Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.7e-97 358.2 181 100.0
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.5e-93 345.5 181 97.8
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.4e-87 325.1 167 97.6
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 9.4e-85 317.0 165 97.0
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 3.5e-71 271.9 183 77.0
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 2.1e-68 262.7 171 76.6
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 2.7e-68 262.3 174 77.0
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 1.0e-67 260.4 179 74.3
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 2.3e-67 259.2 174 74.1
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 3.0e-67 258.8 178 73.6
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 5.2e-67 258.1 176 72.7
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 8.8e-67 257.3 175 74.3
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 8.8e-67 257.3 168 73.8
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 1.5e-66 256.5 170 77.6
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 1.3e-65 253.4 182 72.5
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.7e-65 253.1 170 74.7
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 2.2e-65 252.7 204 67.6
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 3.7e-65 251.9 168 74.4
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 4.8e-65 251.5 175 74.3
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.4e-64 250.0 180 73.3
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.8e-64 249.6 178 71.9
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 4.1e-64 248.4 168 72.6
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 5.3e-64 248.1 170 73.5
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 9.1e-64 247.3 175 73.1
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 9.1e-64 247.3 169 74.0
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 9.1e-64 247.3 175 73.1
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.2e-63 246.9 178 71.3
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.2e-63 246.9 174 70.7
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 2.0e-63 246.1 171 73.1
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 2.6e-63 245.7 170 72.9
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 2.6e-63 245.7 172 69.2
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 3.5e-63 245.4 175 72.6
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 5.9e-63 244.6 175 72.6
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 7.7e-63 244.2 175 70.9
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 1.7e-62 243.0 174 70.1
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.7e-62 243.0 168 70.8
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 2.9e-62 242.3 171 70.2
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 3.8e-62 241.9 176 68.8
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 5.0e-62 241.5 180 70.6
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 6.5e-62 241.1 171 70.8
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.1e-61 240.4 170 72.9
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.1e-61 240.4 175 69.1
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 1.5e-61 240.0 182 68.7
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.5e-61 239.2 180 67.2
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 2.5e-61 239.2 170 70.6
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 4.2e-61 238.4 166 71.7
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 9.4e-61 237.3 178 67.4
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 1.2e-60 236.9 170 69.4
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 6.1e-60 234.6 174 68.4
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 2.3e-59 232.6 174 66.7
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 2.3e-59 232.6 170 68.2
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 2.3e-59 232.6 171 64.3
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 4.0e-59 231.9 170 62.9
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 5.2e-59 231.5 157 74.5
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 5.2e-59 231.5 171 63.7
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 2.0e-58 229.6 210 61.0
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 2.6e-58 229.2 166 67.5
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 4.4e-58 228.4 162 73.5
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 7.5e-58 227.6 175 65.1
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 1.7e-57 226.5 174 66.7
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 6.3e-57 224.6 164 67.1
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.1e-56 223.8 170 68.8
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 1.4e-56 223.4 170 65.3
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 2.0e-55 219.5 234 53.4
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 4.5e-55 218.4 171 66.1
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 7.7e-55 217.6 192 60.9
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.5e-53 212.6 172 62.8
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.2e-52 210.3 172 61.6
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 1.6e-52 209.9 187 59.9
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.7e-52 209.1 172 62.2
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.0e-51 207.2 172 61.0
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 3.0e-51 205.7 167 65.9
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 4.0e-51 205.3 131 77.9
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 1.7e-49 199.9 185 61.1
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.2e-49 199.5 174 56.9
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 2.8e-49 199.1 174 61.5
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 8.3e-49 197.6 169 60.9
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 8.3e-49 197.6 138 72.5
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.8e-48 196.4 170 57.6
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 1.8e-48 196.4 171 57.9
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 3.1e-48 195.7 170 57.6
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 3.1e-48 195.7 126 77.0
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.3e-46 190.3 168 54.8
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.3e-46 190.3 172 55.2
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 5.0e-46 188.3 141 71.6
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 6.6e-46 188.0 147 65.3
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.5e-45 186.0 168 54.2
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 3.3e-45 185.7 168 54.2
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 3.3e-45 185.7 172 53.5
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 2.1e-44 183.0 158 58.9
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 1.0e-43 180.6 127 68.5
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 5.2e-43 178.3 117 76.1
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 6.8e-43 177.9 191 53.9
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 8.9e-43 177.6 168 52.4
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.7e-41 173.3 168 51.8
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 1.1e-40 170.6 175 50.9
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.4e-40 170.2 141 63.1
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 3.1e-40 169.1 171 50.9
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.1e-40 169.1 167 50.9
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 2.7e-39 166.0 105 76.2
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 7.8e-39 164.5 172 50.6
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 1.0e-38 164.1 167 50.9
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 1.7e-38 163.3 172 50.6
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 2.3e-38 162.9 124 67.7
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 1.5e-37 160.2 169 48.5
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 1.5e-37 160.2 169 48.5
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.9e-37 159.8 165 52.1
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 2.5e-37 159.5 121 72.7
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 9.5e-37 157.5 169 47.3
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 2.1e-36 156.4 165 50.9
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.0e-35 154.1 125 66.4
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.3e-35 152.9 124 63.7
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 4.0e-35 152.1 131 62.6
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.5e-34 150.2 131 58.0
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 3.7e-33 145.6 153 54.2
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 4.9e-33 145.2 187 41.7
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.4e-32 142.9 137 52.6
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 9.2e-32 141.0 172 42.4
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 1.0e-30 137.5 169 43.8
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 3.0e-30 136.0 173 43.4
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 5.0e-30 135.2 173 43.4
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 5.0e-30 135.2 173 43.4
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 5.0e-30 135.2 168 42.9
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 1.1e-29 134.0 125 59.2
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.5e-29 133.7 186 40.9
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 3.3e-29 132.5 118 61.9
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 5.6e-29 131.7 167 41.9
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.2e-28 130.6 117 54.7
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 3.1e-27 125.9 169 40.8
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.0e-26 123.2 172 40.7
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.7e-25 120.2 83 78.3
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 8.3e-25 117.9 139 47.5
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 1.6e-23 113.6 166 38.0
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 3.0e-22 109.4 132 50.8
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 7.3e-21 104.8 127 44.1
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 1.2e-18 97.4 162 35.8
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 2.2e-17 93.2 63 69.8
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 2.4e-16 89.7 57 75.4
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 9.2e-16 87.8 172 32.6
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 1.6e-15 87.0 79 53.2
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.6e-15 87.0 49 79.6
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 1.6e-15 87.0 49 77.6
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 3.5e-15 85.9 89 52.8
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 1.7e-14 83.6 57 70.2
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.5e-13 79.7 55 69.1
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 3.1e-11 72.8 94 44.7
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 6.8e-11 71.6 41 75.6
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 8.9e-11 71.2 78 52.6
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 7.8e-07 58.2 41 58.5
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 1.7e-06 57.0 62 41.9


User provided reference genes

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