Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049222 Camellia sinensis var. sinensis HOM05D005378 ORTHO05D006986 3.6e-133 478.4 267 100.0
Dinv37717 Davidia involucrata HOM05D005378 ORTHO05D006986 2.5e-86 322.8 245 71.8
Hma1.2p1_2135F.1_g314860 Hydrangea macrophylla HOM05D005378 ORTHO05D006986 8.4e-82 307.8 245 68.6
TAR629G1125 Trochodendron aralioides HOM05D005378 ORTHO05D006986 1.3e-79 300.4 243 67.5
Haze_09001 Corylus avellana HOM05D005378 ORTHO05D006986 1.9e-78 296.6 237 68.8
Cfa012056 Carpinus fangiana HOM05D005378 ORTHO05D006986 2.1e-77 293.1 237 67.9
Gorai.004G205500 Gossypium raimondii HOM05D005378 ORTHO05D006986 8.1e-77 291.2 200 76.5
Gohir.D08G194800 Gossypium hirsutum HOM05D005378 ORTHO05D006986 1.1e-76 290.8 200 76.0
Ciclev10021134m.g Citrus clementina HOM05D005378 ORTHO05D006986 1.4e-76 290.4 200 74.5
DCAR_006775 Daucus carota HOM05D005378 ORTHO05D006986 3.1e-76 289.3 202 74.8
Duzib205G1930 Durio zibethinus HOM05D005378 ORTHO05D006986 3.1e-76 289.3 249 65.9
Gohir.A08G176000 Gossypium hirsutum HOM05D005378 ORTHO05D006986 4.0e-76 288.9 200 75.5
Manes.02G028800 Manihot esculenta HOM05D005378 ORTHO05D006986 4.0e-76 288.9 243 63.8
Prupe.5G084900 Prunus persica HOM05D005378 ORTHO05D006986 1.2e-75 287.3 236 69.1
Glyma.05G055000 Glycine max HOM05D005378 ORTHO05D006986 1.5e-75 287.0 200 75.0
Thecc.03G266200 Theobroma cacao HOM05D005378 ORTHO05D006986 1.5e-75 287.0 245 71.0
CiPaw.11G143700 Carya illinoinensis HOM05D005378 ORTHO05D006986 2.6e-75 286.2 243 69.5
VMungo0251G1120 Vigna mungo HOM05D005378 ORTHO05D006986 3.4e-75 285.8 183 77.0
Eucgr.E00505 Eucalyptus grandis HOM05D005378 ORTHO05D006986 4.4e-75 285.4 167 83.2
Potri.003G118400 Populus trichocarpa HOM05D005378 ORTHO05D006986 5.8e-75 285.0 189 75.7
QL12p016275 Quercus lobata HOM05D005378 ORTHO05D006986 5.8e-75 285.0 237 66.2
Lj2A203G52 Lonicera japonica HOM05D005378 ORTHO05D006986 1.7e-74 283.5 269 61.0
Potri.001G113800 Populus trichocarpa HOM05D005378 ORTHO05D006986 2.2e-74 283.1 266 61.3
PGSC0003DMG400003914 Solanum tuberosum HOM05D005378 ORTHO05D006986 3.8e-74 282.3 235 64.3
Phvul.003G217000 Phaseolus vulgaris HOM05D005378 ORTHO05D006986 1.1e-73 280.8 243 64.6
CsaV3_3G003410 Cucumis sativus L. HOM05D005378 ORTHO05D006986 1.9e-73 280.0 234 65.4
Nn6g34347 Nelumbo nucifera HOM05D005378 ORTHO05D006986 3.2e-73 279.3 189 74.1
Sabra03G0082400 Salix brachista HOM05D005378 ORTHO05D006986 4.2e-73 278.9 191 74.9
arahy.Tifrunner.gnm1.ann1.1K1ZSN Arachis hypogaea HOM05D005378 ORTHO05D006986 5.4e-73 278.5 186 75.8
PGR042G0099 Punica granatum HOM05D005378 ORTHO05D006986 5.4e-73 278.5 195 73.8
Cpa.g.sc29.47 Carica papaya HOM05D005378 ORTHO05D006986 7.1e-73 278.1 196 72.4
Rhsim10G0118700 Rhododendron simsii HOM05D005378 ORTHO05D006986 7.1e-73 278.1 194 75.8
TWI60G1116 Tripterygium wilfordii HOM05D005378 ORTHO05D006986 7.1e-73 278.1 236 63.1
arahy.Tifrunner.gnm1.ann1.2GQ0W5 Arachis hypogaea HOM05D005378 ORTHO05D006986 9.3e-73 277.7 186 75.8
Atru.chr9.1492 Acer truncatum HOM05D005378 ORTHO05D006986 1.2e-72 277.3 185 74.6
Psat4g069440 Pisum sativum HOM05D005378 ORTHO05D006986 1.6e-72 276.9 181 79.0
Nitab4.5_0005167g0010 Nicotiana tabacum HOM05D005378 ORTHO05D006986 2.7e-72 276.2 243 68.7
Sopen08g028190 Solanum pennellii HOM05D005378 ORTHO05D006986 3.5e-72 275.8 236 63.6
Nitab4.5_0012494g0030 Nicotiana tabacum HOM05D005378 ORTHO05D006986 4.6e-72 275.4 238 68.9
CAN.G630.23 Capsicum annuum HOM05D005378 ORTHO05D006986 6.0e-72 275.0 235 68.9
MD04G1072900 Malus domestica HOM05D005378 ORTHO05D006986 7.9e-72 274.6 241 65.1
TPR.G37594 Trifolium pratense HOM05D005378 ORTHO05D006986 7.9e-72 274.6 181 77.9
GSVIVG01019902001 Vitis vinifera HOM05D005378 ORTHO05D006986 1.7e-71 273.5 166 81.3
Lj4g0009345 Lotus japonicus HOM05D005378 ORTHO05D006986 2.3e-71 273.1 243 70.8
Medtr4g101820 Medicago truncatula HOM05D005378 ORTHO05D006986 3.0e-71 272.7 179 77.7
RcHm_v2.0_Chr7g0200231 Rosa chinensis HOM05D005378 ORTHO05D006986 3.0e-71 272.7 236 68.2
Sabra01G0087000 Salix brachista HOM05D005378 ORTHO05D006986 3.9e-71 272.3 243 62.1
Solyc08g079830.4 Solanum lycopersicum HOM05D005378 ORTHO05D006986 6.6e-71 271.6 234 63.7
Aqoxy7G00527 Aquilegia oxysepala HOM05D005378 ORTHO05D006986 8.7e-71 271.2 196 70.9
Lalb_Chr05g0225201 Lupinus albus HOM05D005378 ORTHO05D006986 1.9e-70 270.0 243 63.4
Oeu001912.1 Olea europaea HOM05D005378 ORTHO05D006986 2.5e-70 269.6 236 67.4
Cc08_g13620 Coffea canephora HOM05D005378 ORTHO05D006986 3.3e-70 269.2 248 60.5
Ca_12295_v3 Cicer arietinum L. HOM05D005378 ORTHO05D006986 4.3e-70 268.9 181 76.8
Hund14698 Selenicereus undatus HOM05D005378 ORTHO05D006986 4.3e-70 268.9 201 72.1
CANSAT21G0731 Cannabis sativa HOM05D005378 ORTHO05D006986 1.6e-69 266.9 236 64.0
FvH4_5g01090 Fragaria vesca HOM05D005378 ORTHO05D006986 1.6e-69 266.9 163 80.4
FAN18G4319 Fragaria x ananassa HOM05D005378 ORTHO05D006986 1.6e-69 266.9 163 80.4
MD00G1069800 Malus domestica HOM05D005378 ORTHO05D006986 2.1e-69 266.5 186 70.4
THA.LOC104818281 Tarenaya hassleriana HOM05D005378 ORTHO05D006986 2.1e-69 266.5 203 69.5
ClCG00G000130 Citrullus lanatus HOM05D005378 ORTHO05D006986 3.6e-69 265.8 183 73.8
ClCG10G003380 Citrullus lanatus HOM05D005378 ORTHO05D006986 3.6e-69 265.8 183 73.8
SalBow6G7208 Salvia bowleyana HOM05D005378 ORTHO05D006986 1.8e-68 263.5 254 65.4
MSTRG.25561 Avicennia marina HOM05D005378 ORTHO05D006986 2.4e-68 263.1 246 67.1
Sc01g0008970 Simmondsia chinensis HOM05D005378 ORTHO05D006986 3.1e-68 262.7 201 70.1
PGR031G2614 Punica granatum HOM05D005378 ORTHO05D006986 1.5e-67 260.4 196 68.4
ECA233G4179 Erigeron canadensis HOM05D005378 ORTHO05D006986 3.4e-67 259.2 197 67.0
FAN13G1015 Fragaria x ananassa HOM05D005378 ORTHO05D006986 4.5e-67 258.8 244 60.7
HanXRQChr02g0047721 Helianthus annuus HOM05D005378 ORTHO05D006986 4.5e-67 258.8 250 58.0
Sed0008997 Sechium edule HOM05D005378 ORTHO05D006986 4.5e-67 258.8 244 63.1
SGA_v2.0_scaffold37G14872 Striga asiatica HOM05D005378 ORTHO05D006986 2.9e-66 256.1 235 60.9
EL10Ac5g12674 Beta vulgaris HOM05D005378 ORTHO05D006986 3.8e-66 255.8 246 62.2
Migut.A00880 Erythranthe guttata HOM05D005378 ORTHO05D006986 2.4e-65 253.1 251 56.6
MSTRG.12037 Avicennia marina HOM05D005378 ORTHO05D006986 9.3e-65 251.1 148 82.4
AL1G23870 Arabidopsis lyrata HOM05D005378 ORTHO05D006986 1.6e-64 250.4 201 66.7
Carub.0001s1221 Capsella rubella HOM05D005378 ORTHO05D006986 2.7e-64 249.6 204 66.2
AUR62017340 Chenopodium quinoa HOM05D005378 ORTHO05D006986 1.0e-63 247.7 193 67.9
Aa31LG2G450 Aethionema arabicum HOM05D005378 ORTHO05D006986 1.3e-63 247.3 183 69.4
PSO782G2812 Papaver somniferum HOM05D005378 ORTHO05D006986 1.3e-63 247.3 197 67.5
BcaB03g13183 Brassica carinata HOM05D005378 ORTHO05D006986 1.8e-63 246.9 183 68.9
FAN08G1559 Fragaria x ananassa HOM05D005378 ORTHO05D006986 1.8e-63 246.9 282 55.7
Oeu001910.1 Olea europaea HOM05D005378 ORTHO05D006986 2.3e-63 246.5 164 73.8
Sp1g11100 Schrenkiella parvula HOM05D005378 ORTHO05D006986 6.7e-63 245.0 244 61.9
Zm00001eb073490 Zea mays HOM05D005378 ORTHO05D006986 1.1e-62 244.2 152 76.3
AT1G12520 Arabidopsis thaliana HOM05D005378 ORTHO05D006986 1.5e-62 243.8 200 66.0
C08p15470 Brassica napus HOM05D005378 ORTHO05D006986 1.5e-62 243.8 184 69.0
BolC8t49175H Brassica oleracea HOM05D005378 ORTHO05D006986 1.5e-62 243.8 184 69.0
A08p32790 Brassica napus HOM05D005378 ORTHO05D006986 2.5e-62 243.0 184 69.0
CARHR012800 Cardamine hirsuta HOM05D005378 ORTHO05D006986 5.6e-62 241.9 175 70.3
MELO3C014007.2 Cucumis melo HOM05D005378 ORTHO05D006986 5.6e-62 241.9 260 56.9
Thhalv10008232m.g Eutrema salsugineum HOM05D005378 ORTHO05D006986 5.6e-62 241.9 174 70.7
Peaxi162Scf00620g00241 Petunia axillaris HOM05D005378 ORTHO05D006986 5.6e-62 241.9 145 78.6
BraA08t35202Z Brassica rapa HOM05D005378 ORTHO05D006986 9.6e-62 241.1 184 68.5
PSO478G1428 Papaver somniferum HOM05D005378 ORTHO05D006986 2.8e-61 239.6 202 64.9
BcaC07g41696 Brassica carinata HOM05D005378 ORTHO05D006986 3.7e-61 239.2 182 66.5
Lsat_1_v5_gn_6_10640 Lactuca sativa HOM05D005378 ORTHO05D006986 1.1e-60 237.7 175 70.3
BolC8t52274H Brassica oleracea HOM05D005378 ORTHO05D006986 1.4e-60 237.3 245 55.9
C08p47320 Brassica napus HOM05D005378 ORTHO05D006986 3.1e-60 236.1 245 55.5
AUR62010552 Chenopodium quinoa HOM05D005378 ORTHO05D006986 3.1e-60 236.1 167 73.1
Ah.12g057930 Amaranthus hybridus HOM05D005378 ORTHO05D006986 5.3e-60 235.3 141 79.4
BcaB08g34272 Brassica carinata HOM05D005378 ORTHO05D006986 2.0e-59 233.4 201 62.7
BraA09t41728Z Brassica rapa HOM05D005378 ORTHO05D006986 2.0e-59 233.4 174 67.2
A09p63820 Brassica napus HOM05D005378 ORTHO05D006986 7.6e-59 231.5 237 57.8
ATR0757G076 Amborella trichopoda HOM05D005378 ORTHO05D006986 1.0e-58 231.1 139 79.1
Actinidia02066 Actinidia chinensis HOM05D005378 ORTHO05D006986 2.9e-58 229.6 156 76.9
COL.COLO4_23814 Corchorus olitorius HOM05D005378 ORTHO05D006986 1.0e-55 221.1 208 60.6
SEGI_32640 Sequoiadendron giganteum HOM05D005378 ORTHO05D006986 1.8e-55 220.3 148 70.9
HPP92_021079 Vanilla planifolia HOM05D005378 ORTHO05D006986 1.1e-54 217.6 177 62.1
CDE01G0558 Ceratophyllum demersum HOM05D005378 ORTHO05D006986 6.3e-53 211.8 149 69.1
Mapoly0127s0018 Marchantia polymorpha HOM05D005378 ORTHO05D006986 2.4e-52 209.9 155 65.2
AagrBONN_evm.TU.Sc2ySwM_228.1340 Anthoceros agrestis HOM05D005378 ORTHO05D006986 2.6e-51 206.5 153 64.7
Os04g0573200 Oryza sativa ssp. japonica HOM05D005378 ORTHO05D006986 1.2e-48 197.6 131 73.3
Pp3c18_10490 Physcomitrium patens HOM05D005378 ORTHO05D006986 6.1e-48 195.3 164 57.9
Pp3c21_8100 Physcomitrium patens HOM05D005378 ORTHO05D006986 3.9e-47 192.6 139 64.7
SMO201G0146 Selaginella moellendorffii HOM05D005378 ORTHO05D006986 4.3e-46 189.1 140 67.1
unitig_744.g24326 Utricularia gibba HOM05D005378 ORTHO05D006986 4.5e-43 179.1 120 71.7
Actinidia14494 Actinidia chinensis HOM05D005378 ORTHO05D006986 2.9e-42 176.4 97 87.6
Atru.chr3.15 Acer truncatum HOM05D000534 ORTHO05D000389 1.1e-41 174.5 112 78.6
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 2.5e-41 173.3 113 77.0
Atru.chr7.434 Acer truncatum HOM05D005378 ORTHO05D006986 3.2e-41 172.9 106 82.1
TAR374G0182 Trochodendron aralioides HOM05D005378 ORTHO05D006986 1.4e-31 141.0 144 52.8
CBR_g27778 Chara braunii HOM05D005378 ORTHO05D006986 5.3e-28 129.0 188 39.4
unitig_22.g5478 Utricularia gibba HOM05D002871 ORTHO05D003307 1.7e-26 124.0 108 61.1
BolC4t24476H Brassica oleracea HOM05D005378 ORTHO05D006986 1.5e-22 110.9 66 78.8
Atru.chr3.3516 Acer truncatum HOM05D005378 ORTHO05D006986 1.3e-21 107.8 62 82.3
BcaC06g31923 Brassica carinata HOM05D005378 ORTHO05D006986 8.2e-21 105.1 78 62.8
BcaC04g22737 Brassica carinata HOM05D005378 ORTHO05D006986 1.6e-19 100.9 63 69.8
C09p15780 Brassica napus HOM05D005378 ORTHO05D006986 1.6e-19 100.9 63 69.8
BolC9t54490H Brassica oleracea HOM05D005378 ORTHO05D006986 1.6e-19 100.9 63 69.8
Migut.D00824 Erythranthe guttata HOM05D005378 ORTHO05D006986 6.5e-18 95.5 75 62.7
A09p13280 Brassica napus HOM05D005378 ORTHO05D006986 4.2e-17 92.8 63 66.7
BraA09t36976Z Brassica rapa HOM05D005378 ORTHO05D006986 4.2e-17 92.8 63 66.7
AagrBONN_evm.TU.Sc2ySwM_228.914 Anthoceros agrestis HOM05D005378 ORTHO05D006986 1.2e-14 84.7 61 63.9
Oeu001911.1 Olea europaea HOM05D005378 ORTHO05D006986 3.1e-12 76.6 41 85.4
Pp3c17_14500 Physcomitrium patens HOM05D005378 ORTHO05D001264 1.3e-10 71.2 65 52.3
Atru.chr5.2888 Acer truncatum HOM05D005378 ORTHO05D037884 6.5e-10 68.9 44 77.3
Mapoly0152s0017 Marchantia polymorpha HOM05D005378 ORTHO05D006986 6.5e-10 68.9 102 37.3
Atru.chr6.1840 Acer truncatum HOM05D005378 ORTHO05D037884 1.4e-07 61.2 36 80.6
CBR_g48191 Chara braunii HOM05D005378 ORTHO05D000399 5.2e-07 59.3 66 34.8
CANSAT64G0315 Cannabis sativa HOM05D001405 ORTHO05D001264 2.0e-06 57.4 85 41.2
Lj3g0018098 Lotus japonicus HOM05D000262 ORTHO05D000300 2.6e-06 57.0 63 44.4
Sabra09G0002300 Salix brachista HOM05D001405 ORTHO05D001264 5.7e-06 55.8 103 35.9
HPP92_025381 Vanilla planifolia HOM05D001405 ORTHO05D001264 5.7e-06 55.8 111 34.2
EL10Ac9g22624 Beta vulgaris HOM05D001405 ORTHO05D001264 7.5e-06 55.5 97 37.1
Peaxi162Scf00983g00213 Petunia axillaris HOM05D001405 ORTHO05D001264 9.8e-06 55.1 101 37.6
PGR042G0027 Punica granatum HOM05D000262 ORTHO05D000300 9.8e-06 55.1 63 39.7
Sc21g0000320 Simmondsia chinensis HOM05D001405 ORTHO05D001264 9.8e-06 55.1 97 37.1


User provided reference genes

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