Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 6.3e-105 384.0 184 100.0
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 1.2e-95 353.2 184 94.6
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 4.2e-32 142.1 159 54.7
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 2.1e-31 139.8 159 53.5
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 2.1e-31 139.8 159 53.5
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 3.5e-31 139.0 147 55.8
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 4.6e-31 138.7 147 56.5
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 1.0e-30 137.5 159 52.2
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 1.3e-30 137.1 159 52.8
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 6.7e-30 134.8 159 52.2
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 1.1e-29 134.0 147 55.1
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 1.5e-29 133.7 147 54.4
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 1.5e-29 133.7 159 51.6
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 2.5e-29 132.9 159 51.6
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.5e-29 132.9 159 51.6
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.5e-29 132.9 159 51.6
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 3.3e-29 132.5 159 51.6
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 3.3e-29 132.5 159 51.6
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 4.3e-29 132.1 159 50.9
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 7.4e-29 131.3 159 51.6
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 7.4e-29 131.3 159 50.9
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 7.4e-29 131.3 146 54.1
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 1.3e-28 130.6 146 54.1
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 1.3e-28 130.6 156 51.3
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 1.6e-28 130.2 147 53.1
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 2.2e-28 129.8 159 50.9
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 4.8e-28 128.6 148 52.7
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 8.2e-28 127.9 154 50.6
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.8e-27 126.7 159 49.7
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 2.4e-27 126.3 147 52.4
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 2.4e-27 126.3 150 51.3
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 2.4e-27 126.3 147 53.1
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 3.1e-27 125.9 159 50.3
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 3.1e-27 125.9 152 52.0
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 3.1e-27 125.9 147 52.4
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 4.1e-27 125.6 159 49.1
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 4.1e-27 125.6 155 49.7
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 5.3e-27 125.2 147 51.7
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 6.9e-27 124.8 152 51.3
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 6.9e-27 124.8 159 49.1
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 1.2e-26 124.0 155 49.0
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 1.2e-26 124.0 152 51.3
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 1.5e-26 123.6 147 50.3
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 2.0e-26 123.2 150 50.7
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 2.0e-26 123.2 150 50.7
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 2.0e-26 123.2 159 49.1
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 2.0e-26 123.2 150 48.7
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 3.4e-26 122.5 147 51.0
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 3.4e-26 122.5 152 50.7
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 3.4e-26 122.5 150 49.3
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 4.5e-26 122.1 152 49.3
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 4.5e-26 122.1 148 51.4
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 4.5e-26 122.1 148 51.4
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 5.9e-26 121.7 147 51.0
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 7.7e-26 121.3 140 52.1
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 1.0e-25 120.9 140 51.4
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 1.3e-25 120.6 140 50.0
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 1.7e-25 120.2 147 50.3
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.7e-25 120.2 152 48.0
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 2.2e-25 119.8 152 48.0
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 2.9e-25 119.4 154 47.4
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 2.9e-25 119.4 152 49.3
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 3.8e-25 119.0 153 47.7
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 3.8e-25 119.0 140 50.7
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 5.0e-25 118.6 139 51.1
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 5.0e-25 118.6 159 47.8
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 6.5e-25 118.2 148 48.0
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 6.5e-25 118.2 148 48.0
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 6.5e-25 118.2 148 48.0
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 8.5e-25 117.9 159 47.8
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 8.5e-25 117.9 140 50.7
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 1.1e-24 117.5 140 49.3
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 2.5e-24 116.3 148 47.3
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 2.5e-24 116.3 148 47.3
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 3.2e-24 115.9 148 50.0
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 3.2e-24 115.9 159 47.2
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 5.5e-24 115.2 150 48.7
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 5.5e-24 115.2 146 48.6
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 7.2e-24 114.8 159 45.3
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 2.1e-23 113.2 147 46.3
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 4.6e-23 112.1 155 45.8
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 1.0e-22 110.9 152 48.7
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 1.0e-22 110.9 146 45.9
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 3.9e-22 109.0 159 44.7
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 3.3e-21 105.9 137 47.4
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 3.3e-21 105.9 137 47.4
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 9.7e-21 104.4 152 42.1
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 1.7e-20 103.6 152 43.4
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 2.2e-20 103.2 139 45.3
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 2.0e-18 96.7 129 48.1
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.0e-17 94.4 88 59.1
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 1.7e-17 93.6 127 46.5
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 5.0e-17 92.0 61 75.4
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 9.4e-16 87.8 139 40.3
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.8e-14 83.6 70 64.3
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 8.8e-14 81.3 123 42.3
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 1.4e-11 73.9 138 35.5
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 9.1e-11 71.2 46 78.3
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.6e-10 70.5 137 32.1
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.6e-10 70.5 137 34.3
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 2.0e-10 70.1 49 73.5
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 2.0e-10 70.1 121 39.7
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 2.6e-10 69.7 137 31.4
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 3.5e-10 69.3 159 35.2
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 3.5e-10 69.3 137 33.6
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 1.8e-06 57.0 60 53.3
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 3.0e-06 56.2 45 57.8
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 5.2e-06 55.5 48 62.5
Duzib268G0722 Durio zibethinus HOM05D006539 ORTHO05D186223 8.8e-06 54.7 34 79.4


User provided reference genes

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