Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049055 Camellia sinensis var. sinensis HOM05D003114 ORTHO05D003519 8.8e-66 253.4 126 100.0
Migut.C00667 Erythranthe guttata HOM05D003114 ORTHO05D003519 1.2e-22 110.2 70 81.4
CAN.G1002.6 Capsicum annuum HOM05D003114 ORTHO05D003519 2.1e-22 109.4 71 78.9
Rhsim12G0123700 Rhododendron simsii HOM05D003114 ORTHO05D003519 2.7e-22 109.0 70 80.0
Migut.E01196 Erythranthe guttata HOM05D003114 ORTHO05D003519 3.5e-22 108.6 70 80.0
Dinv39367 Davidia involucrata HOM05D003114 ORTHO05D003519 4.6e-22 108.2 70 80.0
Lj5g0027441 Lotus japonicus HOM05D003114 ORTHO05D003519 4.6e-22 108.2 70 78.6
Manes.18G031300 Manihot esculenta HOM05D003114 ORTHO05D003519 4.6e-22 108.2 70 77.1
SGA_v2.0_scaffold24G10278 Striga asiatica HOM05D003114 ORTHO05D003519 4.6e-22 108.2 71 78.9
Hma1.2p1_0260F.1_g104360 Hydrangea macrophylla HOM05D003114 ORTHO05D003519 6.0e-22 107.8 70 80.0
Nitab4.5_0000790g0060 Nicotiana tabacum HOM05D003114 ORTHO05D003519 6.0e-22 107.8 70 78.6
QL02p007130 Quercus lobata HOM05D003114 ORTHO05D003519 6.0e-22 107.8 70 77.1
PGSC0003DMG402015451 Solanum tuberosum HOM05D003114 ORTHO05D003519 6.0e-22 107.8 70 78.6
TWI36G0061 Tripterygium wilfordii HOM05D003114 ORTHO05D003519 7.8e-22 107.5 70 75.7
MSTRG.22284 Avicennia marina HOM05D003114 ORTHO05D003519 1.0e-21 107.1 70 78.6
Cfa018458 Carpinus fangiana HOM05D003114 ORTHO05D003519 1.0e-21 107.1 70 77.1
DCAR_019495 Daucus carota HOM05D003114 ORTHO05D003519 1.0e-21 107.1 70 78.6
Nitab4.5_0002940g0050 Nicotiana tabacum HOM05D003114 ORTHO05D003519 1.3e-21 106.7 70 77.1
Nitab4.5_0008571g0020 Nicotiana tabacum HOM05D003114 ORTHO05D003519 1.3e-21 106.7 70 77.1
SalBow8G4186 Salvia bowleyana HOM05D003114 ORTHO05D003519 1.3e-21 106.7 70 78.6
THA.LOC104803395 Tarenaya hassleriana HOM05D003114 ORTHO05D003519 1.3e-21 106.7 70 77.1
vmacro04486 Vaccinium macrocarpon HOM05D003114 ORTHO05D003519 1.3e-21 106.7 67 82.1
Atru.chr13.574 Acer truncatum HOM05D003114 ORTHO05D003519 1.7e-21 106.3 70 77.1
Aqoxy5G01744 Aquilegia oxysepala HOM05D003114 ORTHO05D003519 1.7e-21 106.3 70 75.7
Ca_13324_v3 Cicer arietinum L. HOM05D003114 ORTHO05D003519 1.7e-21 106.3 70 77.1
Ciclev10000230m.g Citrus clementina HOM05D003114 ORTHO05D003519 1.7e-21 106.3 70 77.1
MELO3C003892.2 Cucumis melo HOM05D003114 ORTHO05D003519 1.7e-21 106.3 70 75.7
CsaV3_3G044820 Cucumis sativus L. HOM05D003114 ORTHO05D003519 1.7e-21 106.3 70 75.7
Duzib041G0357 Durio zibethinus HOM05D003114 ORTHO05D003519 1.7e-21 106.3 70 77.1
Duzib093G1140 Durio zibethinus HOM05D003114 ORTHO05D003519 1.7e-21 106.3 70 77.1
Glyma.09G114500 Glycine max HOM05D003114 ORTHO05D003519 1.7e-21 106.3 70 77.1
Glyma.17G246600 Glycine max HOM05D003114 ORTHO05D003519 1.7e-21 106.3 70 77.1
Psat6g010640 Pisum sativum HOM05D003114 ORTHO05D003519 1.7e-21 106.3 70 77.1
Sabra02G0103300 Salix brachista HOM05D003114 ORTHO05D003519 1.7e-21 106.3 70 75.7
Solyc12g088990.2 Solanum lycopersicum HOM05D003114 ORTHO05D003519 1.7e-21 106.3 70 77.1
Sopen12g030890 Solanum pennellii HOM05D003114 ORTHO05D003519 1.7e-21 106.3 70 77.1
Cc10_g03540 Coffea canephora HOM05D003114 ORTHO05D003519 2.3e-21 105.9 70 77.1
Gohir.A05G197600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 2.3e-21 105.9 67 80.6
Gohir.D05G200600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 2.3e-21 105.9 67 80.6
Gorai.009G205900 Gossypium raimondii HOM05D003114 ORTHO05D003519 2.3e-21 105.9 67 80.6
HanXRQChr02g0045841 Helianthus annuus HOM05D003114 ORTHO05D003519 2.3e-21 105.9 70 78.6
Lsat_1_v5_gn_1_19460 Lactuca sativa HOM05D003114 ORTHO05D003519 2.3e-21 105.9 70 78.6
TPR.G15746 Trifolium pratense HOM05D003114 ORTHO05D003519 2.3e-21 105.9 70 75.7
TAR625G0620 Trochodendron aralioides HOM05D003114 ORTHO05D003519 2.3e-21 105.9 70 77.1
HPP92_017781 Vanilla planifolia HOM05D003114 ORTHO05D003519 2.3e-21 105.9 70 74.3
DCAR_020951 Daucus carota HOM05D003114 ORTHO05D003519 3.0e-21 105.5 70 80.0
Migut.N02678 Erythranthe guttata HOM05D003114 ORTHO05D003519 3.0e-21 105.5 70 75.7
Lj4C47G8 Lonicera japonica HOM05D003114 ORTHO05D003519 3.0e-21 105.5 70 75.7
Nitab4.5_0000453g0100 Nicotiana tabacum HOM05D003114 ORTHO05D003519 3.0e-21 105.5 67 80.6
Potri.014G039100 Populus trichocarpa HOM05D003114 ORTHO05D003519 3.0e-21 105.5 70 75.7
arahy.Tifrunner.gnm1.ann1.E8QAF1 Arachis hypogaea HOM05D003114 ORTHO05D003519 3.9e-21 105.1 70 75.7
arahy.Tifrunner.gnm1.ann1.SVX42N Arachis hypogaea HOM05D003114 ORTHO05D003519 3.9e-21 105.1 70 75.7
Cpa.g.sc64.34 Carica papaya HOM05D003114 ORTHO05D003519 3.9e-21 105.1 70 75.7
ClCG05G019260 Citrullus lanatus HOM05D003114 ORTHO05D003519 3.9e-21 105.1 70 75.7
Phvul.001G017700 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 3.9e-21 105.1 70 77.1
Prupe.1G385700 Prunus persica HOM05D003114 ORTHO05D003519 3.9e-21 105.1 70 74.3
TWI12G1412 Tripterygium wilfordii HOM05D003114 ORTHO05D003519 3.9e-21 105.1 70 74.3
VMungo1309G2059 Vigna mungo HOM05D003114 ORTHO05D003519 3.9e-21 105.1 77 70.1
Haze_17604 Corylus avellana HOM05D001143 ORTHO05D001457 5.1e-21 104.8 67 79.1
ECA247G0467 Erigeron canadensis HOM05D003114 ORTHO05D003519 5.1e-21 104.8 70 77.1
Lalb_Chr24g0399101 Lupinus albus HOM05D003114 ORTHO05D003519 5.1e-21 104.8 67 79.1
Medtr1g021680 Medicago truncatula HOM05D003114 ORTHO05D003519 5.1e-21 104.8 70 75.7
PSO700G0395 Papaver somniferum HOM05D003114 ORTHO05D003519 5.1e-21 104.8 70 74.3
Potri.002G131400 Populus trichocarpa HOM05D003114 ORTHO05D003519 5.1e-21 104.8 70 75.7
Sed0016520 Sechium edule HOM05D003114 ORTHO05D003519 5.1e-21 104.8 70 75.7
AL1G53790 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 6.6e-21 104.4 70 74.3
MSTRG.1310 Avicennia marina HOM05D003114 ORTHO05D003519 6.6e-21 104.4 70 77.1
Carub.0001s3632 Capsella rubella HOM05D003114 ORTHO05D003519 6.6e-21 104.4 70 74.3
CARHR037120 Cardamine hirsuta HOM05D003114 ORTHO05D003519 6.6e-21 104.4 70 74.3
Eucgr.A00473 Eucalyptus grandis HOM05D003114 ORTHO05D003519 6.6e-21 104.4 70 75.7
Lj4C782G7 Lonicera japonica HOM05D003114 ORTHO05D003519 6.6e-21 104.4 67 77.6
Lj1g0027709 Lotus japonicus HOM05D003114 ORTHO05D003519 6.6e-21 104.4 77 68.8
MD00G1038900 Malus domestica HOM05D003114 ORTHO05D003519 6.6e-21 104.4 70 74.3
PSO170G0663 Papaver somniferum HOM05D003114 ORTHO05D003519 6.6e-21 104.4 70 72.9
Peaxi162Scf00064g00323 Petunia axillaris HOM05D003114 ORTHO05D003519 6.6e-21 104.4 70 77.1
Sc07g0007470 Simmondsia chinensis HOM05D003114 ORTHO05D003519 6.6e-21 104.4 70 74.3
Aa31sc119G20 Aethionema arabicum HOM05D003114 ORTHO05D003519 8.7e-21 104.0 70 74.3
AT1G47550 Arabidopsis thaliana HOM05D003114 ORTHO05D003519 8.7e-21 104.0 70 74.3
AT1G47560 Arabidopsis thaliana HOM05D003114 ORTHO05D003519 8.7e-21 104.0 70 74.3
SGA_v2.0_scaffold14G07047 Striga asiatica HOM05D003114 ORTHO05D003519 8.7e-21 104.0 70 74.3
Sed0021383 Sechium edule HOM05D003114 ORTHO05D003519 1.1e-20 103.6 70 72.9
Ca_15530_v3 Cicer arietinum L. HOM05D003114 ORTHO05D003519 1.5e-20 103.2 77 66.2
Thhalv10011225m.g Eutrema salsugineum HOM05D003114 ORTHO05D003519 1.5e-20 103.2 70 72.9
Phvul.007G175100 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 1.5e-20 103.2 77 68.8
PGR031G3129 Punica granatum HOM05D003114 ORTHO05D003519 1.5e-20 103.2 68 75.0
CAN.G389.2 Capsicum annuum HOM05D003114 ORTHO05D003519 1.9e-20 102.8 70 72.9
Gohir.D11G228600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.9e-20 102.8 70 74.3
Gorai.007G245700 Gossypium raimondii HOM05D003114 ORTHO05D003519 1.9e-20 102.8 70 74.3
Thecc.08G020200 Theobroma cacao HOM05D003114 ORTHO05D003519 1.9e-20 102.8 70 75.7
VMungo0647G1221 Vigna mungo HOM05D003114 ORTHO05D003519 1.9e-20 102.8 70 74.3
Ah.02g115940 Amaranthus hybridus HOM05D003114 ORTHO05D003519 2.5e-20 102.4 70 75.7
BcaB07g33828 Brassica carinata HOM05D003114 ORTHO05D003519 2.5e-20 102.4 70 72.9
BcaC08g42958 Brassica carinata HOM05D003114 ORTHO05D003519 2.5e-20 102.4 70 72.9
A10p06300 Brassica napus HOM05D003114 ORTHO05D003519 2.5e-20 102.4 70 72.9
C06p01990 Brassica napus HOM05D003114 ORTHO05D003519 2.5e-20 102.4 70 72.9
BraA10t42896Z Brassica rapa HOM05D003114 ORTHO05D003519 2.5e-20 102.4 70 72.9
CiPaw.16G052700 Carya illinoinensis HOM05D003114 ORTHO05D003519 2.5e-20 102.4 70 74.3
Sp1g34560 Schrenkiella parvula HOM05D003114 ORTHO05D003519 2.5e-20 102.4 70 72.9
ATR0733G144 Amborella trichopoda HOM05D003114 ORTHO05D003519 3.3e-20 102.1 67 76.1
CiPaw.15G069400 Carya illinoinensis HOM05D003114 ORTHO05D003519 3.3e-20 102.1 70 72.9
FvH4_2g40450 Fragaria vesca HOM05D003114 ORTHO05D003519 3.3e-20 102.1 70 72.9
RcHm_v2.0_Chr6g0300281 Rosa chinensis HOM05D003114 ORTHO05D003519 3.3e-20 102.1 70 72.9
GSVIVG01009623001 Vitis vinifera HOM05D003114 ORTHO05D003519 3.3e-20 102.1 70 72.9
Oeu015606.1 Olea europaea HOM05D003114 ORTHO05D003519 4.3e-20 101.7 70 75.7
Sopen07g012830 Solanum pennellii HOM05D003114 ORTHO05D003519 4.3e-20 101.7 70 72.9
MSTRG.24311 Avicennia marina HOM05D003114 ORTHO05D003519 5.6e-20 101.3 70 72.9
MBI16_g36197_MAGBIO Magnolia biondii HOM05D003114 ORTHO05D003519 5.6e-20 101.3 70 70.0
Medtr3g111590 Medicago truncatula HOM05D003114 ORTHO05D003519 5.6e-20 101.3 77 64.9
EL10Ac5g11704 Beta vulgaris HOM05D003114 ORTHO05D003519 7.3e-20 100.9 70 74.3
MD08G1038000 Malus domestica HOM05D003114 ORTHO05D003519 7.3e-20 100.9 70 74.3
Nn5g29441 Nelumbo nucifera HOM05D003114 ORTHO05D003519 7.3e-20 100.9 70 70.0
Glyma.04G034700 Glycine max HOM05D003114 ORTHO05D003519 9.6e-20 100.5 77 67.5
unitig_899.g15621 Utricularia gibba HOM05D003114 ORTHO05D003519 9.6e-20 100.5 71 74.6
CANSAT21G1752 Cannabis sativa HOM05D003114 ORTHO05D003519 1.3e-19 100.1 70 72.9
CANSAT25G1109 Cannabis sativa HOM05D003114 ORTHO05D003519 1.3e-19 100.1 70 72.9
AUR62038454 Chenopodium quinoa HOM05D003114 ORTHO05D003519 1.3e-19 100.1 67 77.6
AUR62042151 Chenopodium quinoa HOM05D003114 ORTHO05D003519 1.3e-19 100.1 67 77.6
Lalb_Chr08g0245771 Lupinus albus HOM05D003114 ORTHO05D003519 1.3e-19 100.1 74 71.6
TAR381G0473 Trochodendron aralioides HOM05D003114 ORTHO05D003519 1.3e-19 100.1 70 72.9
Gohir.A11G227433 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.6e-19 99.8 67 76.1
Oeu009593.2 Olea europaea HOM05D003114 ORTHO05D003519 2.8e-19 99.0 70 70.0
CDE07G1354 Ceratophyllum demersum HOM05D003114 ORTHO05D003519 3.6e-19 98.6 70 71.4
Os11g0276000 Oryza sativa ssp. japonica HOM05D003114 ORTHO05D003519 4.8e-19 98.2 73 63.0
FAN20G2585 Fragaria x ananassa HOM05D003114 ORTHO05D003519 6.2e-19 97.8 73 71.2
PSO541G3592 Papaver somniferum HOM05D003114 ORTHO05D003519 6.2e-19 97.8 69 71.0
PSO675G2900 Papaver somniferum HOM05D003114 ORTHO05D003519 6.2e-19 97.8 69 71.0
Phvul.009G055500 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 6.2e-19 97.8 77 64.9
Lalb_Chr14g0368971 Lupinus albus HOM05D003114 ORTHO05D003519 8.1e-19 97.4 70 71.4
Nn6g32173 Nelumbo nucifera HOM05D003114 ORTHO05D003519 1.1e-18 97.1 70 68.6
Zm00001eb051220 Zea mays HOM05D003114 ORTHO05D003519 1.1e-18 97.1 67 70.1
Os03g0625700 Oryza sativa ssp. japonica HOM05D003114 ORTHO05D003519 1.4e-18 96.7 67 70.1
Actinidia38026 Actinidia chinensis HOM05D003114 ORTHO05D003519 1.8e-18 96.3 71 73.2
ECA232G2779 Erigeron canadensis HOM05D003114 ORTHO05D003519 1.8e-18 96.3 71 69.0
Zm00001eb168790 Zea mays HOM05D003114 ORTHO05D003519 3.1e-18 95.5 73 60.3
Psat0s2724g0040 Pisum sativum HOM05D003114 ORTHO05D003519 4.0e-18 95.1 62 72.6
Lsat_1_v5_gn_4_122980 Lactuca sativa HOM05D003114 ORTHO05D003519 1.2e-17 93.6 71 64.8
Aqoxy6G00963 Aquilegia oxysepala HOM05D003114 ORTHO05D003519 3.4e-17 92.0 67 68.7
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 4.4e-17 91.7 70 65.7
arahy.Tifrunner.gnm1.ann1.06HR6X Arachis hypogaea HOM05D003114 ORTHO05D003519 4.4e-17 91.7 73 64.4
arahy.Tifrunner.gnm1.ann1.I3NIKD Arachis hypogaea HOM05D003114 ORTHO05D003519 4.4e-17 91.7 73 64.4
CDE04G0236 Ceratophyllum demersum HOM05D003114 ORTHO05D003519 4.4e-17 91.7 70 62.9
HanXRQChr09g0268391 Helianthus annuus HOM05D003114 ORTHO05D003519 5.8e-17 91.3 55 80.0
HPP92_006943 Vanilla planifolia HOM05D003114 ORTHO05D003519 5.8e-17 91.3 73 63.0
HanXRQChr16g0507961 Helianthus annuus HOM05D003114 ORTHO05D003519 1.3e-16 90.1 73 60.3
Peaxi162Scf01340g00219 Petunia axillaris HOM05D003114 ORTHO05D003519 1.3e-16 90.1 70 67.1
Lalb_Chr22g0355331 Lupinus albus HOM05D003114 ORTHO05D003519 2.2e-16 89.4 64 70.3
SMO117G0063 Selaginella moellendorffii HOM05D003114 ORTHO05D003519 4.9e-16 88.2 80 56.2
Gohir.A05G260500 Gossypium hirsutum HOM05D003114 ORTHO05D003519 6.4e-16 87.8 71 60.6
Pp3c11_22450 Physcomitrium patens HOM05D003114 ORTHO05D003519 2.3e-13 79.3 64 57.8
Mapoly0013s0072 Marchantia polymorpha HOM05D003114 ORTHO05D003519 3.0e-13 79.0 80 48.8
SEGI_02474 Sequoiadendron giganteum HOM05D003114 ORTHO05D003519 3.0e-13 79.0 68 61.8
Glyma.14G078700 Glycine max HOM05D003114 ORTHO05D003519 8.7e-13 77.4 48 81.2
AagrBONN_evm.TU.Sc2ySwM_228.1666 Anthoceros agrestis HOM05D003114 ORTHO05D003519 1.9e-12 76.3 75 52.0
AagrBONN_evm.TU.Sc2ySwM_228.1675 Anthoceros agrestis HOM05D003114 ORTHO05D003519 1.9e-12 76.3 75 52.0
FAN15G2607 Fragaria x ananassa HOM05D003114 ORTHO05D003519 4.0e-10 68.6 45 75.6
Cfa002225 Carpinus fangiana HOM05D003114 ORTHO05D003519 4.5e-09 65.1 55 65.5
FAN27G1632 Fragaria x ananassa HOM05D003114 ORTHO05D003519 5.8e-09 64.7 42 76.2
Pp3c1_15530 Physcomitrium patens HOM05D003114 ORTHO05D003519 2.4e-07 59.3 96 36.5
CBR_g48206 Chara braunii HOM05D003114 ORTHO05D003519 7.1e-07 57.8 83 42.2


User provided reference genes

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