Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 0.0e+00 1588.9 815 100.0
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 0.0e+00 1179.1 827 74.0
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 0.0e+00 1177.2 825 73.9
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 0.0e+00 1158.3 868 71.3
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 0.0e+00 1129.8 820 73.3
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 0.0e+00 1116.7 807 73.0
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 9.8e-283 976.9 808 62.3
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 6.6e-279 964.1 830 61.1
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 2.1e-277 959.1 825 60.5
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 1.5e-270 936.4 818 58.6
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 1.4e-268 929.9 865 57.9
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 5.2e-268 927.9 772 62.2
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 1.9e-265 919.5 800 59.4
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.9e-257 892.9 794 57.9
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 1.3e-255 886.7 767 62.5
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 2.8e-253 879.0 775 58.8
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 2.4e-252 875.9 770 63.4
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 8.9e-252 874.0 771 59.5
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 6.4e-250 867.8 838 56.3
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 8.4e-250 867.5 794 58.8
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 1.2e-245 853.6 779 56.0
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 1.4e-244 850.1 806 57.4
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.8e-244 849.7 781 58.3
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 3.2e-241 839.0 802 56.5
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 7.1e-241 837.8 802 56.7
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 1.0e-239 833.9 809 57.1
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 5.1e-239 831.6 829 54.4
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 2.1e-237 826.2 785 57.6
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 4.8e-237 825.1 810 56.0
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 1.4e-236 823.5 862 52.3
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 4.5e-235 818.5 742 60.9
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 7.9e-232 807.7 919 51.0
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 2.5e-230 802.7 805 54.9
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 2.1e-229 799.7 817 55.1
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 1.8e-228 796.6 770 55.8
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 7.6e-227 791.2 615 66.5
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 4.2e-225 785.4 766 54.4
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 1.2e-224 783.9 825 51.6
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 1.0e-223 780.8 776 53.5
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 4.3e-222 775.4 789 52.9
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 2.1e-221 773.1 772 52.2
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 2.1e-221 773.1 857 50.5
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 1.1e-220 770.8 826 51.2
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 1.8e-220 770.0 830 55.1
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 1.8e-220 770.0 795 52.8
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 9.0e-220 767.7 775 53.0
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 9.0e-220 767.7 771 53.4
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 2.0e-219 766.5 775 53.2
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 3.4e-219 765.8 824 50.5
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 4.5e-219 765.4 794 52.4
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 7.6e-219 764.6 831 54.0
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 1.0e-218 764.2 827 50.7
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 1.3e-218 763.8 797 52.9
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 2.2e-218 763.1 793 52.8
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 2.9e-218 762.7 805 52.0
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 6.5e-218 761.5 785 52.4
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 6.5e-218 761.5 795 54.8
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 6.5e-218 761.5 826 50.6
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 1.4e-217 760.4 769 52.4
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 9.3e-217 757.7 782 54.1
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 9.3e-217 757.7 782 54.1
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 3.3e-214 749.2 766 53.0
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 3.1e-212 742.7 789 51.7
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.5e-211 740.3 769 52.7
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 1.3e-210 737.3 756 52.2
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 3.0e-207 726.1 780 50.4
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 5.7e-206 721.8 759 52.0
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 7.4e-206 721.5 792 50.9
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 1.3e-205 720.7 839 48.6
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 1.1e-204 717.6 746 51.9
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 5.7e-198 695.3 867 48.2
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 1.7e-197 693.7 844 47.3
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 2.8e-197 693.0 828 47.2
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 6.1e-192 675.2 720 51.0
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 8.0e-192 674.9 753 48.9
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 1.8e-191 673.7 818 49.1
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 1.7e-189 667.2 800 47.9
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 7.2e-185 651.7 849 44.9
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 8.3e-181 638.3 867 45.6
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 5.9e-179 632.1 642 54.5
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 5.0e-178 629.0 561 57.4
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 2.6e-174 616.7 763 46.5
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 6.3e-173 612.1 799 46.4
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 1.4e-172 610.9 595 55.0
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 4.1e-172 609.4 641 52.1
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 2.7e-171 606.7 777 43.0
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 3.5e-171 606.3 657 51.3
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 4.5e-171 605.9 867 43.4
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 4.2e-169 599.4 583 55.1
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 2.2e-165 587.0 890 39.6
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 1.5e-161 574.3 627 52.8
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 2.3e-159 567.0 599 51.6
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 7.8e-155 552.0 791 39.4
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 6.6e-146 522.3 558 51.3
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 1.6e-128 464.5 595 44.5
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 2.4e-124 450.7 541 46.6
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 9.0e-119 432.2 628 42.0
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 1.0e-109 402.1 358 58.1
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 1.6e-104 384.8 447 47.4
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 4.0e-74 283.9 261 57.1
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 1.1e-73 282.3 374 47.3
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 6.8e-66 256.5 535 35.7
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 1.1e-55 222.6 332 40.7
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 2.4e-55 221.5 674 29.5
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 1.7e-53 215.3 159 67.9
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 3.4e-49 201.1 168 63.1
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 1.8e-47 195.3 746 27.3
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 4.6e-46 190.7 170 57.1
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 7.8e-46 189.9 597 26.5
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 1.9e-44 185.3 146 67.1
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 1.9e-44 185.3 146 67.1
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 1.0e-42 179.5 436 30.0
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 1.0e-42 179.5 646 24.1
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 1.3e-40 172.6 185 50.3
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 1.4e-31 142.5 148 48.6
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 1.4e-31 142.5 148 48.6
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 3.9e-29 134.4 118 55.1
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 2.5e-28 131.7 117 55.6
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 7.8e-22 110.2 87 58.6
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 3.0e-21 108.2 87 59.8
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 3.2e-15 88.2 78 57.7
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 3.9e-13 81.3 68 63.2
CAN.G772.6 Capsicum annuum HOM05D005833 ORTHO05D008135 1.9e-12 79.0 82 53.7
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 5.6e-12 77.4 49 75.5
Potri.004G111300 Populus trichocarpa HOM05D000001 ORTHO05D000003 9.9e-09 66.6 372 20.2
SalBow4G1958 Salvia bowleyana HOM05D000001 ORTHO05D000003 2.9e-08 65.1 344 20.1
TAR627G1084 Trochodendron aralioides HOM05D000300 ORTHO05D000383 3.8e-08 64.7 411 20.0
Sabra04G0073200 Salix brachista HOM05D000001 ORTHO05D000003 1.9e-07 62.4 382 19.6
CSS0031260 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 1.2e-06 59.7 440 18.6
Aqoxy1G01503 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 2.1e-06 58.9 336 22.0
Aqoxy1G01507 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 2.1e-06 58.9 336 22.0
Pp3c12_2390 Physcomitrium patens HOM05D000855 ORTHO05D008530 4.6e-06 57.8 361 19.9
CSS0001629 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 6.0e-06 57.4 445 18.9
CSS0020701 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 6.0e-06 57.4 445 18.9
Lalb_Chr01g0006501 Lupinus albus HOM05D000300 ORTHO05D000383 7.9e-06 57.0 344 18.3


User provided reference genes

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