Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 4.2e-161 571.2 278 100.0
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 4.2e-161 571.2 278 100.0
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 7.5e-150 533.9 278 93.2
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 2.4e-148 528.9 278 90.6
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 5.4e-148 527.7 278 90.3
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 4.5e-147 524.6 278 89.6
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 1.0e-146 523.5 278 89.2
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 1.0e-146 523.5 278 88.8
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 1.0e-146 523.5 278 90.6
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 1.3e-146 523.1 278 88.1
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 2.3e-146 522.3 278 91.0
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 2.9e-146 521.9 278 89.6
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 2.9e-146 521.9 278 89.6
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 6.6e-146 520.8 278 88.8
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 6.6e-146 520.8 278 89.2
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 8.6e-146 520.4 277 88.8
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 1.1e-145 520.0 278 88.8
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 2.5e-145 518.8 278 88.5
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 4.2e-145 518.1 278 88.1
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 9.5e-145 516.9 278 88.8
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 3.6e-144 515.0 278 87.1
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 4.7e-144 514.6 278 88.8
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 6.1e-144 514.2 278 89.2
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 1.4e-143 513.1 278 88.5
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.4e-143 513.1 278 88.1
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 3.0e-143 511.9 278 86.7
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 4.0e-143 511.5 278 87.8
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 8.9e-143 510.4 278 88.1
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 1.2e-142 510.0 278 87.1
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 1.5e-142 509.6 278 87.1
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 2.0e-142 509.2 278 88.5
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 2.0e-142 509.2 278 87.8
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 3.4e-142 508.4 278 88.1
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 4.4e-142 508.1 278 85.3
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 5.7e-142 507.7 278 86.3
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 9.8e-142 506.9 278 87.4
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 2.2e-141 505.8 278 84.5
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 2.2e-141 505.8 278 87.8
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 3.7e-141 505.0 278 86.7
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 4.9e-141 504.6 278 86.0
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 6.3e-141 504.2 278 87.1
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 6.3e-141 504.2 278 86.7
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 6.3e-141 504.2 278 85.6
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 8.3e-141 503.8 278 86.0
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.4e-140 503.1 278 86.0
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 1.4e-140 503.1 278 85.6
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 1.8e-140 502.7 274 86.1
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 1.8e-140 502.7 278 86.0
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 4.1e-140 501.5 278 85.6
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 5.4e-140 501.1 278 85.6
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 5.4e-140 501.1 278 84.9
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 7.0e-140 500.7 278 86.0
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 7.0e-140 500.7 278 86.3
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 9.2e-140 500.4 278 84.9
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.6e-139 499.6 278 84.9
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 2.7e-139 498.8 278 85.6
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 2.7e-139 498.8 278 83.8
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.5e-139 498.0 278 86.0
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 4.5e-139 498.0 278 84.5
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 1.0e-138 496.9 278 83.1
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.0e-138 496.9 278 85.3
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.0e-138 496.9 278 85.3
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 1.3e-138 496.5 278 85.3
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.3e-138 496.5 278 85.6
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 1.3e-138 496.5 278 86.3
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 1.7e-138 496.1 278 83.8
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 2.3e-138 495.7 328 75.3
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 2.3e-138 495.7 278 84.5
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 2.3e-138 495.7 278 83.5
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 2.3e-138 495.7 270 87.4
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 3.8e-138 495.0 278 84.5
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 6.6e-138 494.2 278 83.8
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 1.1e-137 493.4 278 82.7
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 1.1e-137 493.4 278 83.1
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 1.1e-137 493.4 278 84.2
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 1.5e-137 493.0 278 83.5
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 3.3e-137 491.9 278 82.4
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 3.3e-137 491.9 278 82.4
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 3.3e-137 491.9 278 82.7
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 4.3e-137 491.5 278 82.4
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 4.3e-137 491.5 278 83.1
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 5.6e-137 491.1 278 82.7
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 5.6e-137 491.1 278 82.0
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 5.6e-137 491.1 269 85.9
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 5.6e-137 491.1 278 82.7
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 9.5e-137 490.3 278 82.4
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 1.2e-136 490.0 278 82.0
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 1.2e-136 490.0 278 82.4
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.6e-136 489.6 269 85.9
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 1.6e-136 489.6 278 84.2
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 2.1e-136 489.2 278 82.4
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 3.6e-136 488.4 278 82.0
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 3.6e-136 488.4 269 85.5
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 6.1e-136 487.6 278 82.4
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 6.1e-136 487.6 278 81.7
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 8.0e-136 487.3 278 83.8
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 8.0e-136 487.3 278 81.7
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 1.4e-135 486.5 278 82.0
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 1.4e-135 486.5 343 71.7
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 1.8e-135 486.1 278 82.7
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 1.2e-134 483.4 279 82.8
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 3.4e-134 481.9 278 80.6
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 4.4e-134 481.5 279 82.4
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 4.4e-134 481.5 279 82.4
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.3e-133 479.9 278 80.9
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 1.3e-133 479.9 270 84.4
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 2.9e-133 478.8 278 79.5
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 8.3e-133 477.2 279 81.7
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 2.4e-132 475.7 269 83.3
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 2.4e-132 475.7 278 80.6
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.7e-131 472.2 269 81.4
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 3.5e-131 471.9 334 71.0
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 3.5e-131 471.9 278 80.6
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 2.3e-130 469.2 278 79.5
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 8.6e-130 467.2 254 89.8
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 8.6e-130 467.2 278 78.8
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 5.6e-129 464.5 278 78.8
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 4.0e-127 458.4 271 79.7
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.9e-121 439.5 278 74.1
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 7.5e-118 427.6 268 78.0
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.1e-116 423.7 268 73.5
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 4.1e-116 421.8 278 70.9
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 5.1e-114 414.8 236 83.5
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 2.5e-113 412.5 278 67.6
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 2.0e-110 402.9 278 66.9
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 2.2e-109 399.4 278 71.6
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 1.6e-107 393.3 279 69.5
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 1.4e-100 370.2 193 90.2
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.5e-91 339.0 174 93.1
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 1.5e-89 333.6 237 65.8
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 4.0e-87 325.5 281 56.6
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 7.1e-84 314.7 179 86.6
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 9.3e-84 314.3 179 86.0
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 2.1e-83 313.2 167 90.4
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 6.7e-82 308.1 178 84.3
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 1.1e-81 307.4 188 75.5
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 1.3e-64 250.8 194 65.5
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 7.2e-60 235.0 291 44.0
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 8.2e-56 221.5 127 81.9
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 2.1e-51 206.8 169 59.8
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 4.5e-46 189.1 97 87.6
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 2.1e-43 180.3 302 38.7
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.6e-35 154.1 355 30.7
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 1.4e-34 151.0 79 87.3
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 5.2e-34 149.1 102 71.6
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 2.0e-33 147.1 73 89.0
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 1.3e-32 144.4 267 34.8
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 4.1e-31 139.4 358 29.6
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 1.0e-29 134.8 288 31.2
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.5e-28 131.0 137 51.8
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 5.5e-28 129.0 274 31.4
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 7.2e-28 128.6 246 37.0
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 9.5e-28 128.3 67 88.1
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.0e-26 124.8 332 30.1
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.2e-11 74.7 54 70.4
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 4.7e-11 72.8 35 94.3
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.4e-08 62.4 29 96.6


User provided reference genes

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