Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048995 Camellia sinensis var. sinensis HOM05D000999 ORTHO05D000961 1.6e-93 346.3 196 100.0
Dinv37220 Davidia involucrata HOM05D000999 ORTHO05D000961 7.9e-29 131.3 195 53.3
Gohir.D04G118000 Gossypium hirsutum HOM05D000999 ORTHO05D000961 1.0e-28 131.0 226 41.6
Potri.006G213900 Populus trichocarpa HOM05D000999 ORTHO05D000961 3.0e-28 129.4 215 44.7
Gorai.009G423000 Gossypium raimondii HOM05D000999 ORTHO05D000961 5.1e-28 128.6 226 41.6
Hma1.2p1_0111F.1_g053230 Hydrangea macrophylla HOM05D000999 ORTHO05D000961 1.9e-27 126.7 212 43.9
Thecc.05G047000 Theobroma cacao HOM05D000999 ORTHO05D000961 1.9e-27 126.7 230 42.6
Gohir.A04G078800 Gossypium hirsutum HOM05D000999 ORTHO05D000961 7.4e-27 124.8 226 42.0
Duzib128G0279 Durio zibethinus HOM05D000999 ORTHO05D000961 4.8e-26 122.1 224 43.3
Dinv35660 Davidia involucrata HOM05D000999 ORTHO05D000961 6.2e-26 121.7 177 55.4
Actinidia19751 Actinidia chinensis HOM05D000999 ORTHO05D000961 1.1e-25 120.9 175 56.6
Haze_20716 Corylus avellana HOM05D000999 ORTHO05D000961 1.1e-25 120.9 213 45.1
Sabra06G0164800 Salix brachista HOM05D000999 ORTHO05D000961 1.8e-25 120.2 216 45.4
Potri.016G080400 Populus trichocarpa HOM05D000999 ORTHO05D000961 2.4e-25 119.8 215 42.8
Ciclev10012329m.g Citrus clementina HOM05D000999 ORTHO05D000961 1.5e-24 117.1 200 40.5
Duzib093G1882 Durio zibethinus HOM05D000999 ORTHO05D000961 1.9e-22 110.2 220 44.1
Manes.09G085600 Manihot esculenta HOM05D000999 ORTHO05D000961 9.3e-22 107.8 203 44.8
Glyma.13G133600 Glycine max HOM05D000999 ORTHO05D000961 1.2e-21 107.5 206 41.3
Sabra16G0088600 Salix brachista HOM05D000999 ORTHO05D000961 1.2e-21 107.5 213 38.0
CiPaw.09G187200 Carya illinoinensis HOM05D000999 ORTHO05D000961 2.1e-21 106.7 216 39.4
MD12G1133800 Malus domestica HOM05D000999 ORTHO05D000961 4.6e-21 105.5 193 39.9
MD04G1118300 Malus domestica HOM05D000999 ORTHO05D000961 1.0e-20 104.4 206 41.3
Manes.08G074600 Manihot esculenta HOM05D000999 ORTHO05D000961 1.0e-20 104.4 227 41.0
Cfa017449 Carpinus fangiana HOM05D000999 ORTHO05D000961 1.8e-20 103.6 219 44.3
Oeu029812.1 Olea europaea HOM05D000999 ORTHO05D000961 3.9e-20 102.4 195 40.5
GSVIVG01025598001 Vitis vinifera HOM05D000999 ORTHO05D000961 3.9e-20 102.4 187 49.2
Nitab4.5_0000725g0130 Nicotiana tabacum HOM05D000999 ORTHO05D000961 5.1e-20 102.1 181 42.5
Prupe.6G247400 Prunus persica HOM05D000999 ORTHO05D000961 5.1e-20 102.1 205 40.5
MSTRG.5696 Avicennia marina HOM05D000999 ORTHO05D000961 6.7e-20 101.7 212 40.1
Glyma.10G045700 Glycine max HOM05D000999 ORTHO05D000961 1.9e-19 100.1 206 38.8
Nitab4.5_0008047g0010 Nicotiana tabacum HOM05D000999 ORTHO05D000961 1.9e-19 100.1 189 44.4
Cpa.g.sc114.4 Carica papaya HOM05D000999 ORTHO05D000961 3.3e-19 99.4 186 39.2
Glyma.03G174100 Glycine max HOM05D000999 ORTHO05D000961 4.3e-19 99.0 217 45.2
Nitab4.5_0002818g0030 Nicotiana tabacum HOM05D000999 ORTHO05D000961 4.3e-19 99.0 182 41.2
CAN.G687.6 Capsicum annuum HOM05D000999 ORTHO05D000961 9.7e-19 97.8 191 37.2
Sopen10g035290 Solanum pennellii HOM05D000999 ORTHO05D000961 9.7e-19 97.8 193 39.4
Rhsim05G0186100 Rhododendron simsii HOM05D000999 ORTHO05D000961 1.3e-18 97.4 218 39.4
RcHm_v2.0_Chr3g0467751 Rosa chinensis HOM05D000999 ORTHO05D000961 1.3e-18 97.4 208 40.9
Solyc10g085910.2 Solanum lycopersicum HOM05D000999 ORTHO05D000961 1.3e-18 97.4 193 39.4
QL07p046572 Quercus lobata HOM05D000999 ORTHO05D000961 3.7e-18 95.9 211 40.3
CiPaw.10G141500 Carya illinoinensis HOM05D000999 ORTHO05D000961 4.8e-18 95.5 181 45.9
Peaxi162Scf00017g01716 Petunia axillaris HOM05D000999 ORTHO05D000961 8.2e-18 94.7 198 37.4
FvH4_6g14630 Fragaria vesca HOM05D000999 ORTHO05D000961 1.4e-17 94.0 209 42.6
FAN14G5219 Fragaria x ananassa HOM05D000999 ORTHO05D000961 1.4e-17 94.0 209 41.6
PGSC0003DMG400017602 Solanum tuberosum HOM05D000999 ORTHO05D000961 1.4e-17 94.0 193 37.8
VMungo0720G1192 Vigna mungo HOM05D000999 ORTHO05D000961 1.4e-17 94.0 204 39.7
FAN02G0868 Fragaria x ananassa HOM05D000999 ORTHO05D000961 4.1e-17 92.4 209 42.1
Glyma.19G175100 Glycine max HOM05D000999 ORTHO05D000961 4.1e-17 92.4 220 44.1
VMungo1383G0767 Vigna mungo HOM05D000999 ORTHO05D000961 6.9e-17 91.7 214 40.2
TWI77G0893 Tripterygium wilfordii HOM05D000999 ORTHO05D000961 1.2e-16 90.9 192 47.4
Medtr7g100450 Medicago truncatula HOM05D000999 ORTHO05D000961 2.6e-16 89.7 219 42.0
FAN05G5331 Fragaria x ananassa HOM05D000999 ORTHO05D000961 4.5e-16 89.0 209 43.1
CANSAT80G0190 Cannabis sativa HOM05D000999 ORTHO05D000961 5.9e-16 88.6 201 36.8
Phvul.L001741 Phaseolus vulgaris HOM05D000999 ORTHO05D000961 5.9e-16 88.6 207 37.7
Atru.chr8.2488 Acer truncatum HOM05D000999 ORTHO05D000961 7.7e-16 88.2 229 39.3
COL.COLO4_09161 Corchorus olitorius HOM05D000999 ORTHO05D000961 1.3e-15 87.4 218 41.7
Psat3g047320 Pisum sativum HOM05D000999 ORTHO05D000961 1.3e-15 87.4 160 43.1
FAN09G2510 Fragaria x ananassa HOM05D000999 ORTHO05D000961 2.2e-15 86.7 209 43.5
Nn2g12857 Nelumbo nucifera HOM05D000999 ORTHO05D000961 2.9e-15 86.3 170 38.8
TPR.G29932 Trifolium pratense HOM05D000999 ORTHO05D000961 3.8e-15 85.9 213 37.6
Gohir.A13G093490 Gossypium hirsutum HOM05D000999 ORTHO05D000961 5.0e-15 85.5 182 36.8
Cc06_g03140 Coffea canephora HOM05D000999 ORTHO05D000961 1.1e-14 84.3 270 30.4
Gorai.001G250300 Gossypium raimondii HOM05D000999 ORTHO05D000961 1.9e-14 83.6 181 37.6
Lj1g0004558 Lotus japonicus HOM05D000999 ORTHO05D000961 2.5e-14 83.2 225 39.1
TAR157G0001 Trochodendron aralioides HOM05D000999 ORTHO05D000961 2.5e-14 83.2 192 39.1
Phvul.001G171400 Phaseolus vulgaris HOM05D000999 ORTHO05D000961 9.4e-14 81.3 214 38.3
arahy.Tifrunner.gnm1.ann1.NBD2TE Arachis hypogaea HOM05D000999 ORTHO05D000961 1.6e-13 80.5 179 37.4
arahy.Tifrunner.gnm1.ann1.VWR9F9 Arachis hypogaea HOM05D000999 ORTHO05D000961 1.6e-13 80.5 177 46.3
Nn2g10519 Nelumbo nucifera HOM05D000999 ORTHO05D000961 1.6e-13 80.5 193 36.8
TWI53G1282 Tripterygium wilfordii HOM05D000999 ORTHO05D000961 2.1e-13 80.1 197 44.7
Psat6g068560 Pisum sativum HOM05D000999 ORTHO05D000961 7.9e-13 78.2 185 37.8
Lj5g0012379 Lotus japonicus HOM05D000999 ORTHO05D000961 1.4e-12 77.4 211 36.0
Migut.L01628 Erythranthe guttata HOM05D000999 ORTHO05D000961 1.8e-12 77.0 177 42.4
Medtr1g067560 Medicago truncatula HOM05D000999 ORTHO05D000961 2.3e-12 76.6 187 35.3
Migut.L01630 Erythranthe guttata HOM05D000999 ORTHO05D000961 3.9e-12 75.9 174 44.3
ClCG04G008530 Citrullus lanatus HOM05D000999 ORTHO05D000961 1.1e-11 74.3 143 39.2
Nitab4.5_0000643g0010 Nicotiana tabacum HOM05D000999 ORTHO05D000961 1.1e-11 74.3 191 38.7
PGR004G0431 Punica granatum HOM05D000999 ORTHO05D000961 1.1e-11 74.3 192 37.0
MSTRG.10277 Avicennia marina HOM05D000999 ORTHO05D000961 1.5e-11 73.9 141 37.6
vmacro20107 Vaccinium macrocarpon HOM05D000999 ORTHO05D000961 1.5e-11 73.9 171 35.7
CsaV3_4G024620 Cucumis sativus L. HOM05D000999 ORTHO05D000961 2.0e-11 73.6 221 33.0
TPR.G36970 Trifolium pratense HOM05D000999 ORTHO05D000961 2.5e-11 73.2 192 45.3
Eucgr.K03174 Eucalyptus grandis HOM05D000999 ORTHO05D000961 3.3e-11 72.8 207 36.2
SGA_v2.0_scaffold94G28632 Striga asiatica HOM05D000999 ORTHO05D000961 3.3e-11 72.8 207 34.8
MELO3C003095.2 Cucumis melo HOM05D000999 ORTHO05D000961 4.3e-11 72.4 196 36.2
Sed0005368 Sechium edule HOM05D000999 ORTHO05D000961 4.3e-11 72.4 225 32.4
Ca_09595_v3 Cicer arietinum L. HOM05D000999 ORTHO05D000961 7.4e-11 71.6 64 64.1
Lalb_Chr02g0153281 Lupinus albus HOM05D000999 ORTHO05D000961 1.7e-10 70.5 227 34.8
Peaxi162Scf00039g00614 Petunia axillaris HOM05D000999 ORTHO05D000961 2.8e-10 69.7 213 36.2
Sed0028169 Sechium edule HOM05D000999 ORTHO05D000961 3.7e-10 69.3 183 33.9
TAR369G0211 Trochodendron aralioides HOM05D000999 ORTHO05D000961 3.7e-10 69.3 182 36.8
SalBow4G0218 Salvia bowleyana HOM05D000999 ORTHO05D000961 1.4e-09 67.4 129 36.4
CsaV3_3G035170 Cucumis sativus L. HOM05D000999 ORTHO05D000961 3.1e-09 66.2 213 31.5
MELO3C009286.2 Cucumis melo HOM05D000999 ORTHO05D000961 4.1e-09 65.9 212 31.6
Lj2A102T68 Lonicera japonica HOM05D000999 ORTHO05D000961 4.1e-09 65.9 63 61.9
SalBow4G2001 Salvia bowleyana HOM05D000999 ORTHO05D000961 5.3e-09 65.5 129 35.7
Aqoxy4G03061 Aquilegia oxysepala HOM05D000999 ORTHO05D000961 9.1e-09 64.7 195 33.3
ClCG10G020850 Citrullus lanatus HOM05D000999 ORTHO05D000961 9.1e-09 64.7 212 31.1
Hund24046 Selenicereus undatus HOM05D000999 ORTHO05D000961 9.1e-09 64.7 218 38.5
Ca_08797_v3 Cicer arietinum L. HOM05D000999 ORTHO05D000961 1.5e-08 63.9 229 31.9
Duzib168G2065 Durio zibethinus HOM05D000999 ORTHO05D000961 1.5e-08 63.9 196 37.2
Migut.J00382 Erythranthe guttata HOM05D000999 ORTHO05D000961 2.0e-08 63.5 208 41.8
Hma1.2p1_0846F.1_g227760 Hydrangea macrophylla HOM05D000999 ORTHO05D000961 3.4e-08 62.8 214 32.7
Phvul.L001641 Phaseolus vulgaris HOM05D000999 ORTHO05D031577 3.4e-08 62.8 70 55.7
RhsimUnG0009000 Rhododendron simsii HOM05D000999 ORTHO05D000961 3.4e-08 62.8 184 38.0
Rhsim13G0087800 Rhododendron simsii HOM05D000999 ORTHO05D000961 5.9e-08 62.0 184 37.0
Ah.12g052280 Amaranthus hybridus HOM05D000999 ORTHO05D000961 7.7e-08 61.6 186 38.2
PGR102G0240 Punica granatum HOM05D000999 ORTHO05D000961 1.3e-07 60.8 182 34.1
QL01p033621 Quercus lobata HOM05D000999 ORTHO05D000961 1.3e-07 60.8 193 32.1
Eucgr.B02409 Eucalyptus grandis HOM05D000999 ORTHO05D000961 1.7e-07 60.5 201 31.8
Actinidia37250 Actinidia chinensis HOM05D000999 ORTHO05D000961 2.2e-07 60.1 178 36.0
Duzib170G0162 Durio zibethinus HOM05D000999 ORTHO05D000961 2.2e-07 60.1 196 36.2
Gohir.D01G208300 Gossypium hirsutum HOM05D000999 ORTHO05D000961 5.0e-07 58.9 86 41.9
EL10Ac5g12529 Beta vulgaris HOM05D000999 ORTHO05D000961 8.5e-07 58.2 249 30.9
vmacro03121 Vaccinium macrocarpon HOM05D000999 ORTHO05D000961 8.5e-07 58.2 195 34.4
Gohir.A03G037900 Gossypium hirsutum HOM05D000999 ORTHO05D000961 1.1e-06 57.8 198 34.8
Gorai.002G253400 Gossypium raimondii HOM05D000999 ORTHO05D000961 1.9e-06 57.0 86 40.7
AL6G11880 Arabidopsis lyrata HOM05D000999 ORTHO05D012743 2.5e-06 56.6 135 40.0
Sp4g19700 Schrenkiella parvula HOM05D000999 ORTHO05D000961 4.2e-06 55.8 167 37.7
AT5G02600 Arabidopsis thaliana HOM05D000999 ORTHO05D012743 5.5e-06 55.5 134 38.8
Gohir.D03G130500 Gossypium hirsutum HOM05D000999 ORTHO05D000961 5.5e-06 55.5 193 35.2
Gorai.003G137300 Gossypium raimondii HOM05D000999 ORTHO05D000961 5.5e-06 55.5 193 35.2
Oeu058521.1 Olea europaea HOM05D000999 ORTHO05D000961 5.5e-06 55.5 185 30.8


User provided reference genes

Program Settings