Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050017 Camellia sinensis var. sinensis HOM05D000806 ORTHO05D002320 6.2e-160 567.4 283 100.0
Hma1.2p1_0355F.1_g133926 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 5.2e-106 388.3 255 78.8
CAN.G219.28 Capsicum annuum HOM05D001133 ORTHO05D000941 8.6e-93 344.4 284 66.9
Peaxi162Scf00021g00818 Petunia axillaris HOM05D000806 ORTHO05D002320 6.1e-91 338.2 277 67.9
DCAR_032493 Daucus carota HOM05D000806 ORTHO05D002320 1.3e-85 320.5 249 69.1
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 6.6e-85 318.2 249 69.1
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 2.5e-84 316.2 279 63.8
Solyc00g500065.1 Solanum lycopersicum HOM05D000806 ORTHO05D002320 6.8e-82 308.1 253 67.6
HanXRQChr00c0702g0576831 Helianthus annuus HOM05D000806 ORTHO05D002320 1.2e-81 307.4 249 67.1
HanXRQChr01g0020371 Helianthus annuus HOM05D000806 ORTHO05D002320 1.2e-81 307.4 249 67.1
HanXRQChr02g0044911 Helianthus annuus HOM05D000806 ORTHO05D002320 1.2e-81 307.4 249 67.1
HanXRQChr10g0289251 Helianthus annuus HOM05D000806 ORTHO05D002320 1.2e-81 307.4 249 67.1
HanXRQChr11g0326811 Helianthus annuus HOM05D000806 ORTHO05D002320 1.2e-81 307.4 249 67.1
HanXRQCPg0580021 Helianthus annuus HOM05D000806 ORTHO05D002320 1.2e-81 307.4 249 67.1
PGR111G0026 Punica granatum HOM05D000806 ORTHO05D002320 2.6e-81 306.2 249 67.1
Nn010s41432 Nelumbo nucifera HOM05D000806 ORTHO05D002320 1.1e-76 290.8 265 63.8
RcHm_v2.0_CPg0502101 Rosa chinensis HOM05D000806 ORTHO05D002320 1.9e-76 290.0 251 64.1
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.6e-75 285.8 254 63.4
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.4e-74 283.9 254 63.4
Sed0009930 Sechium edule HOM05D000806 ORTHO05D002320 1.5e-73 280.4 237 65.0
Nn010s41447 Nelumbo nucifera HOM05D000806 ORTHO05D002320 3.7e-72 275.8 265 61.5
CAN.G1183.3 Capsicum annuum HOM05D000806 ORTHO05D002320 6.4e-72 275.0 224 68.3
PSO548G0072 Papaver somniferum HOM05D000806 ORTHO05D002320 1.1e-71 274.2 249 60.6
HanXRQChr08g0210341 Helianthus annuus HOM05D000806 ORTHO05D002320 2.4e-71 273.1 230 65.7
Potri.013G162600 Populus trichocarpa HOM05D000806 ORTHO05D002320 2.4e-71 273.1 251 60.6
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 2.1e-70 270.0 267 56.9
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.1e-70 270.0 267 56.9
CAN.G1012.4 Capsicum annuum HOM05D000806 ORTHO05D002320 3.5e-70 269.2 218 67.9
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 1.7e-69 266.9 251 62.2
arahy.Tifrunner.gnm1.ann1.0T2FMW Arachis hypogaea HOM05D000445 ORTHO05D000314 5.0e-69 265.4 252 59.1
HanXRQChr10g0283541 Helianthus annuus HOM05D000806 ORTHO05D002320 1.2e-67 260.8 249 59.4
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.6e-67 259.2 267 55.4
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.6e-67 259.2 267 55.4
LjContig00318g0000728 Lotus japonicus HOM05D000806 ORTHO05D002320 2.3e-66 256.5 254 57.5
EL10As15g24118 Beta vulgaris HOM05D001133 ORTHO05D000941 5.2e-66 255.4 254 59.1
HanXRQChr02g0041561 Helianthus annuus HOM05D000806 ORTHO05D002320 6.8e-66 255.0 249 57.8
RcHm_v2.0_Chr5g0042991 Rosa chinensis HOM05D000806 ORTHO05D002320 7.8e-62 241.5 210 64.8
MELO3C000334.2 Cucumis melo HOM05D000806 ORTHO05D002320 5.6e-60 235.3 196 68.4
arahy.Tifrunner.gnm1.ann1.J4M97S Arachis hypogaea HOM05D000806 ORTHO05D002320 9.5e-60 234.6 247 55.5
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.8e-58 230.3 254 54.7
HanXRQChr13g0413531 Helianthus annuus HOM05D000806 ORTHO05D002320 1.7e-56 223.8 179 67.6
BolSC29t60465H Brassica oleracea HOM05D000806 ORTHO05D002320 2.2e-56 223.4 244 53.3
BolSC47t61099H Brassica oleracea HOM05D000806 ORTHO05D002320 2.2e-56 223.4 244 53.3
C09p40220 Brassica napus HOM05D000806 ORTHO05D002320 4.9e-56 222.2 244 53.3
Thhalv10011034m.g Eutrema salsugineum HOM05D000806 ORTHO05D002320 4.1e-55 219.2 244 52.5
Gohir.D13G043800 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.4e-55 218.8 254 52.8
BraA06t25423Z Brassica rapa HOM05D000806 ORTHO05D002320 2.1e-54 216.9 244 52.0
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 2.1e-54 216.9 244 52.0
ATCG00500 Arabidopsis thaliana HOM05D000806 ORTHO05D002320 1.7e-53 213.8 247 52.6
Migut.L00565 Erythranthe guttata HOM05D000806 ORTHO05D002320 7.3e-52 208.4 188 60.6
Eucgr.I02537 Eucalyptus grandis HOM05D000806 ORTHO05D002320 1.5e-49 200.7 211 57.8
Lj1g0000993 Lotus japonicus HOM05D000806 ORTHO05D002320 7.6e-49 198.4 240 50.8
AL2G21530 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 4.6e-46 189.1 244 48.4
MELO3C029533.2 Cucumis melo HOM05D000806 ORTHO05D002320 3.0e-45 186.4 151 65.6
Lsat_1_v5_gn_7_98321 Lactuca sativa HOM05D000806 ORTHO05D002320 1.5e-44 184.1 254 48.0
MELO3C028653.2 Cucumis melo HOM05D000806 ORTHO05D002320 1.9e-44 183.7 158 67.7
Lsat_1_v5_gn_4_102681 Lactuca sativa HOM05D000806 ORTHO05D002320 1.9e-44 183.7 158 64.6
BolSC46t60998H Brassica oleracea HOM05D000806 ORTHO05D002320 1.8e-42 177.2 201 52.2
arahy.Tifrunner.gnm1.ann1.HP88CG Arachis hypogaea HOM05D000806 ORTHO05D002320 3.1e-42 176.4 180 55.0
Solyc09g091410.2 Solanum lycopersicum HOM05D000806 ORTHO05D002320 1.3e-40 171.0 132 69.7
Nitab4.5_0009663g0050 Nicotiana tabacum HOM05D000806 ORTHO05D002320 4.2e-39 166.0 195 48.7
CAN.G1.10 Capsicum annuum HOM05D000806 ORTHO05D002320 1.2e-38 164.5 135 68.9
CARHR282090 Cardamine hirsuta HOM05D000806 ORTHO05D002320 5.6e-36 155.6 177 54.8
MELO3C034228.2 Cucumis melo HOM05D000806 ORTHO05D002320 1.3e-35 154.5 142 64.8
HanXRQChr10g0284231 Helianthus annuus HOM05D000806 ORTHO05D002320 1.4e-34 151.0 108 70.4
Migut.D01360 Erythranthe guttata HOM05D000806 ORTHO05D002320 1.3e-32 144.4 199 45.7
Gorai.003G066100 Gossypium raimondii HOM05D000806 ORTHO05D002320 6.0e-30 135.6 207 43.0
Gohir.D13G123550 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.1e-28 131.3 133 60.2
Gohir.A07G163654 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.5e-28 131.0 127 55.9
Gohir.A11G156733 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.5e-28 131.0 119 64.7
Gorai.013G138600 Gossypium raimondii HOM05D000806 ORTHO05D002320 1.5e-28 131.0 119 65.5
EL10As12g24027 Beta vulgaris HOM05D000806 ORTHO05D002320 1.9e-28 130.6 177 52.5
Gohir.A07G134850 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.1e-27 127.1 102 69.6
Gohir.A09G101966 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.4e-26 123.6 209 41.6
MD02G1049500 Malus domestica HOM05D000806 ORTHO05D002320 1.2e-25 121.3 116 59.5
arahy.Tifrunner.gnm1.ann1.3WU3U6 Arachis hypogaea HOM05D000806 ORTHO05D002320 2.6e-25 120.2 117 59.8
Hma1.2p1_0242F.1_g100626 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 5.8e-25 119.0 84 72.6
Hma1.2p1_0355F.1_g133923 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 5.8e-25 119.0 84 72.6
BolC9t55819H Brassica oleracea HOM05D000806 ORTHO05D002320 7.6e-25 118.6 118 51.7
SGA_v2.0_scaffold781G53597 Striga asiatica HOM05D000806 ORTHO05D002320 1.3e-24 117.9 153 47.7
Lalb_Chr23g0274541 Lupinus albus HOM05D000806 ORTHO05D002320 3.8e-24 116.3 108 62.0
MD02G1049600 Malus domestica HOM05D001133 ORTHO05D000941 3.2e-23 113.2 100 65.0
MD11G1294800 Malus domestica HOM05D000806 ORTHO05D002320 1.2e-22 111.3 86 68.6
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.7e-22 110.2 208 39.9
Solyc04g039830.3 Solanum lycopersicum HOM05D000806 ORTHO05D002320 1.1e-20 104.8 227 38.8
MD11G1294900 Malus domestica HOM05D001133 ORTHO05D000941 3.3e-20 103.2 91 64.8
MELO3C031612.2 Cucumis melo HOM05D000806 ORTHO05D002320 4.8e-19 99.4 125 52.8
Gorai.001G206400 Gossypium raimondii HOM05D001133 ORTHO05D000941 1.1e-18 98.2 197 38.6
Lsat_1_v5_gn_4_69480 Lactuca sativa HOM05D000806 ORTHO05D002320 2.6e-17 93.6 98 55.1
Gorai.001G212300 Gossypium raimondii HOM05D000806 ORTHO05D002320 1.3e-16 91.3 92 62.0
Gohir.A08G085042 Gossypium hirsutum HOM05D000806 ORTHO05D002320 6.5e-16 89.0 84 64.3
Nn1g04062 Nelumbo nucifera HOM05D000806 ORTHO05D002320 5.5e-15 85.9 76 64.5
Nn1g07561 Nelumbo nucifera HOM05D000806 ORTHO05D002320 5.5e-15 85.9 76 64.5
Lsat_1_v5_gn_2_70561 Lactuca sativa HOM05D000806 ORTHO05D002320 6.1e-14 82.4 72 61.1
arahy.Tifrunner.gnm1.ann1.66QNKN Arachis hypogaea HOM05D000806 ORTHO05D038833 2.3e-13 80.5 58 65.5
Phvul.002G278116 Phaseolus vulgaris HOM05D000806 ORTHO05D002320 2.3e-13 80.5 108 44.4
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.9e-13 79.7 67 62.7
Gohir.A07G163645 Gossypium hirsutum HOM05D001133 ORTHO05D000941 5.1e-13 79.3 66 59.1
Gohir.D04G104036 Gossypium hirsutum HOM05D000806 ORTHO05D002320 8.8e-13 78.6 73 63.0
Sabra10G0056400 Salix brachista HOM05D001133 ORTHO05D000941 6.3e-11 72.4 71 59.2
Psat0s1586g0200 Pisum sativum HOM05D000806 ORTHO05D002320 1.8e-10 70.9 241 28.2
CAN.G398.12 Capsicum annuum HOM05D001133 ORTHO05D000941 5.3e-10 69.3 62 62.9
Glyma.15G248500 Glycine max HOM05D000806 ORTHO05D002320 1.5e-09 67.8 178 34.3
Medtr4g050863 Medicago truncatula HOM05D062263 ORTHO05D002320 5.9e-09 65.9 184 33.2
Psat0s1152g0040 Pisum sativum HOM05D000806 ORTHO05D002320 5.9e-09 65.9 106 39.6
Gorai.005G127400 Gossypium raimondii HOM05D000806 ORTHO05D002320 1.0e-08 65.1 51 62.7
Psat0s2754g0160 Pisum sativum HOM05D000806 ORTHO05D002320 1.0e-08 65.1 134 35.1
Psat0s6989g0080 Pisum sativum HOM05D000806 ORTHO05D002320 1.0e-08 65.1 134 35.1
Medtr5g009280 Medicago truncatula HOM05D000806 ORTHO05D002320 3.8e-08 63.2 41 70.7
Lsat_1_v5_gn_4_69500 Lactuca sativa HOM05D000806 ORTHO05D002320 7.2e-07 58.9 37 67.6
CAN.G212.7 Capsicum annuum HOM05D000680 ORTHO05D002320 2.7e-06 57.0 71 49.3
AL2G20668 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 3.6e-06 56.6 81 48.1
Gohir.D07G185900 Gossypium hirsutum HOM05D001133 ORTHO05D000941 4.7e-06 56.2 65 58.5
arahy.Tifrunner.gnm1.ann1.92HTUM Arachis hypogaea HOM05D000890 ORTHO05D000697 7.9e-06 55.5 49 59.2


User provided reference genes

Program Settings