Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 5.1e-140 501.1 265 100.0
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 6.7e-116 421.0 289 81.3
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 3.1e-89 332.4 300 66.7
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 1.1e-86 323.9 274 69.0
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 1.5e-86 323.6 288 66.0
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 6.1e-85 318.2 280 67.1
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 8.0e-85 317.8 287 63.1
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 3.7e-82 308.9 286 62.9
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 4.9e-82 308.5 291 64.3
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 1.4e-81 307.0 287 64.1
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 2.4e-81 306.2 287 63.4
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 6.0e-80 301.6 279 61.6
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 6.6e-79 298.1 285 60.7
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 1.9e-78 296.6 284 60.2
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 4.3e-78 295.4 284 62.0
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 1.1e-76 290.8 273 62.3
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 5.2e-76 288.5 290 59.3
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 6.8e-76 288.1 272 62.1
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 8.9e-76 287.7 281 60.5
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.5e-75 287.0 288 58.7
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.6e-75 286.2 273 61.9
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 2.6e-75 286.2 273 61.9
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 5.8e-75 285.0 276 61.2
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 5.8e-75 285.0 284 61.3
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 7.5e-75 284.6 279 61.3
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.7e-74 283.5 276 61.2
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.7e-74 283.5 279 60.6
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 1.7e-74 283.5 286 59.1
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 2.9e-74 282.7 281 59.4
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 6.4e-74 281.6 295 59.3
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 1.1e-73 280.8 266 60.9
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 4.1e-73 278.9 293 59.7
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 7.0e-73 278.1 270 58.1
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 3.5e-72 275.8 276 58.7
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 3.5e-72 275.8 271 60.1
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 6.0e-72 275.0 292 57.9
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 7.8e-72 274.6 283 58.7
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 1.3e-71 273.9 270 57.4
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 5.1e-71 271.9 285 57.5
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 8.6e-71 271.2 287 57.8
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 8.6e-71 271.2 283 58.7
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 1.1e-70 270.8 272 59.6
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 1.5e-70 270.4 272 60.3
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 5.6e-70 268.5 295 53.6
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 7.3e-70 268.1 281 58.4
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 7.3e-70 268.1 269 58.7
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 7.3e-70 268.1 246 60.6
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 1.2e-69 267.3 290 54.8
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 1.2e-69 267.3 267 59.6
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 2.8e-69 266.2 293 55.3
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 3.6e-69 265.8 285 58.9
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 4.7e-69 265.4 282 58.5
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 1.8e-68 263.5 297 55.2
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 2.3e-68 263.1 288 54.5
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 4.0e-68 262.3 273 58.2
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 8.9e-68 261.2 277 57.0
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 3.4e-67 259.2 285 56.8
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 5.8e-67 258.5 287 55.4
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 7.5e-67 258.1 248 59.7
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.3e-66 257.3 257 58.4
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 2.9e-66 256.1 272 55.9
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 2.9e-66 256.1 273 55.7
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.7e-66 255.8 300 54.0
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.4e-66 255.0 290 54.1
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 8.3e-66 254.6 291 54.0
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 8.3e-66 254.6 253 60.1
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 8.3e-66 254.6 290 54.8
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.4e-65 253.8 291 53.6
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.9e-65 253.4 286 54.2
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.9e-65 253.4 262 55.3
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.9e-65 253.4 290 53.8
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.9e-65 253.4 250 60.4
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.4e-65 253.1 283 55.1
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.2e-65 252.7 290 53.8
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 3.2e-65 252.7 266 56.8
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 3.2e-65 252.7 266 56.8
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 3.2e-65 252.7 275 59.6
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 3.2e-65 252.7 280 55.4
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 4.1e-65 252.3 288 52.4
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.1e-65 252.3 291 54.0
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.4e-65 251.9 290 53.4
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 2.1e-64 250.0 277 55.6
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 3.5e-64 249.2 277 55.6
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.7e-63 246.9 247 57.9
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 3.0e-63 246.1 283 53.7
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 3.9e-63 245.7 270 54.8
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 6.6e-63 245.0 270 54.4
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.1e-62 244.2 269 54.6
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 1.1e-62 244.2 267 57.3
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 1.9e-62 243.4 281 53.4
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 2.5e-62 243.0 282 54.3
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 2.5e-62 243.0 276 53.6
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 4.3e-62 242.3 283 52.7
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 4.3e-62 242.3 283 52.7
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 4.3e-62 242.3 283 52.7
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 4.3e-62 242.3 265 58.9
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 5.6e-62 241.9 287 54.0
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 7.3e-62 241.5 291 52.9
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 1.6e-61 240.4 276 53.6
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 2.1e-61 240.0 286 53.8
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 2.8e-61 239.6 263 55.5
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 3.6e-61 239.2 247 59.1
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 4.7e-61 238.8 247 57.5
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 2.4e-60 236.5 286 52.8
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 4.0e-60 235.7 286 52.4
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 3.4e-59 232.6 285 51.6
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 3.4e-59 232.6 282 52.8
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 3.4e-59 232.6 270 55.2
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.4e-59 232.3 292 52.4
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 7.6e-59 231.5 296 52.7
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 1.3e-58 230.7 282 52.5
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 2.2e-58 229.9 254 56.3
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 6.4e-58 228.4 290 51.0
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 6.4e-58 228.4 256 55.9
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 6.4e-58 228.4 283 52.3
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 1.1e-57 227.6 294 50.7
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 3.2e-57 226.1 281 52.3
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 5.4e-57 225.3 292 50.3
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.6e-56 223.8 297 49.2
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 1.6e-56 223.8 276 51.8
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 1.0e-55 221.1 284 50.7
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 2.3e-55 219.9 223 57.0
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.1e-55 218.8 260 56.2
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 6.6e-55 218.4 276 52.9
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 8.7e-55 218.0 272 52.2
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 1.1e-52 211.1 228 55.3
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 1.5e-51 207.2 282 48.2
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 2.0e-51 206.8 294 48.3
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 2.0e-51 206.8 262 50.8
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 7.6e-51 204.9 191 58.6
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 9.3e-49 198.0 245 49.4
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 1.7e-42 177.2 284 41.9
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.9e-42 176.4 212 51.4
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 6.4e-42 175.3 167 60.5
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.1e-41 174.5 269 46.1
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 1.4e-41 174.1 292 45.2
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 2.4e-41 173.3 198 56.6
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 9.3e-41 171.4 263 44.5
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 1.8e-39 167.2 273 41.0
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 5.1e-39 165.6 288 40.3
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 1.9e-38 163.7 251 45.8
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 3.3e-38 162.9 240 45.8
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 5.6e-38 162.2 149 58.4
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.5e-35 152.5 201 48.8
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.5e-35 152.5 145 54.5
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 5.8e-35 152.1 245 42.4
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 1.0e-34 151.4 131 58.8
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 6.5e-34 148.7 272 40.4
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 1.4e-33 147.5 139 52.5
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 5.5e-33 145.6 144 56.2
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.5e-32 142.9 172 54.1
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 3.7e-29 132.9 181 48.1
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 4.8e-29 132.5 121 64.5
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 6.2e-29 132.1 158 55.1
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 6.2e-29 132.1 158 55.1
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 1.2e-27 127.9 249 39.4
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 1.7e-26 124.0 258 36.4
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.9e-26 123.2 121 61.2
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 5.0e-26 122.5 146 54.1
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 1.4e-25 120.9 154 46.8
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 5.5e-25 119.0 315 32.4
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 4.6e-24 115.9 241 33.6
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.2e-21 107.1 147 46.9
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 2.2e-21 107.1 183 42.6
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 4.8e-21 105.9 246 37.4
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 3.4e-19 99.8 169 43.2
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.9e-18 96.7 86 62.8
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 3.6e-16 89.7 211 35.5
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.3e-14 82.8 124 53.2
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 5.7e-14 82.4 72 59.7
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 5.7e-14 82.4 244 32.4
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.4e-12 77.0 67 55.2
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 3.1e-12 76.6 240 32.9
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.5e-11 74.3 72 63.9
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.6e-11 73.6 77 62.3
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 5.0e-10 69.3 76 57.9
DCAR_018080 Daucus carota HOM05D002169 ORTHO05D018172 4.7e-08 62.8 46 71.7
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 4.7e-08 62.8 69 52.2
DCAR_013591 Daucus carota HOM05D003921 ORTHO05D004394 8.8e-07 58.5 135 38.5
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 4.4e-06 56.2 99 48.5
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 9.7e-06 55.1 85 43.5


User provided reference genes

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