Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049795 Camellia sinensis var. sinensis HOM05D000555 ORTHO05D000646 5.3e-183 644.4 372 100.0
CSS0009323 Camellia sinensis var. sinensis HOM05D000555 ORTHO05D000646 6.0e-171 604.4 355 98.9
CSS0015850 Camellia sinensis var. sinensis HOM05D000555 ORTHO05D000646 4.1e-143 511.9 352 84.4
CSS0031647 Camellia sinensis var. sinensis HOM05D000555 ORTHO05D000646 1.5e-129 466.8 356 80.1
Actinidia22299 Actinidia chinensis HOM05D000555 ORTHO05D000646 2.1e-83 313.5 358 60.6
Dinv34973 Davidia involucrata HOM05D000555 ORTHO05D000646 1.4e-71 274.2 358 53.9
Actinidia13191 Actinidia chinensis HOM05D000555 ORTHO05D000646 3.6e-67 259.6 356 52.2
Rhsim07G0164400 Rhododendron simsii HOM05D000555 ORTHO05D000646 4.9e-64 249.2 354 53.7
Hma1.2p1_0059F.1_g032630 Hydrangea macrophylla HOM05D000555 ORTHO05D000646 2.1e-62 243.8 364 48.4
Rhsim02G0215600 Rhododendron simsii HOM05D000555 ORTHO05D000646 8.1e-59 231.9 360 50.3
Cfa013070 Carpinus fangiana HOM05D000555 ORTHO05D000646 9.3e-55 218.4 343 46.6
Dinv40984 Davidia involucrata HOM05D000555 ORTHO05D000646 3.7e-51 206.5 359 46.8
Ciclev10007391m.g Citrus clementina HOM05D000555 ORTHO05D000646 9.0e-50 201.8 343 45.2
vmacro11258 Vaccinium macrocarpon HOM05D000555 ORTHO05D000646 2.5e-47 193.7 328 46.3
GSVIVG01035890001 Vitis vinifera HOM05D000555 ORTHO05D000646 4.2e-47 193.0 354 44.1
Prupe.1G392500 Prunus persica HOM05D000555 ORTHO05D000646 5.5e-47 192.6 348 44.0
TAR625G0860 Trochodendron aralioides HOM05D000555 ORTHO05D000646 2.1e-46 190.7 373 43.4
Actinidia23101 Actinidia chinensis HOM05D000555 ORTHO05D000646 2.7e-46 190.3 271 52.4
Lj7A732T27 Lonicera japonica HOM05D000555 ORTHO05D000646 1.8e-45 187.6 371 42.6
MD08G1057600 Malus domestica HOM05D000555 ORTHO05D000646 2.5e-44 183.7 346 40.8
Manes.16G128500 Manihot esculenta HOM05D000555 ORTHO05D000646 4.8e-43 179.5 352 41.5
Haze_21428 Corylus avellana HOM05D000555 ORTHO05D000646 3.1e-42 176.8 345 41.4
TAR636G1427 Trochodendron aralioides HOM05D000555 ORTHO05D000646 4.1e-42 176.4 376 43.1
CiPaw.07G229100 Carya illinoinensis HOM05D000555 ORTHO05D000646 2.0e-41 174.1 343 42.0
TAR383G0993 Trochodendron aralioides HOM05D000555 ORTHO05D000646 6.1e-38 162.5 388 39.4
CiPaw.08G006700 Carya illinoinensis HOM05D000555 ORTHO05D000646 1.0e-37 161.8 368 39.1
Manes.03G010000 Manihot esculenta HOM05D000555 ORTHO05D000646 2.5e-36 157.1 363 39.7
Atru.chr7.2535 Acer truncatum HOM05D000555 ORTHO05D000646 3.3e-36 156.8 352 38.9
Duzib168G1068 Durio zibethinus HOM05D000555 ORTHO05D000646 3.3e-36 156.8 344 41.0
Lj5g0020314 Lotus japonicus HOM05D000555 ORTHO05D000646 2.8e-35 153.7 357 38.9
Duzib150G0742 Durio zibethinus HOM05D000555 ORTHO05D000646 4.8e-35 152.9 343 39.7
Nn2g12328 Nelumbo nucifera HOM05D000555 ORTHO05D000646 1.4e-34 151.4 385 39.0
RcHm_v2.0_Chr6g0299571 Rosa chinensis HOM05D000555 ORTHO05D000646 2.0e-33 147.5 391 35.8
Potri.006G263300 Populus trichocarpa HOM05D000555 ORTHO05D000646 7.7e-33 145.6 270 45.2
Cc08_g00030 Coffea canephora HOM05D000555 ORTHO05D000646 2.9e-32 143.7 348 38.8
QL02p019527 Quercus lobata HOM05D000555 ORTHO05D000646 5.0e-32 142.9 343 39.1
Oeu056785.1 Olea europaea HOM05D000555 ORTHO05D000646 1.1e-31 141.7 351 35.3
Sabra06G0205500 Salix brachista HOM05D000555 ORTHO05D000646 1.1e-31 141.7 235 46.8
Gohir.A06G100800 Gossypium hirsutum HOM05D000555 ORTHO05D000646 1.4e-29 134.8 403 34.5
Oeu056786.1 Olea europaea HOM05D000555 ORTHO05D000646 1.4e-29 134.8 334 37.1
Nn8g39837 Nelumbo nucifera HOM05D000555 ORTHO05D000646 2.3e-29 134.0 375 38.9
Psat6g027440 Pisum sativum HOM05D000555 ORTHO05D000646 5.1e-29 132.9 372 41.7
Eucgr.C01945 Eucalyptus grandis HOM05D000555 ORTHO05D000646 2.0e-28 131.0 368 34.0
Medtr1g014270 Medicago truncatula HOM05D000555 ORTHO05D000646 2.6e-28 130.6 399 36.8
Gohir.D05G060800 Gossypium hirsutum HOM05D000555 ORTHO05D000646 4.4e-28 129.8 339 37.8
Peaxi162Scf00430g00515 Petunia axillaris HOM05D000555 ORTHO05D000646 4.4e-28 129.8 354 37.0
Duzib187G0516 Durio zibethinus HOM05D000555 ORTHO05D000646 7.4e-28 129.0 304 39.1
Lalb_Chr11g0063521 Lupinus albus HOM05D000555 ORTHO05D000646 1.7e-27 127.9 363 37.2
TWI63G1562 Tripterygium wilfordii HOM05D000555 ORTHO05D000646 1.7e-27 127.9 353 35.7
Glyma.06G062600 Glycine max HOM05D000555 ORTHO05D000646 4.8e-27 126.3 357 37.0
Gorai.009G062000 Gossypium raimondii HOM05D000555 ORTHO05D000646 6.3e-27 125.9 339 37.5
Potri.018G020400 Populus trichocarpa HOM05D000555 ORTHO05D000646 6.3e-27 125.9 238 47.5
FvH4_2g41000 Fragaria vesca HOM05D000555 ORTHO05D000646 1.1e-26 125.2 382 37.2
Thecc.09G016900 Theobroma cacao HOM05D000555 ORTHO05D000646 1.4e-26 124.8 341 40.5
FAN15G2747 Fragaria x ananassa HOM05D000555 ORTHO05D000646 3.1e-26 123.6 381 36.5
MD15G1038500 Malus domestica HOM05D000555 ORTHO05D000646 4.1e-26 123.2 307 35.5
Glyma.04G061700 Glycine max HOM05D000555 ORTHO05D000646 5.3e-26 122.9 352 36.9
MSTRG.26035 Avicennia marina HOM05D000555 ORTHO05D000646 9.1e-26 122.1 359 34.5
Sabra18G0022900 Salix brachista HOM05D000555 ORTHO05D000646 9.1e-26 122.1 240 44.2
Oeu012645.2 Olea europaea HOM05D000555 ORTHO05D000646 1.5e-25 121.3 359 32.6
Glyma.06G062800 Glycine max HOM05D000555 ORTHO05D000646 2.0e-25 120.9 362 37.6
Lalb_Chr23g0268251 Lupinus albus HOM05D000555 ORTHO05D000646 5.9e-25 119.4 351 35.6
Gohir.A07G031600 Gossypium hirsutum HOM05D000555 ORTHO05D000646 7.7e-25 119.0 339 35.1
FAN27G3064 Fragaria x ananassa HOM05D000555 ORTHO05D000646 1.3e-24 118.2 367 38.4
Gohir.A05G058700 Gossypium hirsutum HOM05D000555 ORTHO05D000646 1.7e-24 117.9 339 36.9
Phvul.009G087800 Phaseolus vulgaris HOM05D000555 ORTHO05D000646 2.2e-24 117.5 356 36.2
Phvul.009G088000 Phaseolus vulgaris HOM05D000555 ORTHO05D000646 2.9e-24 117.1 362 35.6
VMungo1309G2547 Vigna mungo HOM05D000555 ORTHO05D000646 2.9e-24 117.1 352 35.8
Ca_15773_v3 Cicer arietinum L. HOM05D000555 ORTHO05D000646 8.5e-24 115.5 358 35.8
Ca_30455_v3 Cicer arietinum L. HOM05D000555 ORTHO05D000646 8.5e-24 115.5 358 35.8
Gohir.A05G058600 Gossypium hirsutum HOM05D000555 ORTHO05D000646 8.5e-24 115.5 339 35.7
Gorai.009G061900 Gossypium raimondii HOM05D000555 ORTHO05D000646 8.5e-24 115.5 337 39.8
Gorai.010G118000 Gossypium raimondii HOM05D000555 ORTHO05D000646 8.5e-24 115.5 402 32.6
Gohir.D06G103000 Gossypium hirsutum HOM05D000555 ORTHO05D000646 4.2e-23 113.2 402 32.6
Gohir.D05G060700 Gossypium hirsutum HOM05D000555 ORTHO05D000646 1.6e-22 111.3 337 39.2
TWI34G0075 Tripterygium wilfordii HOM05D000555 ORTHO05D000646 3.6e-22 110.2 357 33.9
TWI32G0001 Tripterygium wilfordii HOM05D000555 ORTHO05D000646 1.4e-21 108.2 377 30.5
FAN20G0988 Fragaria x ananassa HOM05D000555 ORTHO05D000646 1.8e-21 107.8 398 33.7
arahy.Tifrunner.gnm1.ann1.QZG3GX Arachis hypogaea HOM05D000555 ORTHO05D000646 2.3e-21 107.5 338 33.7
ECA240G0733 Erigeron canadensis HOM05D000555 ORTHO05D000646 2.3e-21 107.5 289 35.6
arahy.Tifrunner.gnm1.ann1.I3ML28 Arachis hypogaea HOM05D000555 ORTHO05D000646 6.7e-21 105.9 339 33.3
TPR.G38929 Trifolium pratense HOM05D000555 ORTHO05D000646 3.3e-20 103.6 259 40.2
MBI15_g07758_MAGBIO Magnolia biondii HOM05D000555 ORTHO05D000646 5.7e-20 102.8 382 35.3
Nitab4.5_0008698g0010 Nicotiana tabacum HOM05D000555 ORTHO05D000646 5.7e-20 102.8 227 40.1
Sopen06g024230 Solanum pennellii HOM05D000555 ORTHO05D000646 9.7e-20 102.1 346 35.0
Gohir.D07G035400 Gossypium hirsutum HOM05D000555 ORTHO05D000646 1.3e-19 101.7 339 33.3
Glyma.04G061800 Glycine max HOM05D000555 ORTHO05D000646 1.7e-19 101.3 361 36.0
Nitab4.5_0000486g0120 Nicotiana tabacum HOM05D000555 ORTHO05D000646 1.7e-19 101.3 356 32.9
Peaxi162Scf00632g00022 Petunia axillaris HOM05D000555 ORTHO05D000646 2.2e-19 100.9 350 33.1
Nitab4.5_0004637g0080 Nicotiana tabacum HOM05D000555 ORTHO05D000646 8.2e-19 99.0 353 32.0
Migut.A00001 Erythranthe guttata HOM05D000555 ORTHO05D000646 1.4e-18 98.2 366 33.6
Gorai.001G037200 Gossypium raimondii HOM05D000555 ORTHO05D000646 1.8e-18 97.8 339 33.0
Solyc06g065710.3 Solanum lycopersicum HOM05D000555 ORTHO05D000646 3.1e-18 97.1 346 34.1
Hund03457 Selenicereus undatus HOM05D000555 ORTHO05D000646 4.1e-18 96.7 371 30.5
Eucgr.C02662 Eucalyptus grandis HOM05D000555 ORTHO05D000646 3.5e-17 93.6 348 32.2
Hund19590 Selenicereus undatus HOM05D000555 ORTHO05D000646 2.2e-16 90.9 349 31.2
Nitab4.5_0003976g0010 Nicotiana tabacum HOM05D000555 ORTHO05D000646 7.2e-15 85.9 351 31.1
Phvul.009G087900 Phaseolus vulgaris HOM05D000555 ORTHO05D000646 1.2e-14 85.1 321 33.3
COL.COLO4_03454 Corchorus olitorius HOM05D000555 ORTHO05D000646 2.1e-14 84.3 304 33.9
Lsat_1_v5_gn_6_77201 Lactuca sativa HOM05D000555 ORTHO05D000646 4.7e-14 83.2 428 32.0
GSVIVG01023587001 Vitis vinifera HOM05D000555 ORTHO05D000646 8.0e-14 82.4 374 33.4
TAR626G1146 Trochodendron aralioides HOM05D000555 ORTHO05D000646 1.8e-13 81.3 263 34.2
CSS0011512 Camellia sinensis var. sinensis HOM05D000555 ORTHO05D000646 2.3e-13 80.9 365 31.2
MELO3C011294.2 Cucumis melo HOM05D000555 ORTHO05D000646 3.0e-13 80.5 256 40.6
Ca_13057_v3 Cicer arietinum L. HOM05D000555 ORTHO05D000646 8.8e-13 79.0 262 35.9
Haze_16661 Corylus avellana HOM05D000555 ORTHO05D000646 1.2e-12 78.6 271 33.9
Sc23g0006420 Simmondsia chinensis HOM05D000555 ORTHO05D000646 1.5e-12 78.2 260 33.1
Sed0023061 Sechium edule HOM05D000555 ORTHO05D000646 2.0e-12 77.8 350 32.3
Lalb_Chr14g0361791 Lupinus albus HOM05D000555 ORTHO05D000646 3.3e-12 77.0 295 33.9
Sc09g0010550 Simmondsia chinensis HOM05D000555 ORTHO05D000646 7.5e-12 75.9 199 36.2
Glyma.06G062700 Glycine max HOM05D000555 ORTHO05D000646 3.7e-11 73.6 320 29.7
PGR044G2569 Punica granatum HOM05D000555 ORTHO05D000646 8.2e-11 72.4 354 28.5
VMungo1309G2935 Vigna mungo HOM05D000555 ORTHO05D000646 1.1e-10 72.0 353 30.3
Ciclev10024823m.g Citrus clementina HOM05D000555 ORTHO05D000646 1.4e-10 71.6 337 28.5
Lalb_Chr22g0361371 Lupinus albus HOM05D000555 ORTHO05D000646 2.4e-10 70.9 312 34.0
Dinv21407 Davidia involucrata HOM05D000555 ORTHO05D000646 4.1e-10 70.1 367 30.2
CsaV3_2G032450 Cucumis sativus L. HOM05D000555 ORTHO05D000646 5.3e-10 69.7 253 36.0
Lj1g0004939 Lotus japonicus HOM05D000555 ORTHO05D000646 5.3e-10 69.7 360 30.3
AUR62031599 Chenopodium quinoa HOM05D000555 ORTHO05D000646 7.0e-10 69.3 346 28.6
Aqoxy7G03446 Aquilegia oxysepala HOM05D000555 ORTHO05D000646 1.6e-09 68.2 356 36.2
AUR62012473 Chenopodium quinoa HOM05D000555 ORTHO05D000646 2.7e-09 67.4 333 28.5
Sp7g29700 Schrenkiella parvula HOM05D000555 ORTHO05D000646 2.7e-09 67.4 361 27.7
QL05p035479 Quercus lobata HOM05D000555 ORTHO05D000646 3.5e-09 67.0 353 28.6
SGA_v2.0_scaffold64G22020 Striga asiatica HOM05D000555 ORTHO05D000646 6.5e-08 62.8 394 32.7
Thhalv10024366m.g Eutrema salsugineum HOM05D000555 ORTHO05D000646 8.5e-08 62.4 370 29.7
SGA_v2.0_scaffold20G09079 Striga asiatica HOM05D000555 ORTHO05D000646 1.2e-06 58.5 207 35.3
MSTRG.11595 Avicennia marina HOM05D000555 ORTHO05D000646 2.1e-06 57.8 354 28.0
CAN.G199.62 Capsicum annuum HOM05D000555 ORTHO05D000646 2.7e-06 57.4 349 29.2
Ah.16g104990 Amaranthus hybridus HOM05D000555 ORTHO05D000646 3.6e-06 57.0 347 27.4


User provided reference genes

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