Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050392 Camellia sinensis var. sinensis HOM05D001282 ORTHO05D010970 8.0e-137 490.3 235 100.0
Dinv05403 Davidia involucrata HOM05D001282 ORTHO05D001236 6.8e-35 151.8 109 73.4
Dinv41681 Davidia involucrata HOM05D001282 ORTHO05D001236 6.3e-33 145.2 109 68.8
Hma1.2p1_0855F.1_g228995 Hydrangea macrophylla HOM05D001282 ORTHO05D001236 1.2e-31 141.0 109 67.9
Actinidia25667 Actinidia chinensis HOM05D001282 ORTHO05D001236 2.7e-31 139.8 109 64.2
Hma1.2p1_2959F.1_g330840 Hydrangea macrophylla HOM05D001282 ORTHO05D010970 3.5e-31 139.4 109 67.0
CSS0014311 Camellia sinensis var. sinensis HOM05D001282 ORTHO05D001236 2.2e-30 136.7 109 67.0
vmacro12506 Vaccinium macrocarpon HOM05D001282 ORTHO05D010970 2.9e-30 136.3 110 66.4
Sabra13G0097500 Salix brachista HOM05D001282 ORTHO05D001236 6.1e-28 128.6 145 53.1
COL.COLO4_05835 Corchorus olitorius HOM05D001282 ORTHO05D001236 2.3e-27 126.7 112 60.7
Actinidia02596 Actinidia chinensis HOM05D001282 ORTHO05D010970 8.8e-27 124.8 113 57.5
DCAR_014782 Daucus carota HOM05D001282 ORTHO05D001236 8.8e-27 124.8 109 58.7
Oeu030009.1 Olea europaea HOM05D001282 ORTHO05D001236 8.8e-27 124.8 109 57.8
Rhsim06G0098900 Rhododendron simsii HOM05D008917 ORTHO05D010970 1.2e-26 124.4 110 60.9
Nitab4.5_0006501g0020 Nicotiana tabacum HOM05D001282 ORTHO05D001236 2.2e-25 120.2 110 55.5
CAN.G199.24 Capsicum annuum HOM05D001282 ORTHO05D001236 2.8e-25 119.8 110 55.5
Nitab4.5_0010710g0020 Nicotiana tabacum HOM05D001282 ORTHO05D001236 4.9e-25 119.0 110 55.5
Oeu004772.5 Olea europaea HOM05D001282 ORTHO05D001236 8.3e-25 118.2 109 54.1
Cc00_g07180 Coffea canephora HOM05D001282 ORTHO05D001236 1.1e-24 117.9 110 57.3
MSTRG.25430 Avicennia marina HOM05D001282 ORTHO05D001236 1.4e-24 117.5 109 57.8
Potri.013G115300 Populus trichocarpa HOM05D001282 ORTHO05D001236 1.4e-24 117.5 109 58.7
GSVIVG01034887001 Vitis vinifera HOM05D001282 ORTHO05D001236 1.4e-24 117.5 110 59.1
Peaxi162Scf00268g01314 Petunia axillaris HOM05D001282 ORTHO05D001236 3.1e-24 116.3 110 53.6
Thecc.08G200600 Theobroma cacao HOM05D001282 ORTHO05D001236 3.1e-24 116.3 112 56.2
Solyc06g065460.2 Solanum lycopersicum HOM05D001282 ORTHO05D001236 1.2e-23 114.4 110 53.6
Sopen06g023950 Solanum pennellii HOM05D001282 ORTHO05D001236 1.2e-23 114.4 110 53.6
Lj7P301T31 Lonicera japonica HOM05D001282 ORTHO05D010970 2.0e-23 113.6 104 60.6
CAN.G61.15 Capsicum annuum HOM05D001282 ORTHO05D001236 2.7e-23 113.2 109 55.0
Gohir.A05G249900 Gossypium hirsutum HOM05D001282 ORTHO05D001236 3.5e-23 112.8 109 54.1
Gohir.D11G163033 Gossypium hirsutum HOM05D001282 ORTHO05D010970 3.5e-23 112.8 109 54.1
Gohir.A02G061200 Gossypium hirsutum HOM05D001282 ORTHO05D001236 5.9e-23 112.1 112 57.1
Duzib177G0296 Durio zibethinus HOM05D001282 ORTHO05D001236 7.7e-23 111.7 112 56.2
Gohir.D05G251700 Gossypium hirsutum HOM05D001282 ORTHO05D001236 7.7e-23 111.7 109 54.1
TAR381G0652 Trochodendron aralioides HOM05D001282 ORTHO05D001236 1.7e-22 110.5 109 55.0
Migut.C01229 Erythranthe guttata HOM05D001282 ORTHO05D001236 6.6e-22 108.6 110 52.7
CiPaw.15G083300 Carya illinoinensis HOM05D001282 ORTHO05D001236 1.1e-21 107.8 116 55.2
Potri.019G085900 Populus trichocarpa HOM05D001282 ORTHO05D001236 1.1e-21 107.8 111 54.1
Cfa018208 Carpinus fangiana HOM05D001282 ORTHO05D001236 1.5e-21 107.5 116 52.6
Sabra19G0096500 Salix brachista HOM05D001282 ORTHO05D001236 1.5e-21 107.5 111 54.1
Atru.chr13.1849 Acer truncatum HOM05D001282 ORTHO05D001236 2.5e-21 106.7 110 56.4
SalBow7G1442 Salvia bowleyana HOM05D001282 ORTHO05D001236 2.5e-21 106.7 109 51.4
Duzib116G0685 Durio zibethinus HOM05D001282 ORTHO05D001236 3.3e-21 106.3 106 53.8
Gorai.009G263100 Gossypium raimondii HOM05D001282 ORTHO05D001236 3.3e-21 106.3 109 52.3
Lsat_1_v5_gn_1_8340 Lactuca sativa HOM05D001282 ORTHO05D001236 3.3e-21 106.3 111 57.7
Gorai.005G075500 Gossypium raimondii HOM05D001282 ORTHO05D001236 4.3e-21 105.9 112 55.4
Nn5g27829 Nelumbo nucifera HOM05D001282 ORTHO05D001236 4.3e-21 105.9 109 52.3
Ciclev10000547m.g Citrus clementina HOM05D001282 ORTHO05D001236 7.3e-21 105.1 110 55.5
Manes.18G099200 Manihot esculenta HOM05D001282 ORTHO05D001236 7.3e-21 105.1 101 57.4
Haze_17898 Corylus avellana HOM05D001282 ORTHO05D001236 1.6e-20 104.0 116 50.9
Gohir.D02G066600 Gossypium hirsutum HOM05D001282 ORTHO05D001236 3.6e-20 102.8 112 54.5
QL02p034232 Quercus lobata HOM05D001282 ORTHO05D001236 3.6e-20 102.8 110 52.7
Manes.02G190200 Manihot esculenta HOM05D001282 ORTHO05D001236 6.1e-20 102.1 102 55.9
Sopen11g009000 Solanum pennellii HOM05D001282 ORTHO05D001236 8.0e-20 101.7 110 53.6
TWI32G0875 Tripterygium wilfordii HOM05D001282 ORTHO05D001236 8.0e-20 101.7 110 53.6
SGA_v2.0_scaffold118G32455 Striga asiatica HOM05D001282 ORTHO05D001236 1.0e-19 101.3 106 50.9
Solyc11g017000.2 Solanum lycopersicum HOM05D001282 ORTHO05D001236 1.4e-19 100.9 110 53.6
ECA247G3423 Erigeron canadensis HOM05D001282 ORTHO05D001236 5.2e-19 99.0 118 52.5
Nitab4.5_0000531g0020 Nicotiana tabacum HOM05D001282 ORTHO05D001236 1.2e-18 97.8 110 52.7
TAR628G0098 Trochodendron aralioides HOM05D001282 ORTHO05D001236 2.6e-18 96.7 97 53.6
Nn1g08460 Nelumbo nucifera HOM05D001282 ORTHO05D001236 7.5e-18 95.1 109 47.7
MBI17_g06060_MAGBIO Magnolia biondii HOM05D001282 ORTHO05D001236 9.8e-18 94.7 128 46.1
Nitab4.5_0000159g0080 Nicotiana tabacum HOM05D001282 ORTHO05D001236 1.3e-17 94.4 110 51.8
MBI17_g42326_MAGBIO Magnolia biondii HOM05D001282 ORTHO05D010970 1.7e-17 94.0 123 46.3
TWI34G0755 Tripterygium wilfordii HOM05D001282 ORTHO05D001236 2.2e-17 93.6 138 42.0
Sc01g0001670 Simmondsia chinensis HOM05D001282 ORTHO05D001236 4.9e-17 92.4 114 48.2
ClCG09G010390 Citrullus lanatus HOM05D001282 ORTHO05D001236 8.3e-17 91.7 115 53.9
Thhalv10007023m.g Eutrema salsugineum HOM05D001282 ORTHO05D001236 1.1e-16 91.3 109 51.4
AL1G48870 Arabidopsis lyrata HOM05D001282 ORTHO05D001236 1.8e-16 90.5 114 50.0
CARHR033780 Cardamine hirsuta HOM05D001282 ORTHO05D001236 1.8e-16 90.5 112 50.9
CsaV3_7G024220 Cucumis sativus L. HOM05D001282 ORTHO05D001236 1.8e-16 90.5 115 50.4
PGR042G1721 Punica granatum HOM05D001282 ORTHO05D001236 1.8e-16 90.5 112 49.1
MELO3C023672.2 Cucumis melo HOM05D001282 ORTHO05D001236 3.2e-16 89.7 115 50.4
Carub.0001s3246 Capsella rubella HOM05D001282 ORTHO05D001236 5.4e-16 89.0 113 52.2
THA.LOC104806780 Tarenaya hassleriana HOM05D001282 ORTHO05D001236 5.4e-16 89.0 99 49.5
SGA_v2.0_scaffold24G10530 Striga asiatica HOM05D001282 ORTHO05D001236 1.6e-15 87.4 104 46.2
CANSAT25G2305 Cannabis sativa HOM05D001282 ORTHO05D001236 2.7e-15 86.7 119 45.4
Aa31LG6G8400 Aethionema arabicum HOM05D001282 ORTHO05D001236 3.5e-15 86.3 109 48.6
Hund27073 Selenicereus undatus HOM05D001282 ORTHO05D001236 3.5e-15 86.3 115 43.5
Hund16807 Selenicereus undatus HOM05D001282 ORTHO05D001236 5.9e-15 85.5 115 41.7
BcaB07g33134 Brassica carinata HOM05D001282 ORTHO05D001236 1.0e-14 84.7 111 48.6
Prupe.8G052300 Prunus persica HOM05D001282 ORTHO05D001236 1.0e-14 84.7 116 48.3
AUR62023586 Chenopodium quinoa HOM05D001282 ORTHO05D001236 1.3e-14 84.3 115 44.3
BcaC08g43785 Brassica carinata HOM05D001282 ORTHO05D001236 2.3e-14 83.6 114 48.2
C06p11670 Brassica napus HOM05D001282 ORTHO05D001236 2.3e-14 83.6 114 48.2
BolC6t36297H Brassica oleracea HOM05D001282 ORTHO05D001236 2.3e-14 83.6 114 48.2
Sed0014195 Sechium edule HOM05D001282 ORTHO05D001236 3.9e-14 82.8 115 47.8
EL10Ac1g00063 Beta vulgaris HOM05D001282 ORTHO05D001236 8.6e-14 81.6 110 45.5
MD05G1039900 Malus domestica HOM05D001282 ORTHO05D001236 1.5e-13 80.9 112 45.5
AT1G34320 Arabidopsis thaliana HOM05D001282 ORTHO05D001236 7.3e-13 78.6 112 46.4
FAN24G3448 Fragaria x ananassa HOM05D001282 ORTHO05D001236 1.6e-12 77.4 116 48.3
FvH4_2g12350 Fragaria vesca HOM05D001282 ORTHO05D001236 2.1e-12 77.0 116 48.3
Sed0011272 Sechium edule HOM05D001282 ORTHO05D001236 2.1e-12 77.0 134 40.3
FAN20G0193 Fragaria x ananassa HOM05D001282 ORTHO05D001236 3.6e-12 76.3 111 49.5
Eucgr.F02632 Eucalyptus grandis HOM05D001282 ORTHO05D001236 4.7e-12 75.9 108 42.6
arahy.Tifrunner.gnm1.ann1.AMY8LP Arachis hypogaea HOM05D001282 ORTHO05D001236 1.0e-11 74.7 120 42.5
Lj5g0007456 Lotus japonicus HOM05D001282 ORTHO05D001236 1.0e-11 74.7 114 43.9
PSO170G2937 Papaver somniferum HOM05D001282 ORTHO05D001236 1.0e-11 74.7 110 45.5
PSO782G4055 Papaver somniferum HOM05D001282 ORTHO05D001236 1.0e-11 74.7 110 45.5
MD10G1045400 Malus domestica HOM05D001282 ORTHO05D001236 3.1e-11 73.2 106 45.3
Sp1g29530 Schrenkiella parvula HOM05D001282 ORTHO05D001236 5.2e-11 72.4 98 44.9
VMungo0720G0238 Vigna mungo HOM05D001282 ORTHO05D001236 5.2e-11 72.4 113 44.2
Ah.05g177830 Amaranthus hybridus HOM05D001282 ORTHO05D001236 1.2e-10 71.2 115 40.0
arahy.Tifrunner.gnm1.ann1.SUJ24G Arachis hypogaea HOM05D001282 ORTHO05D001236 1.2e-10 71.2 120 41.7
BcaB04g17885 Brassica carinata HOM05D001282 ORTHO05D001236 4.4e-10 69.3 111 43.2
Aqoxy6G00140 Aquilegia oxysepala HOM05D001282 ORTHO05D001236 9.8e-10 68.2 110 44.5
MD12G1057900 Malus domestica HOM05D001282 ORTHO05D001236 9.8e-10 68.2 106 39.6
HanXRQChr08g0217701 Helianthus annuus HOM05D001282 ORTHO05D001236 1.7e-09 67.4 101 48.5
RcHm_v2.0_Chr6g0272361 Rosa chinensis HOM05D001282 ORTHO05D001236 2.2e-09 67.0 116 43.1
CiPaw.16G062800 Carya illinoinensis HOM05D001282 ORTHO05D001236 2.9e-09 66.6 78 52.6
Glyma.20G174000 Glycine max HOM05D001282 ORTHO05D001236 2.9e-09 66.6 112 42.0
Ca_10627_v3 Cicer arietinum L. HOM05D001282 ORTHO05D001236 1.1e-08 64.7 118 39.8
ATR1134G016 Amborella trichopoda HOM05D001282 ORTHO05D001236 9.2e-08 61.6 113 40.7
HanXRQChr04g0111621 Helianthus annuus HOM05D001282 ORTHO05D001236 1.2e-07 61.2 114 43.0
TAR624G0793 Trochodendron aralioides HOM05D001282 ORTHO05D001236 1.2e-07 61.2 57 57.9
A09p32140 Brassica napus HOM05D001282 ORTHO05D001236 3.5e-07 59.7 101 43.6
BraA09t38759Z Brassica rapa HOM05D001282 ORTHO05D001236 3.5e-07 59.7 101 43.6
Lalb_Chr01g0009961 Lupinus albus HOM05D001282 ORTHO05D001236 3.5e-07 59.7 116 37.9
TPR.G15711 Trifolium pratense HOM05D001282 ORTHO05D001236 7.8e-07 58.5 116 37.9
Gorai.001G241600 Gossypium raimondii HOM05D001282 ORTHO05D001236 1.7e-06 57.4 109 40.4
Gohir.D07G213700 Gossypium hirsutum HOM05D001282 ORTHO05D001236 2.3e-06 57.0 109 40.4
Lalb_Chr21g0305691 Lupinus albus HOM05D001282 ORTHO05D001236 3.0e-06 56.6 133 34.6
Psat6g189400 Pisum sativum HOM05D001282 ORTHO05D001236 3.9e-06 56.2 108 38.9
Gohir.A07G207700 Gossypium hirsutum HOM05D001282 ORTHO05D001236 6.6e-06 55.5 109 39.4


User provided reference genes

Program Settings