Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 3.9e-116 421.4 199 100.0
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.4e-110 402.9 199 96.0
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 4.3e-91 338.2 197 78.7
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 9.9e-88 327.0 199 76.4
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 4.6e-85 318.2 200 73.0
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 5.6e-83 311.2 199 73.4
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 1.4e-81 306.6 199 71.9
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 1.9e-78 296.2 188 73.4
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 6.7e-76 287.7 199 68.8
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.4e-73 280.0 199 68.3
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.0e-72 276.2 179 79.3
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 5.0e-71 271.6 189 68.3
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 6.1e-69 264.6 199 61.8
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 9.7e-67 257.3 200 60.0
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 9.7e-67 257.3 201 58.2
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.3e-66 256.9 200 58.5
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 4.8e-66 255.0 200 58.0
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 6.3e-66 254.6 201 57.2
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 1.8e-65 253.1 199 59.3
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 4.1e-65 251.9 201 59.7
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 9.1e-65 250.8 200 58.5
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 7.7e-64 247.7 201 58.7
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 2.9e-63 245.7 199 57.3
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 3.8e-63 245.4 201 58.7
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 5.0e-63 245.0 199 56.8
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 6.5e-63 244.6 207 59.4
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 6.5e-63 244.6 201 55.7
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 8.5e-63 244.2 199 56.8
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.1e-62 243.8 199 58.8
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.2e-62 242.3 201 59.2
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 4.2e-62 241.9 201 54.2
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.5e-62 241.5 197 59.4
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 5.5e-62 241.5 201 58.2
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 5.5e-62 241.5 200 55.5
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 5.5e-62 241.5 200 56.5
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 9.4e-62 240.7 201 53.7
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 1.2e-61 240.4 201 60.7
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.1e-61 239.6 201 58.2
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 2.7e-61 239.2 201 57.7
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 2.7e-61 239.2 186 60.8
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 4.6e-61 238.4 201 57.2
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 4.6e-61 238.4 200 57.5
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 6.1e-61 238.0 199 52.3
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 6.1e-61 238.0 199 57.3
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 7.9e-61 237.7 201 56.7
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 7.9e-61 237.7 201 57.2
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 1.4e-60 236.9 199 56.8
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 1.8e-60 236.5 201 57.2
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.0e-60 235.7 197 57.4
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 3.0e-60 235.7 199 55.8
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 3.0e-60 235.7 201 56.7
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.1e-59 233.8 199 56.8
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.1e-59 233.8 199 55.8
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 2.0e-59 233.0 196 58.2
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 2.6e-59 232.6 201 54.2
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 2.6e-59 232.6 201 54.2
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 4.4e-59 231.9 199 54.3
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 4.4e-59 231.9 200 58.0
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 7.4e-59 231.1 201 56.2
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 9.7e-59 230.7 201 56.2
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 2.2e-58 229.6 201 54.2
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 3.7e-58 228.8 200 56.5
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 3.7e-58 228.8 199 53.8
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 6.3e-58 228.0 199 54.3
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 8.2e-58 227.6 199 55.3
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 1.1e-57 227.3 201 51.7
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 1.8e-57 226.5 201 53.7
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 2.4e-57 226.1 199 55.3
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 2.4e-57 226.1 201 55.2
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 4.1e-57 225.3 191 55.5
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 2.0e-56 223.0 185 58.4
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.0e-56 223.0 194 54.6
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 2.6e-56 222.6 194 55.2
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 3.4e-56 222.2 201 53.7
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 1.3e-55 220.3 201 51.2
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 6.5e-55 218.0 204 54.4
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 6.5e-55 218.0 178 57.9
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 8.5e-55 217.6 200 52.0
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.1e-54 217.2 202 53.0
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.9e-54 216.5 200 51.0
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 4.2e-54 215.3 198 53.5
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.2e-54 215.3 198 53.5
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 7.2e-54 214.5 214 50.0
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 9.4e-54 214.2 182 56.0
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 1.6e-53 213.4 186 57.5
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 4.7e-53 211.8 199 53.3
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 6.1e-53 211.5 199 51.3
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 7.9e-53 211.1 184 55.4
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.4e-52 210.3 201 51.7
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 2.3e-52 209.5 201 51.7
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 2.3e-52 209.5 200 50.0
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 3.0e-52 209.1 199 48.7
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 3.0e-52 209.1 178 55.6
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 6.7e-52 208.0 199 48.7
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 6.7e-52 208.0 199 48.7
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 6.7e-52 208.0 199 48.7
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 6.7e-52 208.0 173 59.0
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 1.5e-51 206.8 197 48.2
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 1.5e-51 206.8 201 49.3
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 2.0e-51 206.5 201 50.2
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 2.6e-51 206.1 178 57.3
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 2.6e-51 206.1 179 54.2
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 3.3e-51 205.7 184 53.3
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 4.4e-51 205.3 170 57.1
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 5.7e-51 204.9 201 51.2
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 7.4e-51 204.5 200 49.5
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 9.7e-51 204.1 201 48.8
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 9.7e-51 204.1 182 52.7
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 1.3e-50 203.8 201 49.3
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 1.3e-50 203.8 201 49.8
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 1.3e-50 203.8 201 49.8
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 1.3e-50 203.8 201 49.3
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 1.3e-50 203.8 202 49.0
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 2.8e-50 202.6 206 48.5
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 3.7e-50 202.2 177 54.2
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 6.3e-50 201.4 201 49.3
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 6.3e-50 201.4 186 51.1
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 1.4e-49 200.3 200 47.5
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 1.4e-49 200.3 178 53.4
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 2.4e-49 199.5 204 52.0
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 3.1e-49 199.1 199 47.2
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 5.3e-49 198.4 198 48.5
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 1.2e-48 197.2 204 51.5
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 2.0e-48 196.4 187 48.7
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 7.7e-48 194.5 203 47.3
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 5.0e-47 191.8 220 47.3
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 6.5e-47 191.4 171 53.2
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 6.5e-47 191.4 186 49.5
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 1.9e-46 189.9 204 48.0
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 2.5e-46 189.5 202 45.0
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 2.1e-45 186.4 186 45.7
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 1.8e-44 183.3 204 47.1
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 5.2e-44 181.8 218 43.6
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 6.7e-44 181.4 189 46.0
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 2.0e-43 179.9 185 49.2
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 9.7e-43 177.6 199 46.2
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 3.7e-42 175.6 220 41.8
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.7e-42 175.6 204 44.6
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 3.7e-42 175.6 157 54.8
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 1.1e-41 174.1 248 40.3
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 1.1e-41 174.1 200 45.5
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 2.0e-40 169.9 138 57.2
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 5.9e-40 168.3 199 43.2
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 5.9e-40 168.3 203 43.3
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 1.0e-39 167.5 165 48.5
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 9.4e-38 161.0 201 43.3
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 5.2e-36 155.2 218 39.9
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 5.4e-33 145.2 145 49.7
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 7.7e-32 141.4 208 39.4
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 1.3e-31 140.6 240 34.6
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 2.5e-30 136.3 106 61.3
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 3.2e-30 136.0 152 44.1
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 2.8e-29 132.9 278 30.6
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 3.6e-29 132.5 197 37.1
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 5.2e-28 128.6 181 40.9
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 6.8e-28 128.3 85 65.9
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 8.8e-28 127.9 199 38.2
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 2.6e-27 126.3 293 27.6
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 9.8e-27 124.4 165 40.6
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.1e-25 119.0 79 69.6
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 2.7e-24 116.3 86 64.0
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 3.5e-24 115.9 152 38.2
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 5.0e-23 112.1 123 44.7
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 2.5e-22 109.8 146 38.4
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.0e-20 104.4 167 35.3
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.0e-20 104.4 77 63.6
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 4.0e-20 102.4 173 34.1
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 8.9e-20 101.3 133 41.4
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.4e-19 99.0 184 37.0
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 1.4e-17 94.0 62 62.9
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 4.1e-17 92.4 64 68.8
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 2.7e-16 89.7 47 83.0
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 2.7e-16 89.7 143 38.5
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 1.3e-15 87.4 69 56.5
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 8.6e-15 84.7 107 43.9
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.5e-14 84.0 61 59.0
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 4.7e-13 79.0 87 47.1
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 3.7e-10 69.3 45 68.9
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 7.0e-09 65.1 97 34.0
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 1.3e-07 60.8 62 48.4
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 8.6e-07 58.2 52 57.7
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 9.5e-06 54.7 63 39.7


User provided reference genes

Program Settings