Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.0e-119 433.3 209 100.0
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 4.5e-99 364.8 197 89.3
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 4.7e-96 354.8 198 85.4
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 1.8e-95 352.8 198 84.8
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 3.0e-95 352.1 200 82.0
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 4.0e-95 351.7 197 83.2
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 1.2e-94 350.1 197 82.7
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 2.6e-94 349.0 197 83.2
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 7.5e-94 347.4 197 83.8
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 2.2e-93 345.9 197 82.2
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 4.8e-93 344.7 197 82.2
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 1.8e-92 342.8 197 82.2
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 1.8e-92 342.8 197 82.2
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 5.3e-92 341.3 201 80.1
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 5.3e-92 341.3 197 81.2
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 7.0e-92 340.9 197 80.7
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 1.2e-91 340.1 195 82.1
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.6e-91 339.7 197 82.2
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.6e-91 339.7 198 80.8
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 1.6e-91 339.7 195 81.5
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 1.6e-91 339.7 197 80.2
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 1.6e-91 339.7 197 80.2
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 2.7e-91 339.0 197 80.7
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 5.9e-91 337.8 195 80.5
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 5.9e-91 337.8 197 79.7
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 7.7e-91 337.4 197 81.2
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 1.3e-90 336.7 197 81.7
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 1.3e-90 336.7 199 78.9
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 1.7e-90 336.3 197 80.7
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 1.7e-90 336.3 197 79.7
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 2.2e-90 335.9 197 79.2
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 2.9e-90 335.5 197 80.7
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 3.8e-90 335.1 197 80.2
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 5.0e-90 334.7 197 81.2
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 5.0e-90 334.7 197 79.7
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 6.5e-90 334.3 197 80.2
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 6.5e-90 334.3 201 77.6
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.5e-89 333.2 195 80.5
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 1.5e-89 333.2 197 79.2
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 2.5e-89 332.4 197 80.2
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 2.5e-89 332.4 197 79.2
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 4.2e-89 331.6 197 79.7
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 4.2e-89 331.6 197 79.7
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 4.2e-89 331.6 197 79.7
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 4.2e-89 331.6 197 79.7
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 4.2e-89 331.6 197 79.7
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 5.5e-89 331.3 198 79.3
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 5.5e-89 331.3 197 78.7
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 5.5e-89 331.3 197 78.7
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 7.2e-89 330.9 197 80.7
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 7.2e-89 330.9 197 80.7
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 7.2e-89 330.9 197 76.1
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 9.4e-89 330.5 197 80.7
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 9.4e-89 330.5 197 80.2
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 1.2e-88 330.1 197 80.2
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.6e-88 329.7 197 80.2
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 2.1e-88 329.3 197 76.1
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 2.7e-88 328.9 198 79.3
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 2.7e-88 328.9 197 79.7
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 4.7e-88 328.2 195 79.5
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 4.7e-88 328.2 195 79.5
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 6.1e-88 327.8 197 76.6
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 6.1e-88 327.8 197 79.7
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 8.0e-88 327.4 197 79.2
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 8.0e-88 327.4 197 79.7
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 8.0e-88 327.4 197 78.7
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 8.0e-88 327.4 197 80.2
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 1.4e-87 326.6 197 78.7
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 2.3e-87 325.9 197 78.2
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 2.3e-87 325.9 197 77.7
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 2.3e-87 325.9 197 76.6
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 4.0e-87 325.1 197 78.2
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 5.2e-87 324.7 197 77.2
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 5.2e-87 324.7 197 79.7
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 5.2e-87 324.7 197 77.7
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 6.8e-87 324.3 197 76.6
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 6.8e-87 324.3 198 78.3
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 6.8e-87 324.3 197 76.6
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 1.2e-86 323.6 197 79.7
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 1.5e-86 323.2 198 78.3
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 1.5e-86 323.2 197 78.2
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 1.5e-86 323.2 198 77.8
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 2.0e-86 322.8 198 78.3
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 2.0e-86 322.8 197 76.1
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.0e-86 322.8 197 77.7
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.0e-86 322.8 197 77.7
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 2.6e-86 322.4 195 77.4
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 2.6e-86 322.4 197 75.1
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 7.5e-86 320.9 192 78.6
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 1.3e-85 320.1 195 77.4
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 1.7e-85 319.7 197 75.1
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 3.7e-85 318.5 197 75.1
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 8.3e-85 317.4 198 77.8
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 8.3e-85 317.4 195 74.4
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 8.3e-85 317.4 197 77.7
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 1.1e-84 317.0 197 74.6
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 1.4e-84 316.6 183 79.8
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 1.4e-84 316.6 246 64.2
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 3.1e-84 315.5 197 75.6
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 3.1e-84 315.5 197 74.1
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 3.1e-84 315.5 197 75.6
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 5.4e-84 314.7 197 75.1
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 7.0e-84 314.3 200 75.0
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 7.0e-84 314.3 198 76.8
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 7.0e-84 314.3 197 75.6
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 9.1e-84 313.9 199 75.9
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 2.0e-83 312.8 197 74.1
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 3.5e-83 312.0 197 74.1
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 3.5e-83 312.0 197 74.6
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 7.7e-83 310.8 197 75.1
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 7.7e-83 310.8 197 75.1
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 1.0e-82 310.5 197 73.6
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 1.0e-82 310.5 197 73.6
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 1.0e-82 310.5 197 73.6
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 1.0e-82 310.5 197 73.6
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 1.0e-82 310.5 197 73.6
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 1.0e-82 310.5 195 75.4
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 1.3e-82 310.1 196 75.0
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 2.9e-82 308.9 197 74.6
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 2.9e-82 308.9 197 74.6
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 2.9e-82 308.9 197 75.1
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 6.6e-82 307.8 189 76.2
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 1.1e-81 307.0 197 72.1
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 1.1e-81 307.0 197 72.6
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 1.1e-81 307.0 197 74.6
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 1.9e-81 306.2 197 73.6
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 2.5e-81 305.8 197 73.6
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 2.5e-81 305.8 197 76.1
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 3.3e-81 305.4 197 73.6
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 3.3e-81 305.4 197 74.1
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 5.5e-81 304.7 197 73.6
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 1.6e-80 303.1 188 75.5
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 4.7e-80 301.6 197 74.1
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 4.7e-80 301.6 197 73.1
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 8.0e-80 300.8 197 71.6
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 8.0e-80 300.8 197 72.1
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 6.8e-79 297.7 197 70.6
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 4.4e-78 295.0 197 72.6
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 7.5e-78 294.3 199 73.4
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 9.8e-78 293.9 197 74.6
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 1.7e-77 293.1 198 70.2
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 2.2e-77 292.7 198 69.7
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 6.3e-77 291.2 167 82.0
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 1.1e-76 290.4 199 68.3
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 1.8e-76 289.7 201 69.2
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 1.6e-75 286.6 198 69.2
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 3.5e-75 285.4 201 68.7
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 7.8e-75 284.3 198 67.2
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 1.0e-74 283.9 185 73.5
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 2.3e-74 282.7 197 69.0
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 6.6e-74 281.2 206 68.9
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 1.1e-73 280.4 197 64.5
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 2.1e-72 276.2 197 62.9
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 8.0e-72 274.2 197 62.9
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 2.9e-69 265.8 196 63.3
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 8.3e-69 264.2 197 61.9
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 3.5e-67 258.8 197 59.9
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 4.6e-67 258.5 182 67.0
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 7.8e-67 257.7 174 72.4
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 1.9e-65 253.1 199 58.8
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 8.9e-63 244.2 149 79.2
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 1.2e-62 243.8 180 65.6
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 1.5e-62 243.4 200 58.0
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 6.2e-56 221.5 197 54.3
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 1.5e-54 216.9 214 50.9
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 1.7e-50 203.4 168 61.3
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 2.8e-48 196.1 202 49.0
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 6.2e-48 194.9 221 46.6
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 3.1e-47 192.6 116 78.4
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 4.8e-40 168.7 119 66.4
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 1.1e-39 167.5 119 66.4
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 9.0e-39 164.5 142 58.5
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 1.2e-38 164.1 101 74.3
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 1.7e-34 150.2 88 79.5
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 3.0e-34 149.4 115 62.6
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 1.7e-29 133.7 89 71.9
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 9.0e-23 111.3 134 52.2
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.3e-18 96.7 203 29.6
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 3.7e-16 89.4 183 29.0
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 6.2e-16 88.6 175 30.3
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 4.5e-14 82.4 217 24.4
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 3.2e-12 76.3 41 90.2
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 3.3e-09 66.2 48 68.8


User provided reference genes

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