Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 9.9e-172 606.7 304 100.0
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 3.9e-91 339.0 275 67.3
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 7.5e-87 324.7 249 69.5
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 2.9e-86 322.8 216 73.1
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 5.1e-83 312.0 225 72.0
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 2.4e-77 293.1 213 68.1
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 4.1e-77 292.4 213 68.1
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 5.4e-77 292.0 213 68.1
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 8.6e-75 284.6 210 70.0
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 1.4e-72 277.3 218 67.4
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 3.1e-72 276.2 243 61.3
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 1.2e-71 274.2 229 62.4
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 4.4e-71 272.3 199 69.3
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 3.8e-70 269.2 222 64.9
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 8.4e-70 268.1 217 63.6
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 3.2e-69 266.2 215 64.2
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 3.2e-69 266.2 247 58.3
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 9.3e-69 264.6 234 59.8
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 1.6e-68 263.8 212 67.5
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 2.1e-68 263.5 211 63.5
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 2.1e-68 263.5 211 63.5
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 3.5e-68 262.7 214 62.6
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 4.6e-68 262.3 226 60.6
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 7.8e-68 261.5 231 61.0
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 2.3e-67 260.0 234 59.8
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 2.3e-67 260.0 231 61.0
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 3.0e-67 259.6 221 62.4
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 3.0e-67 259.6 211 64.9
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 6.6e-67 258.5 214 62.6
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 8.7e-67 258.1 229 62.0
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 1.1e-66 257.7 219 60.7
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 1.9e-66 256.9 213 61.0
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 2.5e-66 256.5 226 60.6
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 3.3e-66 256.1 211 64.0
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 4.3e-66 255.8 210 64.3
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 5.6e-66 255.4 214 58.9
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 5.6e-66 255.4 216 62.5
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 7.3e-66 255.0 270 50.4
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 9.6e-66 254.6 201 66.7
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 9.6e-66 254.6 212 64.6
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 9.6e-66 254.6 238 60.1
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 1.3e-65 254.2 212 60.8
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 2.1e-65 253.4 238 58.0
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 2.1e-65 253.4 211 64.5
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 1.4e-64 250.8 207 61.4
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 4.0e-64 249.2 220 60.9
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.2e-63 247.7 207 61.8
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.2e-63 247.7 211 62.6
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 1.2e-63 247.7 249 55.4
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 1.3e-62 244.2 199 64.3
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 1.7e-62 243.8 241 54.4
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 1.7e-62 243.8 217 59.9
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 2.2e-62 243.4 215 59.5
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 2.9e-62 243.0 263 54.0
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 7.1e-61 238.4 212 57.5
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 1.6e-60 237.3 218 54.6
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 2.7e-60 236.5 213 56.8
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 4.6e-60 235.7 217 55.8
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 6.0e-60 235.3 214 58.4
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 1.7e-59 233.8 210 61.4
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 1.1e-58 231.1 455 35.6
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 1.3e-57 227.6 225 55.6
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 3.6e-57 226.1 238 52.5
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 3.6e-57 226.1 333 43.2
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 8.1e-57 224.9 207 56.0
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 1.1e-56 224.6 207 57.0
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 1.8e-56 223.8 217 53.0
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 3.1e-56 223.0 207 57.0
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 1.2e-55 221.1 217 51.2
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 2.6e-55 219.9 222 50.0
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 3.4e-55 219.5 218 52.3
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 3.4e-55 219.5 217 50.7
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 3.4e-55 219.5 217 50.7
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 7.6e-55 218.4 217 50.7
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 9.9e-55 218.0 216 50.9
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 9.9e-55 218.0 197 56.3
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 4.9e-54 215.7 223 51.1
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 1.1e-53 214.5 217 51.6
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 1.9e-53 213.8 220 55.0
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 1.9e-53 213.8 213 51.2
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 3.2e-53 213.0 185 55.1
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 1.8e-51 207.2 238 48.7
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 1.5e-50 204.1 217 48.4
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 3.3e-50 203.0 221 48.4
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 1.3e-49 201.1 163 60.1
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 1.1e-48 198.0 212 50.5
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 1.3e-46 191.0 171 60.8
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 3.0e-43 179.9 214 46.7
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 5.1e-43 179.1 202 50.0
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 5.1e-43 179.1 234 41.0
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 4.3e-42 176.0 222 43.2
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 1.2e-39 167.9 212 41.0
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 5.8e-39 165.6 216 45.8
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 1.7e-38 164.1 208 49.5
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 3.2e-37 159.8 214 41.6
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 4.6e-36 156.0 168 47.6
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 3.0e-35 153.3 152 57.9
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 1.3e-33 147.9 131 60.3
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 6.3e-33 145.6 129 60.5
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 1.5e-31 141.0 175 47.4
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 2.7e-28 130.2 159 44.7
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 3.0e-27 126.7 98 61.2
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 6.7e-27 125.6 97 61.9
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 3.0e-19 100.1 205 30.7
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 6.1e-12 75.9 52 61.5
Hund22393 Selenicereus undatus HOM05D007345 ORTHO05D009277 7.5e-10 68.9 50 64.0
ECA238G4657 Erigeron canadensis HOM05D006295 ORTHO05D008061 8.2e-09 65.5 102 40.2
VMungo0464G1486 Vigna mungo HOM05D001916 ORTHO05D003272 1.6e-07 61.2 110 36.4
Phvul.004G104600 Phaseolus vulgaris HOM05D001916 ORTHO05D003272 2.0e-07 60.8 121 35.5
AL1G23580 Arabidopsis lyrata HOM05D002462 ORTHO05D002893 5.9e-07 59.3 97 35.1
Manes.06G153900 Manihot esculenta HOM05D001916 ORTHO05D003272 7.7e-07 58.9 98 34.7
Nitab4.5_0000085g0050 Nicotiana tabacum HOM05D006451 ORTHO05D007680 1.0e-06 58.5 119 35.3
AL1G23570 Arabidopsis lyrata HOM05D002462 ORTHO05D002893 1.3e-06 58.2 79 40.5
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 1.3e-06 58.2 130 32.3
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 1.3e-06 58.2 130 32.3
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.3e-06 58.2 130 32.3
CBR_g18988 Chara braunii HOM05D006451 ORTHO05D007680 1.7e-06 57.8 102 33.3
HPP92_009818 Vanilla planifolia HOM05D001916 ORTHO05D003272 1.7e-06 57.8 120 34.2
A08p37070 Brassica napus HOM05D006451 ORTHO05D007680 2.9e-06 57.0 130 32.3
BraA08t35607Z Brassica rapa HOM05D006451 ORTHO05D007680 2.9e-06 57.0 117 33.3
Sed0026394 Sechium edule HOM05D006451 ORTHO05D007680 3.8e-06 56.6 119 36.1
Pp3c22_12710 Physcomitrium patens HOM05D001916 ORTHO05D003272 5.0e-06 56.2 99 34.3
Potri.008G156500 Populus trichocarpa HOM05D006451 ORTHO05D007680 5.0e-06 56.2 110 36.4
QL06p001354 Quercus lobata HOM05D006451 ORTHO05D007680 5.0e-06 56.2 109 33.9
Sabra08G0119100 Salix brachista HOM05D006451 ORTHO05D007680 5.0e-06 56.2 110 36.4
CsaV3_2G013500 Cucumis sativus L. HOM05D006451 ORTHO05D007680 6.5e-06 55.8 110 34.5
PGR004G2173 Punica granatum HOM05D006451 ORTHO05D007680 6.5e-06 55.8 113 32.7
TAR362G1293 Trochodendron aralioides HOM05D006451 ORTHO05D007680 6.5e-06 55.8 109 33.0
CiPaw.07G068600 Carya illinoinensis HOM05D001789 ORTHO05D001755 8.5e-06 55.5 97 37.1
Glyma.10G230000 Glycine max HOM05D001916 ORTHO05D003272 8.5e-06 55.5 97 33.0
THA.LOC104826059 Tarenaya hassleriana HOM05D006451 ORTHO05D007680 8.5e-06 55.5 119 33.6


User provided reference genes

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