Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 5.2e-33 143.7 66 100.0
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 3.5e-13 77.8 59 66.1
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 3.5e-13 77.8 59 66.1
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 3.5e-13 77.8 59 66.1
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 3.5e-13 77.8 60 68.3
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 3.5e-13 77.8 59 66.1
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 4.5e-13 77.4 59 66.1
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 5.9e-13 77.0 57 66.7
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 5.9e-13 77.0 59 66.1
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 7.8e-13 76.6 59 66.1
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 7.8e-13 76.6 39 87.2
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 7.8e-13 76.6 39 87.2
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 7.8e-13 76.6 57 66.7
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 7.8e-13 76.6 59 66.1
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 7.8e-13 76.6 39 87.2
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 7.8e-13 76.6 39 87.2
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 7.8e-13 76.6 39 87.2
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 7.8e-13 76.6 39 87.2
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 7.8e-13 76.6 59 66.1
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 7.8e-13 76.6 59 66.1
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 7.8e-13 76.6 39 87.2
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 7.8e-13 76.6 59 66.1
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 7.8e-13 76.6 59 66.1
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 7.8e-13 76.6 39 87.2
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 1.3e-12 75.9 59 64.4
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.3e-12 75.9 39 84.6
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.3e-12 75.9 39 84.6
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.3e-12 75.9 59 64.4
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 1.3e-12 75.9 59 64.4
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 1.3e-12 75.9 59 64.4
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 1.3e-12 75.9 59 64.4
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 1.3e-12 75.9 59 64.4
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 1.3e-12 75.9 59 64.4
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 1.3e-12 75.9 59 64.4
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 1.3e-12 75.9 59 64.4
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 1.3e-12 75.9 59 64.4
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.3e-12 75.9 59 64.4
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.3e-12 75.9 59 64.4
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 1.7e-12 75.5 59 62.7
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 1.7e-12 75.5 59 64.4
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.7e-12 75.5 39 84.6
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 2.3e-12 75.1 59 64.4
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.3e-12 75.1 59 64.4
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.3e-12 75.1 59 64.4
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 2.3e-12 75.1 59 64.4
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 2.3e-12 75.1 59 64.4
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 2.3e-12 75.1 59 64.4
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.3e-12 75.1 59 61.0
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 2.9e-12 74.7 59 64.4
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 2.9e-12 74.7 59 62.7
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 2.9e-12 74.7 59 64.4
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 2.9e-12 74.7 59 64.4
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 2.9e-12 74.7 59 64.4
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 2.9e-12 74.7 59 64.4
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 2.9e-12 74.7 39 84.6
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 2.9e-12 74.7 59 64.4
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 2.9e-12 74.7 59 64.4
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 3.9e-12 74.3 39 84.6
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 3.9e-12 74.3 59 64.4
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 5.0e-12 73.9 39 82.1
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 5.0e-12 73.9 39 82.1
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 5.0e-12 73.9 59 64.4
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 5.0e-12 73.9 39 82.1
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 5.0e-12 73.9 39 82.1
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 5.0e-12 73.9 39 82.1
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 5.0e-12 73.9 39 82.1
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 5.0e-12 73.9 39 82.1
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 5.0e-12 73.9 59 64.4
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 5.0e-12 73.9 39 82.1
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 5.0e-12 73.9 38 86.8
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 5.0e-12 73.9 39 82.1
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 5.0e-12 73.9 39 84.6
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 5.0e-12 73.9 39 82.1
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 5.0e-12 73.9 39 82.1
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 5.0e-12 73.9 59 64.4
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 5.0e-12 73.9 59 64.4
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 6.6e-12 73.6 59 62.7
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 6.6e-12 73.6 59 62.7
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 6.6e-12 73.6 59 62.7
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 6.6e-12 73.6 59 62.7
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 6.6e-12 73.6 59 62.7
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 6.6e-12 73.6 59 62.7
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 6.6e-12 73.6 59 62.7
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 6.6e-12 73.6 39 84.6
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 6.6e-12 73.6 39 84.6
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 8.6e-12 73.2 39 79.5
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 8.6e-12 73.2 39 84.6
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 8.6e-12 73.2 59 62.7
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 1.1e-11 72.8 39 79.5
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 1.1e-11 72.8 39 79.5
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 1.1e-11 72.8 39 79.5
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 1.1e-11 72.8 39 79.5
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 1.1e-11 72.8 59 62.7
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 1.1e-11 72.8 39 84.6
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 1.5e-11 72.4 39 79.5
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 1.5e-11 72.4 59 61.0
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 2.5e-11 71.6 39 84.6
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.5e-11 71.6 39 79.5
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 4.3e-11 70.9 59 59.3
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 4.3e-11 70.9 59 59.3
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 4.3e-11 70.9 59 57.6
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 4.3e-11 70.9 59 62.7
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 5.6e-11 70.5 39 79.5
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 9.5e-11 69.7 59 59.3
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 2.1e-10 68.6 39 74.4
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 2.8e-10 68.2 39 74.4
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 3.6e-10 67.8 39 71.8
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 8.0e-10 66.6 69 55.1
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 8.0e-10 66.6 39 69.2
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 8.0e-10 66.6 39 74.4
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 1.0e-09 66.2 57 52.6
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 2.3e-09 65.1 32 93.8
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.3e-09 65.1 39 74.4
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 6.8e-09 63.5 75 50.7
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 1.5e-08 62.4 39 64.1
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 2.6e-08 61.6 61 57.4
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 4.4e-08 60.8 55 60.0
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 8.3e-07 56.6 50 62.0
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.9e-06 55.5 52 55.8


User provided reference genes

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