Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049229 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.9e-121 439.1 213 100.0
CSS0019957 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 3.5e-99 365.2 253 75.5
CSS0002423 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 3.0e-98 362.1 253 75.1
CSS0037116 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.9e-97 359.4 253 74.7
CSS0005155 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.3e-96 356.7 243 77.0
Dinv07263 Davidia involucrata HOM05D005859 ORTHO05D007576 2.1e-91 339.3 253 70.8
Actinidia22411 Actinidia chinensis HOM05D005859 ORTHO05D007576 1.6e-88 329.7 253 68.4
Rhsim05G0088100 Rhododendron simsii HOM05D005859 ORTHO05D007576 2.1e-88 329.3 253 68.0
Haze_21816 Corylus avellana HOM05D005859 ORTHO05D007576 3.7e-88 328.6 253 66.8
Cfa013324 Carpinus fangiana HOM05D005859 ORTHO05D007576 8.1e-88 327.4 251 66.9
QL12p026076 Quercus lobata HOM05D005859 ORTHO05D007576 1.8e-87 326.2 249 68.3
CiPaw.07G208600 Carya illinoinensis HOM05D005859 ORTHO05D007576 2.4e-87 325.9 248 68.1
ClCG08G012440 Citrullus lanatus HOM05D005859 ORTHO05D007576 3.1e-87 325.5 248 68.1
Ciclev10009277m.g Citrus clementina HOM05D005859 ORTHO05D007576 4.0e-87 325.1 249 68.3
CSS0022235 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 9.0e-87 323.9 253 68.0
MELO3C011163.2 Cucumis melo HOM05D005859 ORTHO05D007576 9.0e-87 323.9 248 68.1
Rhsim02G0125100 Rhododendron simsii HOM05D005859 ORTHO05D007576 2.0e-86 322.8 251 67.7
CsaV3_2G031130 Cucumis sativus L. HOM05D005859 ORTHO05D007576 2.6e-86 322.4 248 67.7
Duzib151G0554 Durio zibethinus HOM05D005859 ORTHO05D007576 4.5e-86 321.6 248 66.9
CANSAT64G2965 Cannabis sativa HOM05D005859 ORTHO05D007576 1.3e-85 320.1 253 65.6
COL.COLO4_34684 Corchorus olitorius HOM05D005859 ORTHO05D007576 1.3e-85 320.1 248 66.1
Ca_15630_v3 Cicer arietinum L. HOM05D005859 ORTHO05D007576 2.2e-85 319.3 251 67.3
Glyma.04G078700 Glycine max HOM05D005859 ORTHO05D007576 2.2e-85 319.3 251 67.3
Cpa.g.sc10.203 Carica papaya HOM05D005859 ORTHO05D007576 4.9e-85 318.2 249 65.9
VMungo1309G0784 Vigna mungo HOM05D005859 ORTHO05D007576 6.5e-85 317.8 251 66.9
Atru.chr7.2673 Acer truncatum HOM05D005859 ORTHO05D007576 1.1e-84 317.0 249 66.3
Lj1g0020437 Lotus japonicus HOM05D005859 ORTHO05D007576 1.1e-84 317.0 251 66.1
Prupe.1G454800 Prunus persica HOM05D005859 ORTHO05D007576 1.1e-84 317.0 253 66.4
Gohir.D09G062800 Gossypium hirsutum HOM05D005859 ORTHO05D007576 1.4e-84 316.6 248 66.1
Gorai.006G077600 Gossypium raimondii HOM05D005859 ORTHO05D007576 1.4e-84 316.6 248 66.1
Thecc.04G293600 Theobroma cacao HOM05D005859 ORTHO05D007576 1.4e-84 316.6 249 66.7
Gohir.A09G063900 Gossypium hirsutum HOM05D005859 ORTHO05D007576 1.9e-84 316.2 251 64.9
Sabra06G0214800 Salix brachista HOM05D005859 ORTHO05D007576 4.2e-84 315.1 253 64.8
AUR62018819 Chenopodium quinoa HOM05D005859 ORTHO05D007576 5.5e-84 314.7 219 70.8
Sed0013908 Sechium edule HOM05D005859 ORTHO05D007576 7.1e-84 314.3 248 66.1
Potri.006G277100 Populus trichocarpa HOM05D005859 ORTHO05D007576 9.3e-84 313.9 253 64.8
Glyma.06G080300 Glycine max HOM05D005859 ORTHO05D007576 1.2e-83 313.5 251 66.5
Phvul.009G104500 Phaseolus vulgaris HOM05D005859 ORTHO05D007576 1.2e-83 313.5 251 66.5
Psat5g022960 Pisum sativum HOM05D005859 ORTHO05D007576 1.2e-83 313.5 248 65.3
Manes.08G049200 Manihot esculenta HOM05D005859 ORTHO05D007576 3.5e-83 312.0 251 65.3
Sed0022456 Sechium edule HOM05D005859 ORTHO05D007576 3.5e-83 312.0 248 65.7
Sc10g0009100 Simmondsia chinensis HOM05D005859 ORTHO05D007576 4.6e-83 311.6 251 64.5
TWI63G1176 Tripterygium wilfordii HOM05D005859 ORTHO05D007576 6.0e-83 311.2 251 64.1
Duzib151G0446 Durio zibethinus HOM05D005859 ORTHO05D007576 1.0e-82 310.5 248 65.3
RcHm_v2.0_Chr6g0305541 Rosa chinensis HOM05D005859 ORTHO05D007576 2.3e-82 309.3 253 64.4
ECA238G0328 Erigeron canadensis HOM05D005859 ORTHO05D007576 1.1e-81 307.0 250 64.4
MD08G1121000 Malus domestica HOM05D005859 ORTHO05D007576 1.5e-81 306.6 253 64.0
Potri.018G003900 Populus trichocarpa HOM05D005859 ORTHO05D007576 1.5e-81 306.6 253 63.6
FvH4_2g36340 Fragaria vesca HOM05D005859 ORTHO05D007576 3.3e-81 305.4 253 64.0
FAN15G0047 Fragaria x ananassa HOM05D005859 ORTHO05D007576 3.3e-81 305.4 253 64.0
FAN20G1422 Fragaria x ananassa HOM05D005859 ORTHO05D007576 5.7e-81 304.7 253 63.6
TPR.G1368 Trifolium pratense HOM05D005859 ORTHO05D007576 7.4e-81 304.3 251 63.7
DCAR_010833 Daucus carota HOM05D005859 ORTHO05D007576 9.6e-81 303.9 248 65.3
Medtr3g109360 Medicago truncatula HOM05D005859 ORTHO05D007576 9.6e-81 303.9 251 63.3
Lsat_1_v5_gn_5_41801 Lactuca sativa HOM05D005859 ORTHO05D007576 1.3e-80 303.5 248 64.1
Oeu056039.1 Olea europaea HOM05D005859 ORTHO05D007576 2.8e-80 302.4 251 62.9
Lalb_Chr11g0064301 Lupinus albus HOM05D005859 ORTHO05D007576 6.2e-80 301.2 249 63.9
Ah.07g199340 Amaranthus hybridus HOM05D005859 ORTHO05D007576 3.1e-79 298.9 253 61.7
AUR62007184 Chenopodium quinoa HOM05D005859 ORTHO05D007576 3.1e-79 298.9 251 61.4
Sabra18G0009500 Salix brachista HOM05D005859 ORTHO05D007576 3.1e-79 298.9 253 62.8
Eucgr.A02021 Eucalyptus grandis HOM05D005859 ORTHO05D007576 5.3e-79 298.1 253 60.5
Sabra18G0001700 Salix brachista HOM05D005859 ORTHO05D007576 6.9e-79 297.7 253 62.5
THA.LOC104814931 Tarenaya hassleriana HOM05D005859 ORTHO05D007576 1.5e-78 296.6 248 62.9
TAR625G0738 Trochodendron aralioides HOM05D005859 ORTHO05D007576 3.4e-78 295.4 261 60.9
EL10Ac5g12246 Beta vulgaris HOM05D005859 ORTHO05D007576 5.0e-77 291.6 250 61.2
PGR042G0112 Punica granatum HOM05D005859 ORTHO05D007576 5.0e-77 291.6 251 59.4
MD15G1100000 Malus domestica HOM05D005859 ORTHO05D007576 6.5e-77 291.2 224 67.4
Nn2g12765 Nelumbo nucifera HOM05D005859 ORTHO05D007576 1.4e-76 290.0 259 60.2
MSTRG.12122 Avicennia marina HOM05D005859 ORTHO05D007576 5.5e-76 288.1 250 62.0
CSS0043283 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 5.5e-76 288.1 215 70.7
Migut.A01131 Erythranthe guttata HOM05D005859 ORTHO05D007576 2.7e-75 285.8 253 62.1
CARHR188610 Cardamine hirsuta HOM05D005859 ORTHO05D007576 8.7e-74 280.8 248 60.1
Thhalv10004821m.g Eutrema salsugineum HOM05D005859 ORTHO05D007576 8.7e-74 280.8 248 59.3
A06p35610 Brassica napus HOM05D005859 ORTHO05D007576 1.1e-73 280.4 249 59.4
BolC7t44822H Brassica oleracea HOM05D005859 ORTHO05D008158 1.5e-73 280.0 249 59.4
Aa31LG11G4050 Aethionema arabicum HOM05D005859 ORTHO05D007576 1.9e-73 279.6 247 61.9
C07p42930 Brassica napus HOM05D005859 ORTHO05D008158 1.9e-73 279.6 249 59.4
Nitab4.5_0003379g0070 Nicotiana tabacum HOM05D005859 ORTHO05D007576 3.3e-73 278.9 249 59.8
AL6G36490 Arabidopsis lyrata HOM05D005859 ORTHO05D007576 4.3e-73 278.5 249 59.8
Nitab4.5_0006282g0050 Nicotiana tabacum HOM05D005859 ORTHO05D007576 4.3e-73 278.5 249 60.2
SalBow1G3786 Salvia bowleyana HOM05D005859 ORTHO05D007576 4.3e-73 278.5 253 60.1
CAN.G149.19 Capsicum annuum HOM05D005859 ORTHO05D007576 1.6e-72 276.6 241 60.6
AT5G24840 Arabidopsis thaliana HOM05D005859 ORTHO05D007576 2.2e-72 276.2 239 61.5
CSS0012487 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.2e-72 276.2 213 68.5
Cc09_g05860 Coffea canephora HOM05D005859 ORTHO05D007576 2.2e-72 276.2 245 59.6
Carub.0006s2269 Capsella rubella HOM05D005859 ORTHO05D007576 3.7e-72 275.4 239 61.1
SGA_v2.0_scaffold104G30176 Striga asiatica HOM05D005859 ORTHO05D007576 6.3e-72 274.6 244 59.8
Sp2g22610 Schrenkiella parvula HOM05D005859 ORTHO05D007576 1.8e-71 273.1 248 57.7
PGSC0003DMG400010428 Solanum tuberosum HOM05D005859 ORTHO05D007576 1.8e-71 273.1 244 59.4
Solyc02g068650.2 Solanum lycopersicum HOM05D005859 ORTHO05D007576 3.1e-71 272.3 239 60.7
MBI07_g41262_MAGBIO Magnolia biondii HOM05D005859 ORTHO05D007576 5.3e-71 271.6 250 57.2
PSO063G7086 Papaver somniferum HOM05D005859 ORTHO05D007576 1.2e-70 270.4 263 55.1
Sopen02g017820 Solanum pennellii HOM05D005859 ORTHO05D007576 1.5e-70 270.0 238 60.1
BcaB04g19801 Brassica carinata HOM05D005859 ORTHO05D007576 4.5e-70 268.5 248 58.1
Aqoxy7G02813 Aquilegia oxysepala HOM05D005859 ORTHO05D007576 7.7e-70 267.7 248 59.3
CSS0033509 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.0e-69 267.3 201 68.7
BcaC04g23549 Brassica carinata HOM05D005859 ORTHO05D007576 2.5e-68 262.7 249 56.2
HPP92_010546 Vanilla planifolia HOM05D005859 ORTHO05D007576 1.6e-67 260.0 242 56.6
unitig_21.g20313 Utricularia gibba HOM05D005859 ORTHO05D007576 4.6e-67 258.5 235 57.0
Peaxi162Scf00149g00014 Petunia axillaris HOM05D005859 ORTHO05D007576 5.1e-66 255.0 247 55.9
HPP92_010527 Vanilla planifolia HOM05D005859 ORTHO05D007576 6.7e-66 254.6 239 56.1
Zm00001eb208790 Zea mays HOM05D005859 ORTHO05D007576 4.3e-65 251.9 241 55.6
ATR0697G154 Amborella trichopoda HOM05D005859 ORTHO05D007576 1.5e-62 243.4 239 54.4
SEGI_16955 Sequoiadendron giganteum HOM05D005859 ORTHO05D007576 1.8e-58 229.9 271 46.9
SMO358G0125 Selaginella moellendorffii HOM05D005859 ORTHO05D007576 8.2e-56 221.1 238 49.2
Mapoly0026s0057 Marchantia polymorpha HOM05D005859 ORTHO05D007576 1.4e-55 220.3 267 45.7
Pp3c24_9600 Physcomitrium patens HOM05D005859 ORTHO05D007576 2.4e-55 219.5 235 48.9
HanXRQChr14g0440281 Helianthus annuus HOM05D005859 ORTHO05D007576 1.6e-54 216.9 191 59.2
AagrBONN_evm.TU.Sc2ySwM_344.1368 Anthoceros agrestis HOM05D005859 ORTHO05D007576 4.2e-52 208.8 253 45.1
CBR_g63067 Chara braunii HOM05D005859 ORTHO05D007576 1.2e-51 207.2 266 44.0
CSS0016583 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 7.5e-49 198.0 117 82.1
GSVIVG01035552001 Vitis vinifera HOM05D005859 ORTHO05D007576 3.5e-46 189.1 243 49.0
CDE05G2856 Ceratophyllum demersum HOM05D005859 ORTHO05D007576 1.2e-43 180.6 193 52.3
Cre07.g314550 Chlamydomonas reinhardtii HOM05D005859 ORTHO05D007576 1.6e-43 180.3 255 39.6
HPP92_010585 Vanilla planifolia HOM05D005859 ORTHO05D007576 2.7e-43 179.5 186 53.2
MCO01G481 Micromonas commoda HOM05D005859 ORTHO05D007576 4.8e-40 168.7 238 39.9
HanXRQChr07g0193381 Helianthus annuus HOM05D005859 ORTHO05D007576 1.1e-39 167.5 161 57.1
Lj2P347T15 Lonicera japonica HOM05D005859 ORTHO05D007576 1.4e-39 167.2 159 59.1
PRCOL_00003713 Prasinoderma coloniale HOM05D005859 ORTHO05D007576 1.4e-39 167.2 234 41.9
CSS0020153 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 9.1e-39 164.5 91 86.8
HanXRQChr09g0275211 Helianthus annuus HOM05D005859 ORTHO05D007576 4.5e-38 162.2 159 54.1
BolC9t53628H Brassica oleracea HOM05D005859 ORTHO05D007576 5.7e-33 145.2 91 74.7
HPP92_010538 Vanilla planifolia HOM05D005859 ORTHO05D007576 4.9e-32 142.1 91 73.6
HPP92_010638 Vanilla planifolia HOM05D005859 ORTHO05D007576 1.6e-30 137.1 90 72.2
Dinv07265 Davidia involucrata HOM05D005859 ORTHO05D007576 5.0e-29 132.1 136 58.1
Os06g0236900 Oryza sativa ssp. japonica HOM05D005859 ORTHO05D007576 4.3e-28 129.0 81 74.1
Haze_26141 Corylus avellana HOM05D005859 ORTHO05D007576 5.6e-28 128.6 233 32.2
HPP92_010304 Vanilla planifolia HOM05D005859 ORTHO05D007576 8.3e-24 114.8 195 37.9
BraA06t26486Z Brassica rapa HOM05D000880 ORTHO05D008158 6.0e-14 82.0 50 80.0
C09p07080 Brassica napus HOM05D000880 ORTHO05D008158 1.3e-13 80.9 51 78.4
BolC9t53624H Brassica oleracea HOM05D000880 ORTHO05D008158 8.6e-13 78.2 51 76.5
ATR1096G015 Amborella trichopoda HOM05D005859 ORTHO05D007576 1.5e-12 77.4 54 61.1
HPP92_010586 Vanilla planifolia HOM05D005859 ORTHO05D007576 2.8e-11 73.2 49 69.4
A09p06400 Brassica napus HOM05D005859 ORTHO05D007576 6.2e-11 72.0 48 68.8
A09p06390 Brassica napus HOM05D000880 ORTHO05D008158 8.9e-10 68.2 42 81.0


User provided reference genes

Program Settings