 1.8e-36 158.3 145 58.6
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 4.8e-34 150.2 569 25.1
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 2.4e-33 147.9 417 28.8
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 1.3e-31 142.1 155 50.3
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.2e-31 141.4 161 48.4
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 1.8e-28 131.7 509 25.1
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.5e-27 128.6 143 45.5
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 8.3e-26 122.9 148 43.2
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 2.0e-24 118.2 544 23.9
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 3.5e-24 117.5 162 42.6
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 1.7e-23 115.2 156 40.4
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 3.8e-23 114.0 174 39.7
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.5e-22 112.1 119 49.6
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.5e-22 111.3 111 54.1
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 9.4e-22 109.4 576 23.4
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.1e-21 108.2 105 49.5
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.1e-21 108.2 172 33.7
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.0e-20 104.4 152 39.5
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 4.0e-20 104.0 95 60.0
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 4.4e-19 100.5 74 62.2
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 7.5e-19 99.8 123 48.0
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 1.3e-18 99.0 134 41.0
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 6.3e-18 96.7 124 41.9
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 8.3e-18 96.3 207 33.8
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 7.7e-16 89.7 73 57.5
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.5e-14 84.7 537 22.5
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.5e-14 83.6 94 46.8
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 7.2e-14 83.2 118 37.3
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 7.2e-14 83.2 116 49.1
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.0e-12 79.3 75 58.7
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 8.9e-12 76.3 81 49.4
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.2e-10 71.6 129 31.0
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 8.3e-10 69.7 62 53.2
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 8.3e-10 69.7 62 53.2
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.2e-09 67.8 55 58.2
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 5.4e-09 67.0 120 37.5
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 2.0e-08 65.1 84 38.1
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.3e-07 61.6 67 49.3
arahy.Tifrunner.gnm1.ann1.7PH810 Arachis hypogaea HOM05D003578 ORTHO05D004021 6.6e-07 60.1 102 42.2


User provided reference genes

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