Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049491 Camellia sinensis var. sinensis HOM05D001552 ORTHO05D003294 6.6e-31 136.7 69 100.0
CSS0040061 Camellia sinensis var. sinensis HOM05D001552 ORTHO05D003294 2.3e-23 111.7 57 98.2
CiPaw.11G041200 Carya illinoinensis HOM05D001552 ORTHO05D003294 2.4e-17 91.7 63 74.6
CiPaw.16G013700 Carya illinoinensis HOM05D001552 ORTHO05D003294 2.4e-17 91.7 63 74.6
CSS0002929 Camellia sinensis var. sinensis HOM05D001552 ORTHO05D003294 4.2e-17 90.9 63 73.0
Cpa.g.sc21.188 Carica papaya HOM05D001552 ORTHO05D003294 4.2e-17 90.9 63 73.0
PGR042G3030 Punica granatum HOM05D001552 ORTHO05D003294 4.2e-17 90.9 63 73.0
PGR122G0003 Punica granatum HOM05D001552 ORTHO05D003294 4.2e-17 90.9 63 73.0
arahy.Tifrunner.gnm1.ann1.41AL06 Arachis hypogaea HOM05D001552 ORTHO05D003294 7.1e-17 90.1 63 73.0
arahy.Tifrunner.gnm1.ann1.I67LVW Arachis hypogaea HOM05D001552 ORTHO05D003294 7.1e-17 90.1 63 73.0
CiPaw.15G017000 Carya illinoinensis HOM05D001552 ORTHO05D003294 9.3e-17 89.7 63 71.4
Actinidia10656 Actinidia chinensis HOM05D001552 ORTHO05D003294 1.2e-16 89.4 63 71.4
TPR.G30006 Trifolium pratense HOM05D001552 ORTHO05D003294 1.6e-16 89.0 63 73.0
Dinv25851 Davidia involucrata HOM05D001552 ORTHO05D003294 2.1e-16 88.6 63 73.0
GSVIVG01034895001 Vitis vinifera HOM05D001552 ORTHO05D003294 2.1e-16 88.6 67 68.7
Medtr1g099000 Medicago truncatula HOM05D001552 ORTHO05D003294 3.5e-16 87.8 63 71.4
Sc15g0007410 Simmondsia chinensis HOM05D001552 ORTHO05D003294 3.5e-16 87.8 63 69.8
BcaB05g25013 Brassica carinata HOM05D001552 ORTHO05D003294 4.6e-16 87.4 62 67.7
BcaC03g15705 Brassica carinata HOM05D001552 ORTHO05D003294 4.6e-16 87.4 62 67.7
A02p20910 Brassica napus HOM05D001552 ORTHO05D003294 4.6e-16 87.4 62 67.7
BolC2t09426H Brassica oleracea HOM05D001552 ORTHO05D003294 4.6e-16 87.4 62 67.7
BraA02t07123Z Brassica rapa HOM05D001552 ORTHO05D003294 4.6e-16 87.4 62 67.7
CARHR070350 Cardamine hirsuta HOM05D001552 ORTHO05D003294 4.6e-16 87.4 62 67.7
Cfa010518 Carpinus fangiana HOM05D001552 ORTHO05D003294 4.6e-16 87.4 63 71.4
Eucgr.F02713 Eucalyptus grandis HOM05D001552 ORTHO05D003294 4.6e-16 87.4 63 68.3
THA.LOC104813715 Tarenaya hassleriana HOM05D001552 ORTHO05D003294 6.0e-16 87.0 62 69.4
HPP92_007723 Vanilla planifolia HOM05D001552 ORTHO05D003294 6.0e-16 87.0 61 72.1
C02p32730 Brassica napus HOM05D001552 ORTHO05D003294 7.8e-16 86.7 62 66.1
Cc10_g14600 Coffea canephora HOM05D001552 ORTHO05D003294 7.8e-16 86.7 61 72.1
Dinv01062 Davidia involucrata HOM05D001552 ORTHO05D003294 7.8e-16 86.7 63 71.4
Thhalv10018018m.g Eutrema salsugineum HOM05D001552 ORTHO05D003294 7.8e-16 86.7 62 67.7
Glyma.20G166200 Glycine max HOM05D001552 ORTHO05D003294 7.8e-16 86.7 63 69.8
Phvul.007G079200 Phaseolus vulgaris HOM05D001552 ORTHO05D003294 7.8e-16 86.7 63 69.8
Atru.chr12.1261 Acer truncatum HOM05D001552 ORTHO05D003294 1.0e-15 86.3 63 68.3
Atru.chr12.1264 Acer truncatum HOM05D001552 ORTHO05D003294 1.0e-15 86.3 63 68.3
Atru.chr13.2172 Acer truncatum HOM05D001552 ORTHO05D003294 1.0e-15 86.3 63 68.3
Ca_19934_v3 Cicer arietinum L. HOM05D001552 ORTHO05D003294 1.0e-15 86.3 63 69.8
Haze_03453 Corylus avellana HOM05D001552 ORTHO05D003294 1.0e-15 86.3 63 69.8
Haze_03458 Corylus avellana HOM05D001552 ORTHO05D003294 1.0e-15 86.3 63 69.8
Nn5g30352 Nelumbo nucifera HOM05D001552 ORTHO05D003294 1.0e-15 86.3 63 68.3
Duzib248G1523 Durio zibethinus HOM05D001552 ORTHO05D003294 1.3e-15 85.9 61 72.1
Thecc.01G143000 Theobroma cacao HOM05D001552 ORTHO05D003294 1.3e-15 85.9 61 72.1
AT1G76810 Arabidopsis thaliana HOM05D001552 ORTHO05D003294 1.7e-15 85.5 62 69.4
MBI14_g25244_MAGBIO Magnolia biondii HOM05D001552 ORTHO05D003294 1.7e-15 85.5 63 68.3
Psat6g193320 Pisum sativum HOM05D001552 ORTHO05D003294 1.7e-15 85.5 63 73.0
Rhsim06G0017900 Rhododendron simsii HOM05D001552 ORTHO05D003294 1.7e-15 85.5 63 69.8
Sc15g0007440 Simmondsia chinensis HOM05D001552 ORTHO05D003294 1.7e-15 85.5 61 68.9
AL2G36950 Arabidopsis lyrata HOM05D001552 ORTHO05D003294 2.3e-15 85.1 62 69.4
Glyma.10G225800 Glycine max HOM05D001552 ORTHO05D003294 2.3e-15 85.1 63 68.3
Lalb_Chr06g0161531 Lupinus albus HOM05D001552 ORTHO05D003294 2.3e-15 85.1 63 71.4
Aa31LG4G6880 Aethionema arabicum HOM05D001552 ORTHO05D003294 3.9e-15 84.3 62 67.7
Carub.0002s2372 Capsella rubella HOM05D001552 ORTHO05D003294 3.9e-15 84.3 62 67.7
Thecc.01G142700 Theobroma cacao HOM05D001552 ORTHO05D003294 5.1e-15 84.0 61 70.5
CAN.G1025.6 Capsicum annuum HOM05D001552 ORTHO05D003294 6.6e-15 83.6 67 64.2
Nn1g04789 Nelumbo nucifera HOM05D001552 ORTHO05D003294 6.6e-15 83.6 63 68.3
Aqoxy5G01312 Aquilegia oxysepala HOM05D001552 ORTHO05D003294 8.7e-15 83.2 63 66.7
Ciclev10000034m.g Citrus clementina HOM05D001552 ORTHO05D003294 8.7e-15 83.2 63 66.7
Duzib147G0536 Durio zibethinus HOM05D001552 ORTHO05D003294 1.1e-14 82.8 61 70.5
TAR381G0343 Trochodendron aralioides HOM05D001552 ORTHO05D003294 1.1e-14 82.8 63 65.1
Lj5g0023968 Lotus japonicus HOM05D001552 ORTHO05D003294 1.5e-14 82.4 67 64.2
Manes.02G178500 Manihot esculenta HOM05D001552 ORTHO05D003294 1.5e-14 82.4 61 67.2
Lj9C478T4 Lonicera japonica HOM05D001552 ORTHO05D003294 1.9e-14 82.0 63 68.3
Sp5g31970 Schrenkiella parvula HOM05D001552 ORTHO05D003294 1.9e-14 82.0 62 64.5
Hund21082 Selenicereus undatus HOM05D001552 ORTHO05D003294 2.5e-14 81.6 63 66.7
ECA247G0581 Erigeron canadensis HOM05D001552 ORTHO05D003294 3.3e-14 81.3 63 69.8
PSO541G0812 Papaver somniferum HOM05D001552 ORTHO05D003294 3.3e-14 81.3 63 63.5
PSO675G0197 Papaver somniferum HOM05D001552 ORTHO05D003294 3.3e-14 81.3 63 63.5
Potri.019G103600 Populus trichocarpa HOM05D001552 ORTHO05D003294 3.3e-14 81.3 63 65.1
Gohir.A04G138500 Gossypium hirsutum HOM05D001552 ORTHO05D003294 4.3e-14 80.9 61 67.2
Lsat_1_v5_gn_1_6540 Lactuca sativa HOM05D001552 ORTHO05D003294 4.3e-14 80.9 63 66.7
Prupe.8G027900 Prunus persica HOM05D001552 ORTHO05D003294 4.3e-14 80.9 61 65.6
Solyc06g054400.3 Solanum lycopersicum HOM05D001552 ORTHO05D003294 4.3e-14 80.9 67 62.7
Sopen03g011870 Solanum pennellii HOM05D001552 ORTHO05D003294 4.3e-14 80.9 67 62.7
Sopen06g019480 Solanum pennellii HOM05D001552 ORTHO05D003294 4.3e-14 80.9 67 62.7
HanXRQChr16g0503421 Helianthus annuus HOM05D001552 ORTHO05D003294 5.6e-14 80.5 63 68.3
FAN27G2666 Fragaria x ananassa HOM05D001552 ORTHO05D003294 7.3e-14 80.1 63 65.1
HanXRQChr02g0040771 Helianthus annuus HOM05D001552 ORTHO05D003294 7.3e-14 80.1 63 66.7
Sed0008952 Sechium edule HOM05D001552 ORTHO05D003294 7.3e-14 80.1 63 65.1
DCAR_014429 Daucus carota HOM05D001552 ORTHO05D003294 1.3e-13 79.3 63 61.9
Nitab4.5_0006298g0030 Nicotiana tabacum HOM05D001552 ORTHO05D003294 1.3e-13 79.3 63 63.5
Sed0012093 Sechium edule HOM05D001552 ORTHO05D003294 1.3e-13 79.3 63 63.5
ClCG09G009640 Citrullus lanatus HOM05D001552 ORTHO05D003294 1.6e-13 79.0 63 63.5
MELO3C023716.2 Cucumis melo HOM05D001552 ORTHO05D003294 1.6e-13 79.0 63 63.5
CsaV3_7G025160 Cucumis sativus L. HOM05D001552 ORTHO05D003294 1.6e-13 79.0 63 63.5
MD05G1023200 Malus domestica HOM05D001552 ORTHO05D003294 1.6e-13 79.0 65 63.1
MD10G1024100 Malus domestica HOM05D001552 ORTHO05D003294 1.6e-13 79.0 65 63.1
Potri.012G039200 Populus trichocarpa HOM05D001552 ORTHO05D003294 1.6e-13 79.0 63 61.9
PGSC0003DMG400030793 Solanum tuberosum HOM05D001552 ORTHO05D003294 1.6e-13 79.0 67 61.2
TAR625G0242 Trochodendron aralioides HOM05D001552 ORTHO05D003294 1.6e-13 79.0 62 61.3
Nitab4.5_0011697g0010 Nicotiana tabacum HOM05D001552 ORTHO05D003294 2.1e-13 78.6 67 62.7
Solyc03g058350.4 Solanum lycopersicum HOM05D001552 ORTHO05D003294 2.1e-13 78.6 67 61.2
Sopen03g015610 Solanum pennellii HOM05D001552 ORTHO05D003294 2.1e-13 78.6 67 61.2
Atru.chr3.1471 Acer truncatum HOM05D001552 ORTHO05D003294 3.6e-13 77.8 63 66.7
FvH4_2g13940 Fragaria vesca HOM05D001552 ORTHO05D003294 3.6e-13 77.8 61 63.9
FAN15G1427 Fragaria x ananassa HOM05D001552 ORTHO05D003294 3.6e-13 77.8 61 63.9
FAN20G2090 Fragaria x ananassa HOM05D001552 ORTHO05D003294 3.6e-13 77.8 61 63.9
FAN24G0455 Fragaria x ananassa HOM05D001552 ORTHO05D003294 3.6e-13 77.8 61 63.9
Nitab4.5_0000113g0130 Nicotiana tabacum HOM05D001552 ORTHO05D003294 3.6e-13 77.8 62 64.5
Oeu036723.4 Olea europaea HOM05D001552 ORTHO05D003294 3.6e-13 77.8 63 66.7
RcHm_v2.0_Chr6g0275701 Rosa chinensis HOM05D001552 ORTHO05D003294 3.6e-13 77.8 61 63.9
Nitab4.5_0000971g0010 Nicotiana tabacum HOM05D001552 ORTHO05D003294 4.8e-13 77.4 63 61.9
GSVIVG01015853001 Vitis vinifera HOM05D001552 ORTHO05D013172 4.8e-13 77.4 62 67.7
Aqoxy5G00841 Aquilegia oxysepala HOM05D001552 ORTHO05D003294 6.2e-13 77.0 63 61.9
Nitab4.5_0002649g0090 Nicotiana tabacum HOM05D001552 ORTHO05D003294 6.2e-13 77.0 67 61.2
Rhsim03G0057900 Rhododendron simsii HOM05D002098 ORTHO05D001998 6.2e-13 77.0 62 64.5
Sopen04g036040 Solanum pennellii HOM05D001552 ORTHO05D003294 6.2e-13 77.0 63 63.5
CDE02G3560 Ceratophyllum demersum HOM05D001552 ORTHO05D003294 1.4e-12 75.9 61 60.7
Os05g0592600 Oryza sativa ssp. japonica HOM05D001552 ORTHO05D003294 1.4e-12 75.9 61 59.0
Peaxi162Scf00253g00825 Petunia axillaris HOM05D001552 ORTHO05D003294 2.4e-12 75.1 67 59.7
Cc01_g07350 Coffea canephora HOM05D001552 ORTHO05D003294 3.1e-12 74.7 63 61.9
PGSC0003DMG400004211 Solanum tuberosum HOM05D001387 ORTHO05D001250 3.1e-12 74.7 67 56.7
AUR62005931 Chenopodium quinoa HOM05D001552 ORTHO05D003294 4.0e-12 74.3 65 61.5
AUR62005934 Chenopodium quinoa HOM05D001552 ORTHO05D003294 4.0e-12 74.3 65 61.5
Peaxi162Scf00156g00214 Petunia axillaris HOM05D001552 ORTHO05D003294 4.0e-12 74.3 67 59.7
TWI32G1172 Tripterygium wilfordii HOM05D001552 ORTHO05D003294 4.0e-12 74.3 61 60.7
Rhsim02G0211400 Rhododendron simsii HOM05D002794 ORTHO05D003763 5.3e-12 73.9 71 56.3
CDE04G0364 Ceratophyllum demersum HOM05D001552 ORTHO05D003294 6.9e-12 73.6 61 59.0
Thhalv10006634m.g Eutrema salsugineum HOM05D001552 ORTHO05D003294 6.9e-12 73.6 62 58.1
Zm00001eb345280 Zea mays HOM05D001552 ORTHO05D003294 6.9e-12 73.6 63 57.1
CAN.G371.7 Capsicum annuum HOM05D001552 ORTHO05D003294 9.0e-12 73.2 63 58.7
Rhsim02G0210400 Rhododendron simsii HOM05D001552 ORTHO05D003294 9.0e-12 73.2 63 66.7
Sed0008881 Sechium edule HOM05D001552 ORTHO05D003294 9.0e-12 73.2 63 60.3
SEGI_17464 Sequoiadendron giganteum HOM05D001552 ORTHO05D003294 2.6e-11 71.6 61 57.4
AL2G36870 Arabidopsis lyrata HOM05D001552 ORTHO05D003294 3.4e-11 71.2 60 58.3
EL10Ac7g16024 Beta vulgaris HOM05D001552 ORTHO05D003294 4.5e-11 70.9 65 58.5
Medtr1g098970 Medicago truncatula HOM05D001552 ORTHO05D003294 4.5e-11 70.9 75 54.7
Pp3c4_28500 Physcomitrium patens HOM05D001552 ORTHO05D003294 4.5e-11 70.9 61 57.4
Carub.0002s2359 Capsella rubella HOM05D001552 ORTHO05D003294 5.8e-11 70.5 60 56.7
FAN03G2186 Fragaria x ananassa HOM05D001552 ORTHO05D003294 7.6e-11 70.1 73 47.9
PGSC0003DMG400027861 Solanum tuberosum HOM05D001552 ORTHO05D003294 9.9e-11 69.7 69 56.5
SalBow6G3186 Salvia bowleyana HOM05D001552 ORTHO05D003294 4.9e-10 67.4 61 57.4
SGA_v2.0_scaffold166G38394 Striga asiatica HOM05D001552 ORTHO05D003294 4.9e-10 67.4 61 57.4
Mapoly0112s0026 Marchantia polymorpha HOM05D001552 ORTHO05D003294 1.1e-09 66.2 61 50.8
AT1G21160 Arabidopsis thaliana HOM05D001552 ORTHO05D003294 2.4e-09 65.1 62 53.2
Ciclev10000191m.g Citrus clementina HOM05D001552 ORTHO05D003294 3.2e-09 64.7 61 52.5
SMO356G0283 Selaginella moellendorffii HOM05D001552 ORTHO05D003294 5.4e-09 63.9 46 60.9
Carub.0001s2060 Capsella rubella HOM05D001552 ORTHO05D003294 7.1e-09 63.5 60 56.7
SGA_v2.0_scaffold11G05845 Striga asiatica HOM05D001552 ORTHO05D003294 7.1e-09 63.5 61 54.1
A08p29040 Brassica napus HOM05D001552 ORTHO05D003294 9.3e-09 63.2 62 59.7
BraA08t34839Z Brassica rapa HOM05D001552 ORTHO05D003294 9.3e-09 63.2 62 59.7
Migut.N02939 Erythranthe guttata HOM05D001552 ORTHO05D003294 1.2e-08 62.8 61 55.7
BcaC07g39081 Brassica carinata HOM05D001552 ORTHO05D003294 1.6e-08 62.4 62 58.1
C08p20660 Brassica napus HOM05D001552 ORTHO05D003294 1.6e-08 62.4 62 58.1
BolC8t49698H Brassica oleracea HOM05D001552 ORTHO05D003294 1.6e-08 62.4 62 58.1
AL1G34220 Arabidopsis lyrata HOM05D001552 ORTHO05D003294 1.3e-07 59.3 62 53.2
Haze_23204 Corylus avellana HOM05D001552 ORTHO05D003294 2.3e-07 58.5 64 57.8
Migut.B00231 Erythranthe guttata HOM05D001552 ORTHO05D003294 2.3e-07 58.5 61 50.8
HanXRQChr10g0306561 Helianthus annuus HOM05D001552 ORTHO05D003294 3.9e-07 57.8 61 49.2
BcaB03g12829 Brassica carinata HOM05D001552 ORTHO05D003294 5.1e-07 57.4 62 53.2
COL.COLO4_12118 Corchorus olitorius HOM05D002593 ORTHO05D003294 6.7e-07 57.0 41 68.3
VMungo0720G2262 Vigna mungo HOM05D001552 ORTHO05D003294 6.7e-07 57.0 41 70.7
CBR_g36859 Chara braunii HOM05D001552 ORTHO05D003294 1.1e-06 56.2 63 46.0
TWI34G0022 Tripterygium wilfordii HOM05D001552 ORTHO05D003294 1.5e-06 55.8 61 54.1
Ah.04g157390 Amaranthus hybridus HOM05D001552 ORTHO05D003294 2.5e-06 55.1 41 68.3
COL.COLO4_12119 Corchorus olitorius HOM05D001552 ORTHO05D003294 2.5e-06 55.1 56 51.8
Thhalv10021382m.g Eutrema salsugineum HOM05D001552 ORTHO05D013172 3.3e-06 54.7 46 60.9
FAN07G2063 Fragaria x ananassa HOM05D001552 ORTHO05D003294 4.3e-06 54.3 57 52.6
FAN22G1270 Fragaria x ananassa HOM05D001552 ORTHO05D013172 4.3e-06 54.3 57 52.6
Gorai.012G174700 Gossypium raimondii HOM05D001552 ORTHO05D003294 4.3e-06 54.3 41 68.3
MCO01G059 Micromonas commoda HOM05D001552 ORTHO05D003294 4.3e-06 54.3 66 43.9
AUR62028129 Chenopodium quinoa HOM05D001552 ORTHO05D003294 5.6e-06 53.9 41 65.9
FAN12G1085 Fragaria x ananassa HOM05D001552 ORTHO05D003294 5.6e-06 53.9 50 54.0
FAN17G0107 Fragaria x ananassa HOM05D001552 ORTHO05D003294 5.6e-06 53.9 57 52.6


User provided reference genes

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