Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049778 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D033876 1.1e-83 313.2 154 100.0
CSS0021770 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D033876 1.6e-56 223.0 177 72.9
Rhsim10G0094500 Rhododendron simsii HOM05D000032 ORTHO05D007443 1.1e-14 84.0 81 61.7
CSS0045534 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007443 9.6e-14 80.9 80 60.0
Lj4C166T2 Lonicera japonica HOM05D000032 ORTHO05D007443 9.6e-14 80.9 92 53.3
vmacro04601 Vaccinium macrocarpon HOM05D000032 ORTHO05D007443 1.3e-13 80.5 81 59.3
Actinidia36419 Actinidia chinensis HOM05D000032 ORTHO05D007443 1.6e-13 80.1 81 58.0
Atru.chr3.1066 Acer truncatum HOM05D000032 ORTHO05D007443 4.0e-12 75.5 81 55.6
Hund16419 Selenicereus undatus HOM05D000032 ORTHO05D007443 4.0e-12 75.5 81 54.3
Cfa006775 Carpinus fangiana HOM05D000032 ORTHO05D007443 1.2e-11 73.9 95 50.5
COL.COLO4_11621 Corchorus olitorius HOM05D000032 ORTHO05D007443 1.2e-11 73.9 81 51.9
CiPaw.08G171600 Carya illinoinensis HOM05D000032 ORTHO05D007443 1.5e-11 73.6 81 53.1
Haze_03984 Corylus avellana HOM05D000032 ORTHO05D007443 1.5e-11 73.6 95 50.5
GSVIVG01007277001 Vitis vinifera HOM05D000032 ORTHO05D007443 2.0e-11 73.2 81 54.3
QL06p038783 Quercus lobata HOM05D000032 ORTHO05D007443 2.6e-11 72.8 95 50.5
Sed0005463 Sechium edule HOM05D000032 ORTHO05D007443 4.5e-11 72.0 185 34.1
CiPaw.08G149900 Carya illinoinensis HOM05D000032 ORTHO05D007443 5.8e-11 71.6 81 51.9
Thecc.01G077000 Theobroma cacao HOM05D000032 ORTHO05D007443 5.8e-11 71.6 81 50.6
Ciclev10025201m.g Citrus clementina HOM05D000032 ORTHO05D007443 9.9e-11 70.9 81 50.6
MBI16_g35719_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D007443 2.9e-10 69.3 81 51.9
TAR381G1241 Trochodendron aralioides HOM05D000032 ORTHO05D007443 2.9e-10 69.3 95 47.4
Potri.007G021800 Populus trichocarpa HOM05D000032 ORTHO05D007443 3.8e-10 68.9 81 53.1
MSTRG.23651 Avicennia marina HOM05D000032 ORTHO05D007443 4.9e-10 68.6 80 51.2
Cc07_g07410 Coffea canephora HOM05D000032 ORTHO05D007443 4.9e-10 68.6 95 47.4
HanXRQChr11g0323571 Helianthus annuus HOM05D000032 ORTHO05D007443 4.9e-10 68.6 81 51.9
THA.LOC104807641 Tarenaya hassleriana HOM05D000032 ORTHO05D007443 4.9e-10 68.6 81 51.9
Prupe.6G216200 Prunus persica HOM05D000032 ORTHO05D007443 6.4e-10 68.2 80 53.8
Sed0018251 Sechium edule HOM05D000032 ORTHO05D007443 6.4e-10 68.2 185 33.0
ClCG01G017830 Citrullus lanatus HOM05D000032 ORTHO05D007443 8.4e-10 67.8 185 33.5
Rhsim02G0087100 Rhododendron simsii HOM05D000032 ORTHO05D007443 8.4e-10 67.8 93 48.4
AUR62007544 Chenopodium quinoa HOM05D000032 ORTHO05D007443 1.1e-09 67.4 80 50.0
Ca_10121_v3 Cicer arietinum L. HOM05D000032 ORTHO05D007443 1.1e-09 67.4 81 51.9
MELO3C007659.2 Cucumis melo HOM05D000032 ORTHO05D007443 1.1e-09 67.4 185 32.4
Oeu014318.2 Olea europaea HOM05D000032 ORTHO05D007443 1.4e-09 67.0 81 50.6
PGR102G1941 Punica granatum HOM05D000032 ORTHO05D007443 1.4e-09 67.0 80 51.2
Manes.13G108500 Manihot esculenta HOM05D000032 ORTHO05D007443 1.9e-09 66.6 83 54.2
Peaxi162Scf00423g00221 Petunia axillaris HOM05D000032 ORTHO05D007443 1.9e-09 66.6 81 49.4
CsaV3_6G044370 Cucumis sativus L. HOM05D000032 ORTHO05D007443 3.2e-09 65.9 185 31.9
Eucgr.H02337 Eucalyptus grandis HOM05D000032 ORTHO05D007443 5.5e-09 65.1 81 49.4
Solyc02g070100.3 Solanum lycopersicum HOM05D000032 ORTHO05D007443 5.5e-09 65.1 81 49.4
Sopen02g019260 Solanum pennellii HOM05D000032 ORTHO05D007443 5.5e-09 65.1 81 49.4
PGSC0003DMG400021177 Solanum tuberosum HOM05D000032 ORTHO05D007443 5.5e-09 65.1 81 49.4
PSO541G1009 Papaver somniferum HOM05D000032 ORTHO05D007443 7.1e-09 64.7 81 48.1
PSO675G5622 Papaver somniferum HOM05D000032 ORTHO05D007443 7.1e-09 64.7 81 48.1
Psat6g149960 Pisum sativum HOM05D000032 ORTHO05D007443 7.1e-09 64.7 81 50.6
CAN.G79.11 Capsicum annuum HOM05D000032 ORTHO05D007443 9.3e-09 64.3 81 49.4
Dinv23050 Davidia involucrata HOM05D000032 ORTHO05D007443 1.2e-08 63.9 41 73.2
Lj5g0020960 Lotus japonicus HOM05D000032 ORTHO05D007443 1.2e-08 63.9 81 50.6
SGA_v2.0_scaffold121G33068 Striga asiatica HOM05D000032 ORTHO05D007443 1.2e-08 63.9 80 52.5
Ah.02g125290 Amaranthus hybridus HOM05D000032 ORTHO05D007443 1.6e-08 63.5 188 31.4
AUR62004035 Chenopodium quinoa HOM05D000032 ORTHO05D007443 1.6e-08 63.5 80 48.8
TWI74G1593 Tripterygium wilfordii HOM05D000032 ORTHO05D007443 1.6e-08 63.5 81 48.1
HanXRQChr10g0318711 Helianthus annuus HOM05D000032 ORTHO05D007443 2.1e-08 63.2 81 51.9
Nn5g30290 Nelumbo nucifera HOM05D000032 ORTHO05D007443 2.1e-08 63.2 95 43.2
Aqoxy3G01532 Aquilegia oxysepala HOM05D000032 ORTHO05D007443 2.7e-08 62.8 80 47.5
MD02G1190200 Malus domestica HOM05D000032 ORTHO05D007443 3.5e-08 62.4 80 47.5
CANSAT64G0745 Cannabis sativa HOM05D000032 ORTHO05D007443 4.6e-08 62.0 95 46.3
Medtr1g083130 Medicago truncatula HOM05D000032 ORTHO05D007443 4.6e-08 62.0 81 49.4
BcaB03g11802 Brassica carinata HOM05D000032 ORTHO05D007443 7.9e-08 61.2 177 31.1
Glyma.10G152900 Glycine max HOM05D000032 ORTHO05D007443 1.0e-07 60.8 81 48.1
Glyma.20G235400 Glycine max HOM05D000032 ORTHO05D007443 1.8e-07 60.1 95 45.3
Gohir.A11G211800 Gossypium hirsutum HOM05D000032 ORTHO05D007443 1.8e-07 60.1 81 44.4
Gohir.D11G211100 Gossypium hirsutum HOM05D000032 ORTHO05D007443 1.8e-07 60.1 81 44.4
Gorai.007G226800 Gossypium raimondii HOM05D000032 ORTHO05D007443 1.8e-07 60.1 81 44.4
Lalb_Chr09g0323751 Lupinus albus HOM05D000032 ORTHO05D007443 1.8e-07 60.1 81 48.1
Lsat_1_v5_gn_4_158421 Lactuca sativa HOM05D000032 ORTHO05D007443 2.3e-07 59.7 81 45.7
BcaNung00645 Brassica carinata HOM05D000032 ORTHO05D007443 3.9e-07 58.9 82 42.7
C01p03900 Brassica napus HOM05D000032 ORTHO05D007443 3.9e-07 58.9 82 42.7
BolC1t00383H Brassica oleracea HOM05D000032 ORTHO05D007443 3.9e-07 58.9 82 42.7
VMungo0720G2333 Vigna mungo HOM05D000032 ORTHO05D007443 3.9e-07 58.9 80 46.2
arahy.Tifrunner.gnm1.ann1.11GZ1T Arachis hypogaea HOM05D000032 ORTHO05D007443 6.7e-07 58.2 78 48.7
arahy.Tifrunner.gnm1.ann1.318AHN Arachis hypogaea HOM05D000032 ORTHO05D007443 6.7e-07 58.2 78 48.7
CDE01G0309 Ceratophyllum demersum HOM05D000032 ORTHO05D007443 6.7e-07 58.2 81 46.9
A01p03610 Brassica napus HOM05D000032 ORTHO05D007443 8.7e-07 57.8 82 41.5
BraA01t00347Z Brassica rapa HOM05D000032 ORTHO05D007443 8.7e-07 57.8 82 41.5
Duzib147G1507 Durio zibethinus HOM05D000032 ORTHO05D007443 8.7e-07 57.8 41 63.4
arahy.Tifrunner.gnm1.ann1.MR2VJ3 Arachis hypogaea HOM05D000032 ORTHO05D007443 1.1e-06 57.4 78 47.4
Migut.H00321 Erythranthe guttata HOM05D000032 ORTHO05D007443 1.1e-06 57.4 82 45.1
Sabra07G0018900 Salix brachista HOM05D000032 ORTHO05D007443 1.1e-06 57.4 81 49.4
Sp7g32660 Schrenkiella parvula HOM05D000032 ORTHO05D007443 1.1e-06 57.4 82 42.7
Nitab4.5_0001225g0240 Nicotiana tabacum HOM05D000032 ORTHO05D007443 1.5e-06 57.0 177 31.6
Nitab4.5_0010329g0010 Nicotiana tabacum HOM05D000032 ORTHO05D007443 1.5e-06 57.0 177 31.6
Thhalv10013368m.g Eutrema salsugineum HOM05D000032 ORTHO05D007443 1.9e-06 56.6 82 43.9
Thhalv10024759m.g Eutrema salsugineum HOM05D000032 ORTHO05D007443 1.9e-06 56.6 82 43.9
Aa31LG2G15620 Aethionema arabicum HOM05D000032 ORTHO05D007443 2.5e-06 56.2 81 44.4
Rhsim02G0062600 Rhododendron simsii HOM05D000032 ORTHO05D033876 2.5e-06 56.2 42 66.7
HPP92_011749 Vanilla planifolia HOM05D000032 ORTHO05D007443 5.6e-06 55.1 184 30.4
TPR.G6058 Trifolium pratense HOM05D000032 ORTHO05D007443 7.4e-06 54.7 81 46.9
RcHm_v2.0_Chr7g0222281 Rosa chinensis HOM05D000032 ORTHO05D007443 9.6e-06 54.3 82 41.5


User provided reference genes

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