Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050408 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 9.4e-207 723.4 391 100.0
CSS0007493 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 3.4e-180 635.2 391 88.0
Rhsim13G0062500 Rhododendron simsii HOM05D006271 ORTHO05D008237 8.7e-120 434.5 375 70.1
Actinidia23186 Actinidia chinensis HOM05D006271 ORTHO05D008237 1.9e-98 363.6 354 62.1
Hma1.2p1_0613F.1_g189190 Hydrangea macrophylla HOM05D006271 ORTHO05D008237 9.3e-98 361.3 383 61.9
GSVIVG01024608001 Vitis vinifera HOM05D006271 ORTHO05D008237 1.7e-91 340.5 289 66.4
Nitab4.5_0003270g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 1.4e-90 337.4 374 54.8
CSS0039557 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 1.6e-89 334.0 374 58.6
TAR369G0029 Trochodendron aralioides HOM05D006271 ORTHO05D008237 4.6e-89 332.4 355 57.7
TAR633G1937 Trochodendron aralioides HOM05D006271 ORTHO05D008237 6.1e-89 332.0 311 60.5
Nitab4.5_0002768g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 2.3e-88 330.1 383 53.3
DCAR_018792 Daucus carota HOM05D006271 ORTHO05D008237 1.7e-86 323.9 288 60.8
Sopen06g033780 Solanum pennellii HOM05D006271 ORTHO05D008237 2.0e-84 317.0 295 60.7
HanXRQChr08g0228551 Helianthus annuus HOM05D006271 ORTHO05D008237 1.3e-83 314.3 296 62.2
CiPaw.13G067000 Carya illinoinensis HOM05D006271 ORTHO05D008237 1.7e-83 313.9 386 54.9
Oeu032478.1 Olea europaea HOM05D006271 ORTHO05D008237 3.8e-83 312.8 309 58.3
Lsat_1_v5_gn_9_14460 Lactuca sativa HOM05D006271 ORTHO05D008237 8.5e-83 311.6 290 58.6
PGSC0003DMG400030380 Solanum tuberosum HOM05D006271 ORTHO05D008237 2.5e-82 310.1 377 51.2
Cfa011797 Carpinus fangiana HOM05D006271 ORTHO05D008237 1.6e-81 307.4 301 60.8
Haze_24435 Corylus avellana HOM05D006271 ORTHO05D008237 2.3e-80 303.5 298 59.4
Cc01_g15040 Coffea canephora HOM05D006271 ORTHO05D008237 1.5e-79 300.8 300 58.3
vmacro02904 Vaccinium macrocarpon HOM05D006271 ORTHO05D008237 7.4e-79 298.5 302 58.6
Dinv12252 Davidia involucrata HOM05D006271 ORTHO05D008237 9.7e-79 298.1 224 72.8
Cpa.g.c32708 Carica papaya HOM05D006271 ORTHO05D008237 2.4e-77 293.5 278 61.2
PGR004G1333 Punica granatum HOM05D006271 ORTHO05D008237 3.1e-77 293.1 276 60.5
MD03G1058300 Malus domestica HOM05D006271 ORTHO05D008237 7.0e-77 292.0 306 55.2
CAN.G1095.29 Capsicum annuum HOM05D006271 ORTHO05D008237 9.1e-77 291.6 294 57.8
Glyma.19G024000 Glycine max HOM05D006271 ORTHO05D008237 1.6e-76 290.8 368 52.4
Ciclev10001595m.g Citrus clementina HOM05D006271 ORTHO05D008237 2.0e-76 290.4 398 49.5
ClCG08G003170 Citrullus lanatus HOM05D006271 ORTHO05D008237 2.6e-76 290.0 374 52.7
RcHm_v2.0_Chr6g0268191 Rosa chinensis HOM05D006271 ORTHO05D008237 4.5e-76 289.3 295 55.6
Aqoxy4G02154 Aquilegia oxysepala HOM05D006271 ORTHO05D008237 1.0e-75 288.1 291 56.4
TWI79G1094 Tripterygium wilfordii HOM05D006271 ORTHO05D008237 1.3e-75 287.7 292 56.5
Eucgr.K01366 Eucalyptus grandis HOM05D006271 ORTHO05D008237 3.8e-75 286.2 276 58.0
Sc21g0004890 Simmondsia chinensis HOM05D006271 ORTHO05D008237 3.8e-75 286.2 293 56.7
ECA247G1693 Erigeron canadensis HOM05D006271 ORTHO05D008237 5.0e-75 285.8 278 59.7
CsaV3_7G022840 Cucumis sativus L. HOM05D006271 ORTHO05D008237 8.5e-75 285.0 379 54.4
Atru.chr5.2170 Acer truncatum HOM05D006271 ORTHO05D008237 1.9e-74 283.9 281 59.1
arahy.Tifrunner.gnm1.ann1.0DE1FL Arachis hypogaea HOM05D006271 ORTHO05D008237 1.2e-73 281.2 376 55.1
FAN13G0829 Fragaria x ananassa HOM05D006271 ORTHO05D008237 2.1e-73 280.4 292 54.5
Duzib168G1576 Durio zibethinus HOM05D006271 ORTHO05D008237 3.6e-73 279.6 367 53.7
FAN18G4385 Fragaria x ananassa HOM05D006271 ORTHO05D008237 8.0e-73 278.5 292 54.1
MD11G1060500 Malus domestica HOM05D006271 ORTHO05D008237 8.0e-73 278.5 369 53.7
PSO170G5827 Papaver somniferum HOM05D006271 ORTHO05D008237 1.0e-72 278.1 290 53.4
Medtr7g033700 Medicago truncatula HOM05D006271 ORTHO05D008237 1.8e-72 277.3 378 48.4
arahy.Tifrunner.gnm1.ann1.4PY88X Arachis hypogaea HOM05D006271 ORTHO05D008237 4.0e-72 276.2 373 53.9
SGA_v2.0_scaffold77G25374 Striga asiatica HOM05D006271 ORTHO05D008237 1.1e-71 274.6 252 58.7
PSO017G5241 Papaver somniferum HOM05D006271 ORTHO05D008237 7.5e-71 271.9 296 52.7
THA.LOC104800763 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 1.3e-70 271.2 280 54.6
FAN04G1993 Fragaria x ananassa HOM05D006271 ORTHO05D008237 4.8e-70 269.2 321 50.5
Ca_26670_v3 Cicer arietinum L. HOM05D006271 ORTHO05D008237 6.3e-70 268.9 380 50.0
MBI15_g26246_MAGBIO Magnolia biondii HOM05D006271 ORTHO05D008237 1.4e-69 267.7 288 54.5
Hund18965 Selenicereus undatus HOM05D006271 ORTHO05D008237 3.1e-69 266.5 290 55.2
CANSAT11G2184 Cannabis sativa HOM05D006271 ORTHO05D008237 9.1e-69 265.0 285 55.8
Sed0013584 Sechium edule HOM05D006271 ORTHO05D008237 9.1e-69 265.0 284 56.7
Prupe.6G045300 Prunus persica HOM05D006271 ORTHO05D008237 1.2e-68 264.6 374 52.9
SalBow2G1290 Salvia bowleyana HOM05D006271 ORTHO05D008237 1.6e-68 264.2 333 47.1
Psat6g224880 Pisum sativum HOM05D006271 ORTHO05D008237 2.0e-68 263.8 369 51.2
Manes.12G056300 Manihot esculenta HOM05D006271 ORTHO05D008237 5.9e-68 262.3 302 54.6
Dinv44551 Davidia involucrata HOM05D006271 ORTHO05D008237 2.9e-67 260.0 180 75.0
FAN08G2456 Fragaria x ananassa HOM05D006271 ORTHO05D008237 1.1e-66 258.1 321 49.5
Aa31LG5G6440 Aethionema arabicum HOM05D006271 ORTHO05D008237 3.6e-65 253.1 286 52.1
Peaxi162Scf00390g00528 Petunia axillaris HOM05D006271 ORTHO05D008237 3.6e-65 253.1 364 45.6
Sabra19G0124300 Salix brachista HOM05D006271 ORTHO05D008237 1.4e-64 251.1 369 48.8
Lalb_Chr22g0360771 Lupinus albus HOM05D006271 ORTHO05D008237 4.0e-64 249.6 386 43.3
EL10Ac7g15870 Beta vulgaris HOM05D006271 ORTHO05D008237 6.8e-64 248.8 374 48.1
Thhalv10016851m.g Eutrema salsugineum HOM05D006271 ORTHO05D008237 6.8e-64 248.8 297 51.2
Thecc.09G360000 Theobroma cacao HOM05D006271 ORTHO05D008237 2.6e-63 246.9 381 48.0
Sabra19G0130300 Salix brachista HOM05D006271 ORTHO05D008237 3.4e-63 246.5 375 48.5
A05p15180 Brassica napus HOM05D006271 ORTHO05D008237 4.4e-63 246.1 292 49.7
Medtr8g063090 Medicago truncatula HOM05D006271 ORTHO05D008237 4.4e-63 246.1 276 55.1
VMungo0464G0054 Vigna mungo HOM05D006271 ORTHO05D008237 1.7e-62 244.2 370 48.1
Potri.019G126500 Populus trichocarpa HOM05D006271 ORTHO05D008237 2.8e-62 243.4 375 49.3
TPR.G1139 Trifolium pratense HOM05D006271 ORTHO05D008237 3.7e-62 243.0 267 55.1
Phvul.008G153700 Phaseolus vulgaris HOM05D006271 ORTHO05D008237 4.8e-62 242.7 366 50.0
Sp4g12860 Schrenkiella parvula HOM05D006271 ORTHO05D008237 6.3e-62 242.3 295 49.2
BraA05t20437Z Brassica rapa HOM05D006271 ORTHO05D008237 1.4e-61 241.1 297 48.1
Gohir.D03G144000 Gossypium hirsutum HOM05D006271 ORTHO05D008237 1.4e-61 241.1 274 54.7
QL01p025615 Quercus lobata HOM05D006271 ORTHO05D008237 1.8e-61 240.7 503 37.0
Gorai.003G151300 Gossypium raimondii HOM05D006271 ORTHO05D008237 3.1e-61 240.0 278 54.0
AT2G30280 Arabidopsis thaliana HOM05D006271 ORTHO05D008237 5.4e-61 239.2 294 47.6
BcaB02g10312 Brassica carinata HOM05D006271 ORTHO05D008237 5.4e-61 239.2 270 50.7
Migut.N00750 Erythranthe guttata HOM05D006271 ORTHO05D008237 5.4e-61 239.2 286 49.3
Gohir.A03G024500 Gossypium hirsutum HOM05D006271 ORTHO05D008237 1.6e-60 237.7 274 54.4
Carub.0008s0813 Capsella rubella HOM05D006271 ORTHO05D008237 2.0e-60 237.3 285 49.5
COL.COLO4_11178 Corchorus olitorius HOM05D006271 ORTHO05D008237 7.7e-60 235.3 278 52.5
AL4G25130 Arabidopsis lyrata HOM05D006271 ORTHO05D008237 3.8e-59 233.0 294 47.3
unitig_60.g25562 Utricularia gibba HOM05D006271 ORTHO05D008237 5.5e-58 229.2 284 49.6
CARHR123600 Cardamine hirsuta HOM05D006271 ORTHO05D008237 9.5e-58 228.4 369 47.4
FvH4_5g27270 Fragaria vesca HOM05D006271 ORTHO05D008237 3.6e-57 226.5 218 56.9
Nn2g11075 Nelumbo nucifera HOM05D006271 ORTHO05D008237 4.7e-57 226.1 289 48.8
PSO339G2991 Papaver somniferum HOM05D006271 ORTHO05D008237 6.1e-57 225.7 338 44.7
BcaC02g11116 Brassica carinata HOM05D006271 ORTHO05D008237 1.8e-56 224.2 261 48.7
BolC4t23562H Brassica oleracea HOM05D006271 ORTHO05D008237 9.8e-55 218.4 282 46.1
Lj1g0015465 Lotus japonicus HOM05D006271 ORTHO05D008237 1.3e-54 218.0 361 48.2
THA.LOC104800777 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 2.4e-53 213.8 278 48.6
AUR62036230 Chenopodium quinoa HOM05D006271 ORTHO05D008237 7.7e-52 208.8 214 55.6
Os12g0110300 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 1.0e-51 208.4 294 48.0
Os11g0110066 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 3.3e-50 203.4 295 47.1
Medtr7g033685 Medicago truncatula HOM05D006271 ORTHO05D008237 9.5e-50 201.8 274 48.5
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 1.6e-49 201.1 291 45.4
HPP92_015428 Vanilla planifolia HOM05D006271 ORTHO05D008237 2.1e-49 200.7 370 39.5
AUR62009716 Chenopodium quinoa HOM05D006271 ORTHO05D008237 8.9e-48 195.3 290 45.5
C04p20240 Brassica napus HOM05D006271 ORTHO05D008237 2.0e-47 194.1 242 47.1
CDE04G1879 Ceratophyllum demersum HOM05D006271 ORTHO05D008237 2.3e-43 180.6 309 40.8
QL01p025639 Quercus lobata HOM05D006271 ORTHO05D008237 2.3e-43 180.6 163 59.5
TPR.G1080 Trifolium pratense HOM05D006271 ORTHO05D008237 5.6e-42 176.0 273 44.7
Lj1g0018317 Lotus japonicus HOM05D006271 ORTHO05D008237 9.5e-42 175.3 356 37.1
Ah.07g202380 Amaranthus hybridus HOM05D006271 ORTHO05D008237 3.7e-38 163.3 299 41.8
SEGI_17267 Sequoiadendron giganteum HOM05D006271 ORTHO05D008237 6.2e-33 146.0 280 37.9
AagrBONN_evm.TU.Sc2ySwM_344.4002 Anthoceros agrestis HOM05D006271 ORTHO05D008237 8.1e-33 145.6 302 35.8
unitig_60.g25741 Utricularia gibba HOM05D006271 ORTHO05D008237 2.9e-30 137.1 257 38.5
Zm00001eb404980 Zea mays HOM05D006271 ORTHO05D008237 7.1e-29 132.5 206 45.1
Pp3c12_13690 Physcomitrium patens HOM05D006271 ORTHO05D008237 3.0e-27 127.1 287 32.8
PSO384G0354 Papaver somniferum HOM05D006271 ORTHO05D008237 8.4e-22 109.0 97 64.9
Mapoly0055s0007 Marchantia polymorpha HOM05D006271 ORTHO05D008237 7.8e-20 102.4 303 28.7
SHI19233 Sapria himalayana HOM05D006271 ORTHO05D008237 7.8e-20 102.4 170 41.2
Ah.07g202370 Amaranthus hybridus HOM05D006271 ORTHO05D000898 1.0e-19 102.1 73 74.0
BolC4t27428H Brassica oleracea HOM05D006271 ORTHO05D023853 1.6e-12 78.2 216 33.3
C04p59170 Brassica napus HOM05D006271 ORTHO05D023853 6.0e-12 76.3 205 33.2
BcaB06g28355 Brassica carinata HOM05D006271 ORTHO05D008237 1.0e-11 75.5 116 41.4
PSO170G2099 Papaver somniferum HOM05D006271 ORTHO05D008237 2.8e-09 67.4 227 29.1
PSO017G3993 Papaver somniferum HOM05D006271 ORTHO05D008237 1.1e-08 65.5 212 29.7


User provided reference genes

Program Settings