Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 3.0e-137 491.9 259 100.0
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 3.0e-137 491.9 259 100.0
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 7.9e-77 291.2 263 69.6
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 3.7e-74 282.3 264 67.4
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 6.2e-74 281.6 266 67.7
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 8.2e-58 228.0 259 58.3
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 2.6e-56 223.0 280 53.2
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 5.0e-55 218.8 265 54.3
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 5.0e-55 218.8 265 54.3
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 2.7e-53 213.0 254 54.7
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 9.7e-51 204.5 257 53.3
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 1.4e-49 200.7 267 49.4
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 2.4e-49 199.9 267 50.2
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 4.1e-49 199.1 269 50.9
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 2.6e-48 196.4 268 49.3
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 3.4e-48 196.1 272 47.8
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.7e-47 193.7 252 50.8
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 3.8e-47 192.6 269 48.3
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 5.0e-47 192.2 273 48.7
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 7.2e-46 188.3 268 48.9
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 1.6e-45 187.2 241 51.5
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 4.7e-45 185.7 267 47.6
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 7.9e-45 184.9 270 47.4
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.4e-44 184.1 309 44.0
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 1.4e-44 184.1 268 49.3
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.8e-44 183.7 269 47.2
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 1.8e-44 183.7 268 49.3
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 2.3e-44 183.3 258 50.0
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 2.3e-44 183.3 267 49.1
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.9e-44 182.6 249 49.0
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 6.7e-44 181.8 248 48.4
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 1.1e-43 181.0 248 48.8
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.1e-43 181.0 248 48.4
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.5e-43 180.6 269 46.8
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 2.0e-43 180.3 263 48.3
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 2.6e-43 179.9 252 47.6
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 3.3e-43 179.5 267 47.2
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 3.3e-43 179.5 260 49.6
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 3.3e-43 179.5 253 49.0
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 7.4e-43 178.3 273 46.5
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 9.7e-43 177.9 258 46.1
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 1.3e-42 177.6 268 47.0
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.7e-42 177.2 264 45.8
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 3.7e-42 176.0 264 45.5
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 4.8e-42 175.6 248 48.8
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 6.3e-42 175.3 265 45.7
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 1.1e-41 174.5 241 47.3
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.4e-41 174.1 257 47.1
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 5.3e-41 172.2 266 47.7
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 2.6e-40 169.9 272 45.2
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 4.5e-40 169.1 276 45.3
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 5.9e-40 168.7 246 47.6
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.3e-39 167.5 249 48.2
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 3.8e-39 166.0 271 44.6
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 5.0e-39 165.6 263 44.9
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 6.5e-39 165.2 265 44.9
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 8.5e-39 164.9 234 47.0
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 8.5e-39 164.9 258 44.6
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 1.1e-38 164.5 258 45.7
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 7.2e-38 161.8 264 45.1
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 9.4e-38 161.4 267 45.7
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 9.4e-38 161.4 251 45.4
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 1.2e-37 161.0 271 42.4
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 1.6e-37 160.6 250 44.4
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.6e-37 160.6 243 45.7
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 1.6e-37 160.6 247 47.8
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 3.6e-37 159.5 266 44.7
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 3.6e-37 159.5 282 42.6
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 4.7e-37 159.1 268 45.1
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 8.0e-37 158.3 262 46.9
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 1.0e-36 157.9 267 44.9
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 1.0e-36 157.9 286 43.0
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 1.8e-36 157.1 253 44.3
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 3.9e-36 156.0 263 45.2
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 3.9e-36 156.0 246 43.9
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 3.9e-36 156.0 248 46.8
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 8.8e-36 154.8 260 43.5
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.5e-35 154.1 241 43.2
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 2.6e-35 153.3 253 42.7
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 3.3e-35 152.9 265 43.8
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 5.7e-35 152.1 260 44.2
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 1.3e-34 151.0 302 40.7
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 1.7e-34 150.6 269 41.3
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 6.3e-34 148.7 261 44.1
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 8.2e-34 148.3 260 41.9
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 1.1e-33 147.9 265 42.3
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 2.4e-33 146.7 260 43.5
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 3.1e-33 146.4 266 41.0
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 4.1e-33 146.0 258 43.4
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 9.1e-33 144.8 260 43.1
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 9.1e-33 144.8 260 43.1
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.6e-32 144.1 176 51.7
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.6e-32 144.1 176 51.7
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 1.6e-32 144.1 263 43.0
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 2.0e-32 143.7 238 43.3
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 3.5e-32 142.9 248 42.3
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 4.5e-32 142.5 251 44.6
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.7e-31 140.6 162 55.6
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.7e-31 140.6 261 41.8
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 1.5e-30 137.5 253 41.5
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 2.5e-30 136.7 248 42.3
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 7.2e-30 135.2 264 43.2
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 1.6e-29 134.0 260 41.5
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 2.1e-29 133.7 165 50.9
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 6.1e-29 132.1 248 41.5
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 2.3e-28 130.2 267 39.7
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 2.3e-28 130.2 267 39.7
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 8.8e-28 128.3 241 41.5
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 8.8e-28 128.3 350 33.7
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 1.2e-27 127.9 267 39.3
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 1.2e-27 127.9 267 39.3
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 1.2e-27 127.9 267 39.3
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.0e-27 127.1 261 40.6
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 5.7e-27 125.6 266 37.6
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 8.3e-26 121.7 256 38.3
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 4.1e-25 119.4 264 39.0
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 5.3e-25 119.0 149 53.0
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 1.6e-24 117.5 203 44.8
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 7.7e-24 115.2 250 38.4
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.7e-23 114.0 209 42.1
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 3.8e-23 112.8 246 36.2
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 3.8e-23 112.8 246 36.2
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 7.2e-22 108.6 192 42.2
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 1.6e-21 107.5 257 35.8
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 3.6e-21 106.3 242 37.6
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 5.7e-19 99.0 81 66.7
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 2.2e-18 97.1 332 32.2
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 2.2e-18 97.1 257 32.7
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 2.7e-16 90.1 171 39.8
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 1.0e-15 88.2 247 34.4
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.1e-14 84.7 242 35.5
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 1.6e-13 80.9 183 38.8
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 4.7e-13 79.3 209 37.3
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 1.7e-10 70.9 76 56.6
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 4.1e-09 66.2 67 56.7
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 5.4e-09 65.9 91 47.3
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 5.4e-09 65.9 251 30.7
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 9.2e-09 65.1 67 56.7
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 3.5e-08 63.2 164 38.4
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.9e-07 60.1 236 28.4


User provided reference genes

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